BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0579900 Os11g0579900|AK102366
(746 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0579900 Armadillo-like helical domain containing protein 1568 0.0
Os12g0488900 Armadillo-like helical domain containing protein 576 e-164
Os03g0191700 Armadillo-like helical domain containing protein 293 5e-79
Os12g0493900 Armadillo-like helical domain containing protein 285 7e-77
Os09g0497100 Similar to Pumilio RBD (Fragment) 187 3e-47
Os01g0844800 Similar to Pumilio RBD (Fragment) 185 9e-47
Os04g0201200 Armadillo-like helical domain containing protein 185 1e-46
Os08g0519800 Similar to Maternal pumilio protein. Splice is... 185 1e-46
Os01g0971900 Similar to BPM 182 7e-46
Os12g0574400 Similar to BPM 159 5e-39
AK119738 112 1e-24
Os09g0371800 94 4e-19
Os09g0262100 77 6e-14
>Os11g0579900 Armadillo-like helical domain containing protein
Length = 746
Score = 1568 bits (4061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/746 (100%), Positives = 746/746 (100%)
Query: 1 MEDPQGGQDCSKFGAFVDKNSGASSSSAADIELQNMCGTSVARTASLSTGRASPSQFAPT 60
MEDPQGGQDCSKFGAFVDKNSGASSSSAADIELQNMCGTSVARTASLSTGRASPSQFAPT
Sbjct: 1 MEDPQGGQDCSKFGAFVDKNSGASSSSAADIELQNMCGTSVARTASLSTGRASPSQFAPT 60
Query: 61 VGRYHRAAGSCQSDVLPDEQSLASAFDMVLSFRNHPVDYPTNPCNVVPSNGLYVSGPMRA 120
VGRYHRAAGSCQSDVLPDEQSLASAFDMVLSFRNHPVDYPTNPCNVVPSNGLYVSGPMRA
Sbjct: 61 VGRYHRAAGSCQSDVLPDEQSLASAFDMVLSFRNHPVDYPTNPCNVVPSNGLYVSGPMRA 120
Query: 121 TSVQSFDPLLVQDESMRPQFGAGHGKLKTDEFTVDQQEQAHMLSHYFGNWPQNYGMNNMG 180
TSVQSFDPLLVQDESMRPQFGAGHGKLKTDEFTVDQQEQAHMLSHYFGNWPQNYGMNNMG
Sbjct: 121 TSVQSFDPLLVQDESMRPQFGAGHGKLKTDEFTVDQQEQAHMLSHYFGNWPQNYGMNNMG 180
Query: 181 GVASTPYKPSASLYQQPFYMDEQSQMYAPYQQIPSNFLLQHDMDVQNHSSMQPHYVYPQM 240
GVASTPYKPSASLYQQPFYMDEQSQMYAPYQQIPSNFLLQHDMDVQNHSSMQPHYVYPQM
Sbjct: 181 GVASTPYKPSASLYQQPFYMDEQSQMYAPYQQIPSNFLLQHDMDVQNHSSMQPHYVYPQM 240
Query: 241 QHAAGSNVRSNQQAAACTSARGRSTYGHQLLLDGAVYHNGNNQMNSLYMDGFPGMYTDSS 300
QHAAGSNVRSNQQAAACTSARGRSTYGHQLLLDGAVYHNGNNQMNSLYMDGFPGMYTDSS
Sbjct: 241 QHAAGSNVRSNQQAAACTSARGRSTYGHQLLLDGAVYHNGNNQMNSLYMDGFPGMYTDSS 300
Query: 301 FDSSDFHRLLEAEKFAHPYELNSSSKGFLQPQIPDDLSTMKMLMNSAGVNRVRAIKFPPT 360
FDSSDFHRLLEAEKFAHPYELNSSSKGFLQPQIPDDLSTMKMLMNSAGVNRVRAIKFPPT
Sbjct: 301 FDSSDFHRLLEAEKFAHPYELNSSSKGFLQPQIPDDLSTMKMLMNSAGVNRVRAIKFPPT 360
Query: 361 VNGYSGVGRRTNGYGHNHLDVKSDETLHLNGLNSQFMSLKSEYDLAMKSTQLNYGSVDEV 420
VNGYSGVGRRTNGYGHNHLDVKSDETLHLNGLNSQFMSLKSEYDLAMKSTQLNYGSVDEV
Sbjct: 361 VNGYSGVGRRTNGYGHNHLDVKSDETLHLNGLNSQFMSLKSEYDLAMKSTQLNYGSVDEV 420
Query: 421 AGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNYLVQKLLEEC 480
AGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNYLVQKLLEEC
Sbjct: 421 AGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNYLVQKLLEEC 480
Query: 481 SDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSALSPGAMRLM 540
SDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSALSPGAMRLM
Sbjct: 481 SDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSALSPGAMRLM 540
