Os03g0387100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2).
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Os03g0387100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.61 | 0.276 | 11.5 | 0.0521 | 0.351 | -0.323 | -0.158 | -0.72 | -0.0139 | 21 | 20.71 | 751 | -- | -- |
| 35.67 | 0.278 | 11.5 | 0.19 | 0.348 | -0.25 | -0.413 | -- | 0.0296 | 21 | 21.59 | 729 | -- | -- |
| 34.69 | 0.274 | 11.5 | 0.0441 | 0.352 | -0.329 | -- | -0.783 | -0.0167 | 21 | 20.76 | 750 | -- | -- |
| 36.24 | 0.28 | 11.5 | 0.209 | 0.349 | -0.253 | -- | -- | 0.0405 | 20.9 | 22.04 | 803 | -- | -- |
| 40.68 | 0.297 | 11.5 | 0.00317 | -- | -0.29 | -- | -0.853 | -0.0401 | -- | 20.9 | 1372 | -- | -- |
| 37.99 | 0.289 | 11.5 | 0.0981 | 0.3 | -- | -0.413 | -- | -0.0427 | 20.9 | -- | -- | -- | -- |
| 38.57 | 0.291 | 11.5 | 0.112 | 0.301 | -- | -- | -- | -0.0426 | 20.9 | -- | -- | -- | -- |
| 41.5 | 0.301 | 11.5 | 0.159 | -- | -0.185 | -- | -- | 0.0073 | -- | 22.1 | 1518 | -- | -- |
| 37.11 | 0.284 | 11.5 | -- | 0.339 | -0.2 | -- | -- | 0.00179 | 21.1 | 22.01 | 797 | -- | -- |
| 43.76 | 0.309 | 11.5 | 0.112 | -- | -- | -- | -- | -0.0446 | -- | -- | -- | -- | -- |
| 38.89 | 0.292 | 11.5 | -- | 0.301 | -- | -- | -- | -0.0551 | 21 | -- | -- | -- | -- |
| 42.15 | 0.303 | 11.5 | -- | -- | -0.169 | -- | -- | -0.0144 | -- | 22.08 | 1479 | -- | -- |
| 44.09 | 0.31 | 11.5 | -- | -- | -- | -- | -- | -0.0571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.57 | temperature | 15.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 3 | 33.59 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 4 | 33.60 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 5 | 33.63 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 7 | 33.65 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 9 | 33.67 | wind | 1.0 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 14 | 33.76 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 15 | 33.76 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 35 | 33.83 | temperature | 30.0 | 270 | < th | dose independent | sin | 6 | NA |
| 37 | 33.86 | humidity | 90.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 49 | 33.94 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 50 | 33.95 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 51 | 33.96 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 52 | 33.96 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 53 | 33.97 | temperature | 30.0 | 270 | > th | dose independent | sin | 5 | NA |
| 58 | 33.98 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 62 | 34.00 | temperature | 30.0 | 90 | > th | dose independent | rect. | 9 | 7 |
| 78 | 34.01 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 80 | 34.01 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 85 | 34.01 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 134 | 34.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 138 | 34.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 139 | 34.05 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 145 | 34.06 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 149 | 34.07 | temperature | 30.0 | 10 | > th | dose independent | rect. | 9 | 7 |
| 177 | 34.08 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 191 | 34.09 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 193 | 34.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 200 | 34.10 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 205 | 34.11 | temperature | 30.0 | 90 | < th | dose independent | sin | 2 | NA |
| 263 | 34.17 | temperature | 30.0 | 90 | > th | dose independent | sin | 2 | NA |
| 272 | 34.19 | wind | 1.0 | 10 | > th | dose independent | rect. | 4 | 1 |
| 437 | 34.27 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 441 | 34.27 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 442 | 34.28 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 443 | 34.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 448 | 34.28 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 449 | 34.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 455 | 34.29 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 459 | 34.30 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 465 | 34.30 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 466 | 34.31 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 470 | 34.31 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 4 |
| 486 | 34.32 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 493 | 34.33 | temperature | 20.0 | 720 | > th | dose independent | sin | 21 | NA |
| 500 | 34.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 503 | 34.34 | temperature | 20.0 | 720 | < th | dose independent | sin | 16 | NA |
| 507 | 34.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 18 |
| 508 | 34.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 20 |
| 509 | 34.34 | temperature | 30.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 511 | 34.34 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 3 | 5 |
| 520 | 34.35 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 523 | 34.36 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 529 | 34.37 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 533 | 34.37 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 541 | 34.38 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 570 | 34.40 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 572 | 34.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 575 | 34.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 579 | 34.40 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 588 | 34.40 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 589 | 34.40 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 590 | 34.40 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 601 | 34.40 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 629 | 34.41 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 678 | 34.45 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 679 | 34.45 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 686 | 34.45 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 737 | 34.48 | temperature | 30.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 746 | 34.49 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 747 | 34.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 803 | 34.52 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 12 |
| 809 | 34.52 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 815 | 34.53 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 817 | 34.53 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 821 | 34.54 | temperature | 20.0 | 720 | < th | dose independent | rect. | 18 | 11 |
| 823 | 34.54 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 17 |
| 832 | 34.55 | wind | 3.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 833 | 34.55 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 834 | 34.55 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 838 | 34.55 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 841 | 34.55 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 844 | 34.55 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 846 | 34.55 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 854 | 34.55 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 8 |
| 859 | 34.55 | temperature | 20.0 | 720 | < th | dose independent | rect. | 14 | 15 |
| 868 | 34.55 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 872 | 34.55 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 890 | 34.56 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 891 | 34.56 | temperature | 30.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 895 | 34.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 933 | 34.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 956 | 34.58 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 983 | 34.60 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 11 | 1 |
| 988 | 34.61 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 995 | 34.61 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 997 | 34.61 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 23 | 9 |