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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0579900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.5 (0.0392) R2 : 0.426
β1 : 0.775 (0.143) R2dD : 0.039 R2D : -0.0396
β2 : 1.93 (0.191) R2dC : 0.553 R2C : -0.378
β3 : -2.09 (0.225) R2dE : 0.467 R2E : -0.42
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.08 (0.0843) R2dN8 : 0.286 R2N8 : 0.241
σ : 0.726
deviance : 242.91
__
_____
C
peak time of C : 0.874
E
wheather : temperature
threshold : 37.45
memory length : 62
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.6
open length of G : 13.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.88 0.709 4.48 0.872 1.84 -1.95 2.06 -0.12 1.13 0.731 37.83 63 18.4 13.9
227.01 0.702 4.49 0.879 1.99 -2.04 2.03 -- 1.1 0.826 39.39 60 18.7 13.4
230.53 0.707 4.49 0.715 1.96 -2.04 -- 1.77 1.09 0.845 38.88 46 18.7 13.6
242.91 0.726 4.5 0.775 1.93 -2.09 -- -- 1.08 0.874 37.45 62 18.6 13.4
251.74 0.743 4.44 0.903 -- 0.649 -- 2.47 1.24 -- 44.46 4 16.9 13.1
259.97 0.756 4.45 0.996 0.594 -- 2.11 -- 1.23 22.3 -- -- -- --
276.48 0.779 4.46 0.918 0.619 -- -- -- 1.23 21.3 -- -- -- --
263.92 0.757 4.49 0.706 -- -1.31 -- -- 1.09 -- 41.85 1112 13.4 17.1
258.37 0.749 4.52 -- 1.95 -2.2 -- -- 0.976 0.893 35.73 74 18.6 13.4
298.76 0.808 4.44 0.921 -- -- -- -- 1.23 -- -- -- -- --
298.71 0.808 4.48 -- 0.619 -- -- -- 1.13 21.4 -- -- -- --
271.3 0.767 4.48 -- -- -1.64 -- -- 1.01 -- 44.02 1099 13.7 17.3
321.13 0.836 4.46 -- -- -- -- -- 1.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.42 temperature 15.0 90 > th dose independent rect. 5 22
2 233.62 wind 7.0 90 < th dose independent rect. 5 11
3 233.95 radiation 20.0 4320 < th dose independent rect. 18 12
4 234.38 temperature 30.0 90 < th dose dependent rect. 18 14
5 234.51 atmosphere 1010.0 90 < th dose independent rect. 5 10
6 234.88 temperature 30.0 10 < th dose dependent rect. 6 2
7 235.21 humidity 70.0 720 > th dose independent rect. 19 3
9 235.47 wind 7.0 90 < th dose independent rect. 5 22
11 235.63 temperature 30.0 720 < th dose dependent rect. 19 3
18 236.41 wind 7.0 10 < th dose independent rect. 6 10
24 236.68 radiation 30.0 90 < th dose independent rect. 11 18
28 236.82 humidity 70.0 720 > th dose independent rect. 19 12
31 236.88 temperature 20.0 30 > th dose independent rect. 8 11
35 237.06 radiation 20.0 10 < th dose independent rect. 6 2
38 237.10 radiation 1.0 720 > th dose dependent rect. 18 1
48 237.12 humidity 50.0 14400 > th dose independent rect. 6 3
50 237.19 temperature 20.0 90 > th dose independent rect. 8 21
53 237.32 temperature 30.0 720 < th dose independent rect. 18 15
54 237.32 atmosphere 1010.0 10 < th dose independent rect. 6 20
55 237.32 humidity 50.0 720 > th dose dependent rect. 19 3
59 237.43 humidity 80.0 90 > th dose independent rect. 3 2
60 237.47 temperature 30.0 720 < th dose independent rect. 18 4
61 237.47 radiation 40.0 90 < th dose dependent rect. 10 19
63 237.55 temperature 30.0 90 < th dose independent rect. 18 14
65 237.58 temperature 15.0 90 > th dose independent rect. 7 23
66 237.59 radiation 40.0 10 < th dose dependent rect. 6 2
67 237.61 wind 9.0 1440 < th dose independent rect. 6 3
68 237.61 temperature 10.0 1440 > th dose independent rect. 6 3
71 237.61 humidity 50.0 1440 > th dose independent rect. 6 3
73 237.61 atmosphere 995.0 1440 > th dose independent rect. 6 3
74 237.61 atmosphere 1015.0 1440 < th dose independent rect. 6 3
75 237.61 temperature 10.0 1440 > th dose independent rect. 9 21
78 237.63 atmosphere 1010.0 10 < th dose independent rect. 6 10
79 237.64 wind 3.0 720 > th dose independent rect. 17 2
80 237.66 humidity 60.0 10 > th dose dependent rect. 6 2
81 237.67 radiation 30.0 30 < th dose independent rect. 19 13
85 237.77 temperature 20.0 10 > th dose independent rect. 8 22