Query: 541 TDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQKYNL 600
TDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQKYNL
Sbjct: 541 TDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQKYNL 600
Query: 601 LCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQKCGSHVVENC 660
LCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQKCGSHVVENC
Sbjct: 601 LCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQKCGSHVVENC 660
Query: 661 LKQASELDREMIIHELMADSKLPHIMADPFGNFVIQTALKECKGELHSSFVEAIRPHAPA 720
LKQASELDREMIIHELMADSKLPHIMADPFGNFVIQTALKECKGELHSSFVEAIRPHAPA
Sbjct: 661 LKQASELDREMIIHELMADSKLPHIMADPFGNFVIQTALKECKGELHSSFVEAIRPHAPA 720
Query: 721 LQNDVYAKRVLSKTYLKNKQYRLGIF 746
LQNDVYAKRVLSKTYLKNKQYRLGIF
Sbjct: 721 LQNDVYAKRVLSKTYLKNKQYRLGIF 746
>Os12g0488900 Armadillo-like helical domain containing protein
Length = 769
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 347/780 (44%), Positives = 477/780 (61%), Gaps = 66/780 (8%)
Query: 1 MEDPQGGQDCSKFGAFVDKNSGASSSSAADIELQNMCGTSVARTASLSTGRASPSQFAPT 60
M++ G Q+ + GA+ DK + A A +EL G+ A +S G +AP
Sbjct: 17 MDEVPGNQEDPRLGAYADKITDAMF--ADHVEL----GSHYAGDSSSEAG------WAPM 64
Query: 61 VGRYHRAA--GSCQSDV------LPDE-QSLASAF-DMVLSFRNHPVDYPTNPCNVVPSN 110
+ R + GS Q V LPD+ SLASAF +M L FR+ V P NP +V P
Sbjct: 65 IARMQSQSQLGSNQLGVSFENGSLPDDPASLASAFKNMSLGFRDFTVGTPANPVSVAPLG 124
Query: 111 GLYVSGPMRA---TSVQSFDPLLVQDESMRPQFGAGHGKLKTDEFTVDQQEQAHMLSHY- 166
G Y + + + T++ SF + RP +++ +M Y
Sbjct: 125 GHYPASHVISSGETTMNSFHQQEFAQDGFRPS-------------SLNPNVAEYMKPKYG 171
Query: 167 FGNWPQNYGMNNMGGVASTPYK--PSASLYQQPFYMDEQSQMYAPYQQIPSNFLLQHDMD 224
N G++ V+ PY SAS Q+ +++D Q + APYQQ SNF+ Q D D
Sbjct: 172 VHNVQMCTGLHGSDYVSGDPYNLPSSASPLQKQYFIDGQFRANAPYQQTGSNFMRQ-DFD 230
Query: 225 VQNHSSMQPHYVYPQMQHAAGSNV---RSNQQAAACTSARGRSTY------GHQ------ 269
+H +Q Y Y QM AGS+V RSNQ +S S Y G Q
Sbjct: 231 ADSHYLLQSQYAYQQMPQVAGSDVHWVRSNQHGVH-SSIPAASPYLRTPMVGQQAHSSAD 289
Query: 270 LLLDGAVYHNGNNQMNSLYMDGFPGM-YTDSSFDSSDFHRLLEAEKFAHPYELNSSSKGF 328
+GA +GNNQ+NS +++ + Y D S + ++ ++ +AEK H Y SSKGF
Sbjct: 290 TYWNGAAISHGNNQLNSTFVNNCSCIIYPDCSREICEYCQMKQAEKLKHRYMFRRSSKGF 349
Query: 329 LQPQIPDDLSTM----KMLMNSAGVNRVRAIKFPPTVNGYSGVGRRTNGYGHN-HLDVKS 383
LQPQI D ++ K ++ S +N R I+ NG + +R N +GHN HL+++
Sbjct: 350 LQPQIFDKVNIKCFPGKTMVKSDDINSARNIQSVFEPNGRIEMNQRINQHGHNQHLNIQG 409
Query: 384 DETLHLNGLNSQFMS-LKSEYDLAMKSTQLNYGSVDEVAGRIYMLAKDQNGCRFLQKVFT 442
++ L + LNSQ +S ++SEY LAMK Q++Y SVDEV G+I++LAKDQNGCRFLQ++FT
Sbjct: 410 NDFLLFDRLNSQALSPVESEYGLAMKIPQMSYSSVDEVVGKIHLLAKDQNGCRFLQRIFT 469
Query: 443 EGTKEDFEKILAEIIDHFGELMIDPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITV 502
EGT E+ +K+ II+H GEL++DPFGNYLVQKLLEEC+ DQ+ I+ EIT+ PG+LI
Sbjct: 470 EGTSENVKKVFDGIIEHIGELVVDPFGNYLVQKLLEECNHDQKMHIVYEITKRPGQLIKF 529
Query: 503 ACNMHGTRTVQKVIDTINTPEQISKVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKA 562
+C+MHGTR VQKVI+TIN+P+++S VV ALS GA+ LM D NG HVA RCL+K E+KA
Sbjct: 530 SCDMHGTRVVQKVIETINSPDEVSMVVCALSSGAITLMMDANGCHVALRCLQKFSHEHKA 589
Query: 563 FLLDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQKYNLLCKITSSALSLSEDQYGNYVIQ 622
FLL+VA + LA+D+ GCCIIQKCI H+N EQK LL ITS AL LSE QYGNYV+Q
Sbjct: 590 FLLNVAMEYYFELAQDRQGCCIIQKCILHANKEQKNQLLYNITSRALELSEHQYGNYVVQ 649
Query: 623 FVVNLGIEWATSKIVKELKGHFGYLSMQKCGSHVVENCLKQASELDREMIIHELMADSKL 682
++++L I WAT +I+ +L+ HFG LSMQK S+VVE CLK+AS R IIHEL+ D KL
Sbjct: 650 YILDLHISWATDEILDKLEDHFGSLSMQKSSSNVVEKCLKEASWPKRVKIIHELINDPKL 709
Query: 683 PHIMADPFGNFVIQTALKECK-GELHSSFVEAIRPHAPALQNDVYAKRVLSKTYLKNKQY 741
HI+ DP+GN+VIQTALKEC+ + + + AIRPH AL+N+++ KR+LSKTYLKN+++
Sbjct: 710 LHILIDPYGNYVIQTALKECEDAAVRAVLIGAIRPHVAALRNNMFGKRILSKTYLKNRKH 769
>Os03g0191700 Armadillo-like helical domain containing protein
Length = 708
Score = 293 bits (749), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 211/319 (66%), Gaps = 1/319 (0%)
Query: 412 LNYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNY 471
L Y ++ G IY +AKDQNGCRFLQ+ F EG K+ + I IIDH ELM + F NY
Sbjct: 384 LRYENMVGAKGYIYFMAKDQNGCRFLQQKFEEG-KDQADLIFEGIIDHIPELMANSFANY 442
Query: 472 LVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSA 531
LVQKLL+ C ++QR RII +T P +L+ V+ N HGTR++QK+I+T+ T +QI ++SA
Sbjct: 443 LVQKLLDVCDEEQRLRIIAVLTEDPVKLLRVSLNSHGTRSIQKLIETVKTRKQIMLIISA 502
Query: 532 LSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEH 591
L PG + L+ D NG+HV Q+CLK E F+ + AA + +A ++HGCC++Q CI +
Sbjct: 503 LQPGFIHLVNDPNGNHVIQKCLKNFDAEENKFIFEAAATHCVEMAINRHGCCVLQSCISN 562
Query: 592 SNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQK 651
+ E + L+ +I + L L++DQ+GNYVIQ+V++L I +A +++ +G++ YLS QK
Sbjct: 563 AYGEYQIKLIMQICADGLYLAQDQFGNYVIQYVLDLKIPFANAQLASLFQGNYVYLSKQK 622
Query: 652 CGSHVVENCLKQASELDREMIIHELMADSKLPHIMADPFGNFVIQTALKECKGELHSSFV 711
GS+VVE CLK + D+ II EL++ S ++ DP+ N+VI TAL + +G L S+ V
Sbjct: 623 VGSNVVEKCLKVFPDDDKAAIIWELISASHFEQLLQDPYANYVIHTALVQTRGHLRSALV 682
Query: 712 EAIRPHAPALQNDVYAKRV 730
AI PH A++ + KR+
Sbjct: 683 NAILPHEEAIRTNPCCKRI 701
>Os12g0493900 Armadillo-like helical domain containing protein
Length = 520
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 206/327 (62%), Gaps = 3/327 (0%)
Query: 413 NYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEGTKE-DFEKILAEIIDHFGELMIDPFGNY 471
Y S+ + G +Y +A+DQ+GCRFLQ+ +G +E DF I A + H ELM++PFGNY
Sbjct: 196 RYESLAGLRGFMYHIARDQHGCRFLQQRLDDGKREVDF--IFAGVARHAVELMVNPFGNY 253
Query: 472 LVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSA 531
L+QKLL C D+QR I+ +T+ P L+ ++ N+HGTR VQK+I+++ T E+I VV A
Sbjct: 254 LMQKLLAVCDDEQRMAIVLTLTKDPFVLVRISLNVHGTRAVQKLIESLRTREEIQLVVQA 313
Query: 532 LSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEH 591
L PG + L+ D NG+HV QRCL+ + + AA+ L + HGCC++Q+CI
Sbjct: 314 LRPGFLELIKDPNGNHVVQRCLQSFDANDNKPIFEAAAVHCLDIGMQCHGCCVLQRCIAR 373
Query: 592 SNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQK 651
S EQ+ L+ I S+ L++D YGNYV+Q+V++L + A + + K+ +G + +LSMQK