91 237.83 humidity 50.0 14400 > th dose independent rect. 18 12
97 237.93 precipitation 0.1 90 < th dose independent rect. 3 2
98 237.93 wind 9.0 30 < th dose independent rect. 19 13
99 237.93 precipitation 0.1 90 < th dose dependent rect. 3 2
106 238.01 humidity 70.0 10 > th dose independent rect. 6 2
110 238.07 wind 9.0 90 < th dose dependent rect. 3 2
111 238.08 humidity 60.0 90 > th dose independent rect. 18 14
119 238.14 atmosphere 1015.0 30 < th dose independent rect. 8 11
120 238.14 temperature 10.0 30 > th dose independent rect. 19 13
124 238.14 atmosphere 995.0 30 > th dose independent rect. 19 13
126 238.19 temperature 10.0 1440 > th dose independent rect. 6 11
129 238.19 temperature 10.0 1440 > th dose independent rect. 17 13
143 238.25 wind 5.0 90 < th dose independent rect. 3 2
144 238.25 humidity 50.0 90 > th dose dependent rect. 3 2
145 238.26 temperature 10.0 90 > th dose dependent rect. 3 2
153 238.38 wind 5.0 43200 < th dose independent rect. 2 1
158 238.43 temperature 10.0 90 > th dose independent rect. 3 2
160 238.43 temperature 30.0 90 < th dose independent rect. 3 2
161 238.43 humidity 50.0 90 > th dose independent rect. 3 2
164 238.43 atmosphere 995.0 90 > th dose independent rect. 3 2
165 238.43 atmosphere 1010.0 90 < th dose independent rect. 3 2
167 238.43 radiation 20.0 90 < th dose independent rect. 3 2
172 238.44 wind 5.0 43200 < th dose independent rect. 23 6
173 238.45 atmosphere 1000.0 10 > th dose independent rect. 6 2
174 238.45 radiation 40.0 14400 > th dose dependent rect. 15 18
176 238.47 radiation 40.0 90 < th dose dependent rect. 3 2
177 238.49 wind 5.0 43200 > th dose independent rect. 2 1
178 238.49 wind 5.0 43200 > th dose independent rect. 23 6
181 238.50 wind 5.0 43200 > th dose dependent rect. 2 1
184 238.54 wind 5.0 43200 < th dose independent rect. 2 3
187 238.54 wind 5.0 43200 > th dose dependent rect. 1 3
190 238.55 radiation 30.0 4320 < th dose independent rect. 6 2
192 238.57 precipitation 0.1 30 < th dose independent rect. 8 11
193 238.57 wind 9.0 90 < th dose dependent rect. 5 11
194 238.57 precipitation 0.1 30 < th dose dependent rect. 8 11
198 238.59 radiation 1.0 90 < th dose independent rect. 3 2
200 238.59 wind 3.0 720 > th dose independent rect. 13 6
205 238.60 wind 9.0 30 < th dose independent rect. 8 11
209 238.62 radiation 40.0 14400 > th dose dependent rect. 7 2
241 238.74 atmosphere 995.0 10 > th dose dependent rect. 6 2
250 238.79 temperature 30.0 720 < th dose independent rect. 18 7
251 238.79 humidity 60.0 720 > th dose independent rect. 18 15
252 238.79 wind 5.0 43200 > th dose dependent rect. 22 7
255 238.81 radiation 30.0 4320 > th dose independent rect. 7 1
272 238.82 wind 5.0 43200 > th dose dependent rect. 4 1
274 238.83 temperature 10.0 90 > th dose dependent rect. 8 21
275 238.83 temperature 10.0 10 > th dose dependent rect. 8 22
283 238.89 wind 5.0 43200 > th dose independent rect. 4 1
284 238.89 humidity 70.0 720 > th dose independent rect. 19 8
286 238.90 wind 5.0 43200 < th dose independent rect. 4 1
291 238.93 wind 1.0 10 > th dose independent rect. 6 2
305 239.00 temperature 15.0 90 > th dose independent rect. 5 11
310 239.03 temperature 15.0 270 > th dose independent rect. 18 14
311 239.04 wind 1.0 90 > th dose independent rect. 5 3
314 239.07 radiation 30.0 4320 < th dose independent rect. 22 10
331 239.17 humidity 50.0 14400 > th dose independent rect. 20 13
346 239.21 wind 7.0 90 < th dose independent rect. 5 18
354 239.27 radiation 30.0 4320 < th dose independent rect. 17 15
360 239.31 temperature 30.0 4320 > th dose dependent rect. 18 1
374 239.31 radiation 40.0 90 < th dose dependent rect. 15 14
376 239.32 radiation 30.0 4320 < th dose independent rect. 2 6
385 239.37 radiation 30.0 14400 < th dose independent rect. 16 9
386 239.37 radiation 40.0 14400 < th dose independent rect. 15 18