Sbjct: 374 SGGEQREKLVAAIASNGFELAQDAYGNYVVQYVIDLKVPTANASLTKQFQGRYIHLSMQK 433
Query: 652 CGSHVVENCLKQASELDREMIIHELMADSKLPHIMADPFGNFVIQTALKECKGELHSSFV 711
S+VVE CLK E D+ II EL+A ++ PF N+VI +A++ KG LHS+
Sbjct: 434 FSSNVVEKCLKVFKEADKATIILELLAVPHFEQLLQHPFANYVIYSAIQNSKGSLHSALT 493
Query: 712 EAIRPHAPALQNDVYAKRVLSKTYLKN 738
AIRPH L+ Y KR+ S+ LK
Sbjct: 494 NAIRPHVELLRTSPYCKRIYSRALLKK 520
>Os09g0497100 Similar to Pumilio RBD (Fragment)
Length = 988
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 178/319 (55%), Gaps = 9/319 (2%)
Query: 419 EVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNYLVQKLLE 478
++ G+I + DQNG RF+Q+ T E+ + + AE++ H ELM D FGNY++QK E
Sbjct: 651 DIKGQIVKYSSDQNGSRFIQQKLENCTIEEKDLLFAEVLPHALELMTDVFGNYVIQKFFE 710
Query: 479 ECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSALSPGAMR 538
+ S Q+ I ++ G + +++ M+G R +QK ++ I+ EQ +V L +R
Sbjct: 711 KGSPQQKREIA---NKLAGHVFSLSLQMYGCRVIQKALEVIDL-EQKIVLVGELDGHVLR 766
Query: 539 LMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEH-SNDEQK 597
+ D NG+HV Q+C++ + E+ FL+ + +L+ +GC +IQ+ +E SN+ +
Sbjct: 767 CVHDQNGNHVIQKCIECIPLEHIGFLVSSFQCQVAKLSMHTYGCRVIQRILERCSNNSEC 826
Query: 598 YNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQKCGSHVV 657
++ +I SA L++DQYGNYV+Q V+ G E +I+ +L G +S K S+V+
Sbjct: 827 LCIIDEILQSACILAQDQYGNYVVQHVLEKGNEHERGQIITKLAGQVVPMSQNKFASNVI 886
Query: 658 ENCLKQASELDREMIIHELMADSK----LPHIMADPFGNFVIQTALKECKGELHSSFVEA 713
E C + +RE+++ E++ ++ L IM D + N+V+Q L C + +
Sbjct: 887 ERCFEHGGSAERELLVKEILKQTEGNNYLLVIMKDQYANYVVQKMLTTCNEQHKEILLSR 946
Query: 714 IRPHAPALQNDVYAKRVLS 732
++ H P L+ YAK ++S
Sbjct: 947 VKIHLPLLKKYTYAKHIVS 965
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 130/271 (47%), Gaps = 10/271 (3%)
Query: 466 DPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQI 525
DP ++ V++L+ RT + E+ + G+++ + + +G+R +Q+ ++ T E+
Sbjct: 629 DPKAHFSVEELI-----SSRTHRV-ELADIKGQIVKYSSDQNGSRFIQQKLENC-TIEEK 681
Query: 526 SKVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCII 585
+ + + P A+ LMTD G++V Q+ +K P+ K + + A L+ +GC +I
Sbjct: 682 DLLFAEVLPHALELMTDVFGNYVIQKFFEKGSPQQKREIANKLAGHVFSLSLQMYGCRVI 741
Query: 586 QKCIEHSNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFG 645
QK +E + EQK L+ ++ L DQ GN+VIQ + +V +
Sbjct: 742 QKALEVIDLEQKIVLVGELDGHVLRCVHDQNGNHVIQKCIECIPLEHIGFLVSSFQCQVA 801
Query: 646 YLSMQKCGSHVVENCLKQASELDREM-IIHELMADSKLPHIMADPFGNFVIQTALKECKG 704
LSM G V++ L++ S + II E++ + + + D +GN+V+Q L++
Sbjct: 802 KLSMHTYGCRVIQRILERCSNNSECLCIIDEILQSACI--LAQDQYGNYVVQHVLEKGNE 859
Query: 705 ELHSSFVEAIRPHAPALQNDVYAKRVLSKTY 735
+ + + + +A V+ + +
Sbjct: 860 HERGQIITKLAGQVVPMSQNKFASNVIERCF 890
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 114/246 (46%), Gaps = 9/246 (3%)
Query: 418 DEVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNYLVQKLL 477
+++AG ++ L+ GCR +QK E ++ E+ H + D GN+++QK +
Sbjct: 722 NKLAGHVFSLSLQMYGCRVIQKALEVIDLEQKIVLVGELDGHVLRCVHDQNGNHVIQKCI 781
Query: 478 EECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSALSPGAM 537
EC + + ++ ++ ++ + +G R +Q++++ + + ++ + A
Sbjct: 782 -ECIPLEHIGFL--VSSFQCQVAKLSMHTYGCRVIQRILERCSNNSECLCIIDEILQSAC 838
Query: 538 RLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQK 597
L D G++V Q L+K + ++ A + + +++++ +I++C EH ++
Sbjct: 839 ILAQDQYGNYVVQHVLEKGNEHERGQIITKLAGQVVPMSQNKFASNVIERCFEHGGSAER 898
Query: 598 YNLLCKITSSA------LSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQK 651
L+ +I L + +DQY NYV+Q ++ E ++ +K H L
Sbjct: 899 ELLVKEILKQTEGNNYLLVIMKDQYANYVVQKMLTTCNEQHKEILLSRVKIHLPLLKKYT 958
Query: 652 CGSHVV 657
H+V
Sbjct: 959 YAKHIV 964
>Os01g0844800 Similar to Pumilio RBD (Fragment)
Length = 1060
Score = 185 bits (470), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 202/401 (50%), Gaps = 33/401 (8%)
Query: 353 RAIKFPPTVNGYSGVGRRTNGYGHNHLDVKSDETLHLNGLNSQF-MSLKSEYDLAMKSTQ 411
R ++FP + G +GY +N F SL E+ KS +
Sbjct: 679 RNMRFPSNLRNLGGWNSDPSGY-----------------MNDNFPSSLLDEF----KSNK 717
Query: 412 LNYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNY 471
+ E+A + + DQ G RF+Q+ T E+ + + EI+ LM D FGNY
Sbjct: 718 ARSFELAEIASHVVEFSADQYGSRFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNY 777
Query: 472 LVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSA 531
+VQK E S QR + ++ G ++ ++ M+G R +QK I+ ++ +Q +K+V+
Sbjct: 778 VVQKFFEHGSAAQRRELADQLF---GHVLALSLQMYGCRVIQKAIEVVDL-DQKTKMVTE 833
Query: 532 LSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEH 591
L MR + D NG+HV Q+C++ + + F++ + + L+ +GC +IQ+ +EH
Sbjct: 834 LDGHIMRCVRDQNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVLEH 893
Query: 592 SNDEQKYNLLC-KITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQ 650
D + ++ +I S L++DQYGNYV+Q V+ G S I+++L G +S Q
Sbjct: 894 CTDPKTQEIVMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSVIIEKLAGQIIQMSQQ 953
Query: 651 KCGSHVVENCLKQASELDREMIIHELMA----DSKLPHIMADPFGNFVIQTALKECKGEL 706
K S+VVE CL +RE++I+E++ + L +M D FGN+V+Q L+ C +
Sbjct: 954 KFASNVVEKCLTFGGPAEREVLINEMLGTTDENEPLQAMMKDQFGNYVVQKVLETCDDQQ 1013
Query: 707 HSSFVEAIRPHAPALQNDVYAKRVLSKT--YLKNKQYRLGI 745
+ ++ H AL+ Y K ++++ + + R+G+
Sbjct: 1014 RELILSRVKVHLSALKKYTYGKHIVARVEKLVAAGERRIGL 1054
>Os04g0201200 Armadillo-like helical domain containing protein
Length = 795
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 186/336 (55%), Gaps = 7/336 (2%)
Query: 401 SEYDLAMKSTQLNYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHF 460
S DLA +S V+ V G + ++ DQ G RF+Q+ + +D EKI EI+ +
Sbjct: 431 SSLDLANRSGACPLELVN-VVGHVMEVSMDQFGSRFIQQKLEVASADDREKIFPEILTNA 489
Query: 461 GELMIDPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTIN 520
L D FGNY++QK E ++ Q +++ ++ G + ++ M+G R VQKVID ++
Sbjct: 490 IALTTDVFGNYVIQKFFEFATESQLSQLADQLR---GHFLQLSFQMYGCRVVQKVIDVVD 546
Query: 521 TPEQISKVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQH 580
+IS +V L +R ++D NG+HV Q+C++ + ++ F+++ + L Q+
Sbjct: 547 LERKIS-IVGELKNSVLRCISDQNGNHVIQKCIECVPEDHIPFVIEDILQKIYPLCTHQY 605
Query: 581 GCCIIQKCIEHS-NDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKE 639
GC +IQ+ +EH N + ++ +I A L+ED++GNYV+Q V+ G S I+++
Sbjct: 606 GCRVIQRVLEHCHNPATQSAVMDEIVERAFDLTEDKFGNYVVQHVLEHGRPEERSSIIQK 665
Query: 640 LKGHFGYLSMQKCGSHVVENCLKQASELDREMIIHELMADSK-LPHIMADPFGNFVIQTA 698
L G LS QK S+VVE CL + +RE +I E+++ + +M D FGN+V+Q
Sbjct: 666 LSGQVVNLSQQKYASNVVEKCLSFGTPDEREGLIREIVSSGQTFQGLMKDQFGNYVVQRI 725
Query: 699 LKECKGELHSSFVEAIRPHAPALQNDVYAKRVLSKT 734
L+ C + + +I+ H L+N + K ++++
Sbjct: 726 LQTCDDKFLVVILSSIKMHLNELKNYTFGKHIVARV 761
>Os08g0519800 Similar to Maternal pumilio protein. Splice isoform E
Length = 1001
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 180/332 (54%), Gaps = 9/332 (2%)
Query: 407 MKSTQLNYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMID 466
+KS + + ++AG I + DQ+G RF+Q+ T E+ + +E++ H LM D
Sbjct: 660 LKSNRARRVELSDIAGHIVEYSADQHGSRFIQQKLENCTAEEKASVFSEVLPHASSLMTD 719
Query: 467 PFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQIS 526
FGNY++QK E + +QR + T++ G ++ ++ M+G R +QK ++ + ++I
Sbjct: 720 VFGNYVIQKFFEHGTPEQRRDL---ATKLVGHVLPLSLQMYGCRVIQKALEVMELDQKI- 775
Query: 527 KVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQ 586
++V L MR + D NG+HV Q+C++ + E+ F++ + L+ +GC +IQ
Sbjct: 776 ELVRELDGNIMRCVRDQNGNHVIQKCIECVPTEHIGFVVSAFRGQVASLSMHPYGCRVIQ 835
Query: 587 KCIEH-SNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFG 645
+ +EH D Q ++ +I SA L++DQYGNYV Q V+ G ++I+ +L G
Sbjct: 836 RVLEHCGGDSQGQCIIDEILESACVLAQDQYGNYVTQHVLERGRGHERTQIISKLAGQVV 895
Query: 646 YLSMQKCGSHVVENCLKQASELDREMIIHELM----ADSKLPHIMADPFGNFVIQTALKE 701
+S K S+V+E C + +R+++I E++ + L +M D + N+V+Q L+
Sbjct: 896 TMSQNKFASNVIEKCFQHGDMTERDLLIREIVKQTEGNDNLLAMMKDQYANYVVQKILET 955
Query: 702 CKGELHSSFVEAIRPHAPALQNDVYAKRVLSK 733
C + + ++ H AL+ Y K ++S+
Sbjct: 956 CNEQQRELLLSRVKGHLQALRKYTYGKHIVSR 987
>Os01g0971900 Similar to BPM
Length = 894
Score = 182 bits (463), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 209/400 (52%), Gaps = 27/400 (6%)
Query: 353 RAIKFPPTVNGYSGVGRRTNGYGHNHLDVKSDETLHLNGLNSQFMSLKSEYDLAMKSTQL 412
R++++P + + G + G ++ L K + L + L +F S KS KS +L
Sbjct: 509 RSMRYPSGMRNFGG----SFGSWNSDLGGKMEANL-VPSLLEEFKSNKS------KSYEL 557
Query: 413 NYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGELMIDPFGNYL 472
+ E+AG + + DQ G RF+Q+ + E+ + + AEI+ LM D FGNY+
Sbjct: 558 S-----EIAGHVVEFSADQYGSRFIQQKLETASTEEKDMVFAEIMPQALTLMTDVFGNYV 612
Query: 473 VQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQISKVVSAL 532
VQK E S Q + ++ G ++ ++ M+G R +QK I+ ++ +Q +K+V+ L
Sbjct: 613 VQKFFEHGSSAQIKELADQLI---GRVLALSLQMYGCRVIQKAIEVVDLDQQ-TKMVAEL 668
Query: 533 SPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEHS 592
MR + D NG+HV Q+C++ + F++ + + L+ +GC +IQ+ +EH
Sbjct: 669 DGQVMRCVRDQNGNHVIQKCIECIPQHAIQFIVSTFYGQVVMLSTHPYGCRVIQRVLEHC 728
Query: 593 NDEQKYNLLC-KITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGHFGYLSMQK 651
+D + ++ +I S L+ DQYGNYV+Q V+ G S I+++L G +S QK
Sbjct: 729 DDPKTQQIMMDEILQSVCLLATDQYGNYVVQHVLEHGKPHERSAIIEKLIGQIVQMSQQK 788
Query: 652 CGSHVVENCLKQASELDREMIIHELMADSK----LPHIMADPFGNFVIQTALKECKGELH 707
S+V+E CL + ++R+++I E++ S L +M D F N+V+Q L+ C +
Sbjct: 789 FASNVIEKCLAFGNPVERQVLIGEMLGSSNESEHLEVMMKDQFANYVVQKVLETCDDQQR 848
Query: 708 SSFVEAIRPHAPALQNDVYAKRVLSKT--YLKNKQYRLGI 745
+ I+ H L+ Y K ++++ + + RLG+
Sbjct: 849 EMILTRIKAHLNTLKKYTYGKHIVARVEKLVAAGEKRLGL 888
>Os12g0574400 Similar to BPM
Length = 1274
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 177/340 (52%), Gaps = 15/340 (4%)
Query: 405 LAMKSTQLNYGSVD--EVAGRIYMLAKDQNGCRFLQKVFTEGTKEDFEKILAEIIDHFGE 462
L K + LN G+ + G + + DQ G RF+Q+ T ++ + EI+ HF E
Sbjct: 909 LHRKFSSLNKGNYRLFHIEGHVLQCSIDQCGSRFIQQKLPTATPDEKLMVFKEIMPHFLE 968
Query: 463 LMIDPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTP 522
++ D FGNY++QK++E + QR I + G + +++C ++G R VQ+ ++ +
Sbjct: 969 MVTDVFGNYVLQKMIEHGAPFQRREITACLF---GSVSSLSCQLYGCRVVQRAVELSDLD 1025
Query: 523 EQISKVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGC 582
++I ++ L+ M+ + D N +HV Q+C++ + P + F ++ R + L+ +GC
Sbjct: 1026 QKI-QIAKELNSNIMKCIHDPNANHVVQKCIEHVPPRFIQFFVESMYGRVVELSVHPYGC 1084
Query: 583 CIIQKCIEHSNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKG 642
+IQ+ +E+ + + L +I +++DQY NYV+Q ++ G S I+K+ G
Sbjct: 1085 RVIQRILEYFDSSIQEIFLEEIIEEVYYMAKDQYANYVVQNILQHGKALVRSAIIKKFIG 1144
Query: 643 HFGYLSMQKCGSHVVENCLKQASELDREMIIHELMADSKLPH---------IMADPFGNF 693
+S QK S+V+E CL S +++ II+E++ + L ++ D + N+
Sbjct: 1145 RVVAMSKQKFASNVIEKCLIFGSYDEKQKIINEVIGTTDLVRSGETEALVVMVNDQYANY 1204
Query: 694 VIQTALKECKGELHSSFVEAIRPHAPALQNDVYAKRVLSK 733
V+Q ++ C + +R H L + YAK V+++
Sbjct: 1205 VVQKVIETCDEWQRKLILRRLRAHHSLLHDCTYAKHVVAR 1244
>AK119738
Length = 575
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 140/282 (49%), Gaps = 18/282 (6%)
Query: 467 PFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRTVQKVIDTINTPEQIS 526
P G +L+ L + D+ I E+ +I H RT+ + +D QI+
Sbjct: 233 PRGRHLLVGALRQQHTDKIAAIFDELAPHIASIIIDPNGGHVVRTLVEFLDE----AQIA 288
Query: 527 KVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAF----LLDVAALRFLRLAKDQHGC 582
+V L+P + + + S +R L+ L +++ ++DV A + LA Q GC
Sbjct: 289 TLVEYLTPEVVLAIATS--SQNTRRVLQTLFERHRSVALQPVIDVIATHAIALATTQQGC 346
Query: 583 CIIQKCIEHSNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVN-LGIEWATSKIVKELK 641
+ +C+EH+ + Q+ +L +T +L+ D YGNYV+Q V+ E A + K
Sbjct: 347 IAVMRCLEHALEPQRMQVLQALTPQLAALTMDPYGNYVVQAVLQYFTRETACEVLEKAFA 406
Query: 642 GHFGYLSMQKCGSHVVENCLKQASELDREMIIHELMADSK-LPHIMADPFGNFVIQTALK 700
GH+ LS K S+V+E ++ A + R+ I+ EL+ +S+ L IM D FGNFV+Q +
Sbjct: 407 GHWINLSCNKFASNVMEKFIQAAPPVTRKTILDELVYESEVLGAIMHDGFGNFVLQQIID 466
Query: 701 EC-KGELHSSFVEAIRPHAPALQNDVYAKRVLSKTYLKNKQY 741
C G + E IR P L + + ++ +K LK+K++
Sbjct: 467 TCTTGPEYRKLTEKIR---PLLGSSPFGHKIEAK--LKSKRF 503
>Os09g0371800
Length = 498
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 21/256 (8%)
Query: 456 IIDHFGELMIDPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVACNMHGTRT--VQ 513
I+DH ++M G L+ +L C + I+ +IT+ H R+ V
Sbjct: 216 IVDHAADIMESIHGQRLLSCVLHNCCCELHEAIVAKITQ------------HRDRSDGVV 263
Query: 514 KVIDTINTPEQISKVVSALSPGAMR------LMTDTNGSHVAQRCLKKLLPEYKAFLLDV 567
+I + + + V +A+ P R L+TD++ V Q C++ + L+D
Sbjct: 264 TMIRSCRSLKSCQLVRNAIVPWVGRRSKMQSLVTDSDKLRVIQACIQCFPADIAKVLVDA 323
Query: 568 AALRFLRLAKDQHGCCIIQKCIEHSNDEQKYNLLCKITSSALSLSEDQYGNYVIQFVVNL 627
+ +A +G +Q C+ H E+KY + ++ +++ L++ + GNY++Q V+
Sbjct: 324 VVENCIEIACHLNGLLFLQNCLGHITLEEKYKIFTQVCINSVYLAKHRSGNYIVQDVLEF 383
Query: 628 GIEWATSKIVKELKGHFGYLSMQKCGSHVVENCLKQASELDREMIIHELMAD-SKLPHIM 686
G + I K H+ L+ QK S VVE CLK +L++ +I+ EL+ D ++
Sbjct: 384 GHPFHLEIITSCFKTHYVDLARQKYSSRVVEKCLKVFGDLEQYLIVCELVLDLDHFRDLV 443
Query: 687 ADPFGNFVIQTALKEC 702
D N+VI TAL C
Sbjct: 444 TDEVANYVISTALLAC 459
>Os09g0262100
Length = 576
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 542 DTNGSHVAQRCLKKLLPEYKAFLLDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQKYN-- 599
D GS Q L++ P + LA D +IQK E S+ +Q+
Sbjct: 228 DPFGSRFIQHKLERATPTELLMVYKEIVPHTFMLAIDVFANYVIQKAFEVSDMDQRIEMA 287
Query: 600 ----------------LLCKITSSALSLSEDQYGNYVIQFVVNLGIEWATSKIVKELKGH 643
L+ +I L L DQ+GNYV+Q+VV G E + IV LKG
Sbjct: 288 NERVLEWCDDLEILKELISEIVEGVLELVVDQFGNYVVQYVVEHGGESVRAMIVMRLKGL 347
Query: 644 FGYLSMQKCGSHVVENCLKQASELDREMIIHELMADS--KLPHIMADPFGNFVIQTALKE 701
LS QK GS+V+E CL DR +I +++ S ++ +M + GN+VIQ L+
Sbjct: 348 MVMLSCQKYGSNVMEKCLTIGRIHDRLIIAADIVGASEDQILMVMVNEHGNYVIQKMLET 407
Query: 702 CKGE 705
E
Sbjct: 408 AAAE 411
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 34/278 (12%)
Query: 388 HLNGLNSQFMSLKSEYDLAM---KSTQLNYGSVDEVAGRIYMLAKDQNGCRFLQKVFTEG 444
H+N LN++ SE+ + K+ + N + + + + D G RF+Q
Sbjct: 187 HINTLNNR----NSEFHFLLEQAKNPENNVMRLINIRSHVPAFSADPFGSRFIQHKLERA 242
Query: 445 TKEDFEKILAEIIDHFGELMIDPFGNYLVQKLLEECSDDQRTRIICEITRVPGELITVAC 504
T + + EI+ H L ID F NY++QK E DQR + E
Sbjct: 243 TPTELLMVYKEIVPHTFMLAIDVFANYVIQKAFEVSDMDQRIEMANE------------- 289
Query: 505 NMHGTRTVQKVIDTINTPEQISKVVSALSPGAMRLMTDTNGSHVAQRCLKKLLPEYKAFL 564
+V++ + E + +++S + G + L+ D G++V Q ++ +A +
Sbjct: 290 ---------RVLEWCDDLEILKELISEIVEGVLELVVDQFGNYVVQYVVEHGGESVRAMI 340
Query: 565 LDVAALRFLRLAKDQHGCCIIQKCIEHSNDEQKYNLLCKITSSA----LSLSEDQYGNYV 620
+ + L+ ++G +++KC+ + + I ++ L + +++GNYV
Sbjct: 341 VMRLKGLMVMLSCQKYGSNVMEKCLTIGRIHDRLIIAADIVGASEDQILMVMVNEHGNYV 400
Query: 621 IQFVVNL-GIEWATSKIVKELKGHFGYLSMQKCGSHVV 657
IQ ++ EW IV + +F L G HV+
Sbjct: 401 IQKMLETAAAEWVVDLIVIVVNRNFFRLIHYVHGRHVL 438
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,009,695
Number of extensions: 1040772
Number of successful extensions: 2599
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2406
Number of HSP's successfully gapped: 19
Length of query: 746
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 638
Effective length of database: 11,396,689
Effective search space: 7271087582
Effective search space used: 7271087582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)