388 239.38 precipitation 0.1 90 < th dose independent rect. 16 13
389 239.38 temperature 15.0 90 > th dose independent rect. 7 19
390 239.38 precipitation 0.1 90 < th dose dependent rect. 16 13
396 239.42 radiation 30.0 4320 < th dose independent rect. 24 8
410 239.48 radiation 30.0 14400 < th dose independent rect. 16 7
447 239.62 radiation 30.0 14400 < th dose independent rect. 16 2
453 239.64 radiation 20.0 90 < th dose independent rect. 16 13
459 239.66 wind 7.0 43200 < th dose independent rect. 21 10
460 239.66 wind 1.0 30 > th dose independent rect. 8 11
463 239.68 temperature 10.0 1440 > th dose independent rect. 9 11
466 239.68 temperature 10.0 1440 > th dose independent rect. 20 13
469 239.68 humidity 50.0 1440 > th dose independent rect. 20 13
471 239.68 atmosphere 995.0 1440 > th dose independent rect. 20 13
473 239.69 wind 7.0 10 < th dose independent rect. 6 2
475 239.69 temperature 10.0 10 > th dose independent rect. 6 2
477 239.69 temperature 30.0 10 < th dose independent rect. 6 2
478 239.69 humidity 50.0 10 > th dose independent rect. 6 2
481 239.69 atmosphere 1015.0 10 < th dose independent rect. 6 2
488 239.70 atmosphere 995.0 30 > th dose independent rect. 8 11
494 239.71 radiation 1.0 90 < th dose dependent sin 5 NA
496 239.71 atmosphere 995.0 90 > th dose dependent rect. 3 2
498 239.72 precipitation 0.1 10 < th dose independent rect. 6 2
502 239.72 precipitation 0.1 10 < th dose dependent rect. 6 2
512 239.80 radiation 30.0 14400 < th dose independent rect. 16 5
514 239.81 precipitation 0.1 30 < th dose independent rect. 19 13
516 239.81 precipitation 0.1 30 < th dose dependent rect. 19 13
517 239.82 temperature 15.0 90 > th dose independent rect. 15 14
524 239.85 wind 9.0 90 < th dose independent rect. 16 13
532 239.88 wind 1.0 30 > th dose independent rect. 19 13
555 239.97 humidity 60.0 4320 > th dose independent rect. 18 5
584 240.08 humidity 60.0 4320 > th dose independent rect. 18 10
592 240.11 radiation 1.0 720 > th dose independent rect. 18 1
605 240.13 humidity 60.0 4320 < th dose independent rect. 18 2
619 240.13 radiation 30.0 14400 > th dose dependent rect. 16 1
637 240.15 precipitation 0.1 10 < th dose independent rect. 8 22
638 240.15 wind 9.0 10 < th dose dependent rect. 6 10
639 240.15 precipitation 0.1 10 < th dose dependent rect. 8 22
640 240.16 humidity 60.0 4320 > th dose independent rect. 18 3
650 240.21 wind 3.0 720 < th dose independent rect. 13 9
651 240.21 precipitation 0.1 90 < th dose independent rect. 5 11
652 240.21 precipitation 0.1 90 < th dose dependent rect. 5 11
685 240.31 atmosphere 995.0 90 > th dose independent rect. 5 11
688 240.32 temperature 10.0 1440 > th dose independent rect. 6 9
694 240.32 temperature 10.0 1440 > th dose independent rect. 15 15
697 240.32 temperature 15.0 720 > th dose independent rect. 18 23
710 240.36 atmosphere 995.0 90 > th dose independent rect. 16 13
735 240.42 humidity 50.0 1440 > th dose independent rect. 18 12
760 240.44 wind 9.0 720 < th dose dependent rect. 19 3
762 240.45 humidity 60.0 4320 < th dose dependent rect. 18 2
783 240.48 temperature 15.0 10 > th dose independent rect. 6 20
814 240.54 wind 9.0 10 < th dose independent rect. 8 22
836 240.58 wind 5.0 10 < th dose dependent rect. 2 4
850 240.60 wind 1.0 10 > th dose dependent rect. 6 2
875 240.65 humidity 50.0 4320 < th dose dependent rect. 16 1
891 240.71 radiation 30.0 10 < th dose dependent rect. 16 14
900 240.75 wind 1.0 43200 < th dose dependent rect. 9 1
901 240.75 radiation 40.0 270 < th dose dependent rect. 18 14
903 240.76 humidity 80.0 720 > th dose independent rect. 21 1
910 240.78 wind 7.0 10 < th dose independent rect. 6 21
932 240.85 humidity 90.0 43200 > th dose independent rect. 12 1
958 240.90 temperature 30.0 90 < th dose dependent rect. 11 21
965 240.92 radiation 30.0 30 < th dose dependent rect. 6 5
977 240.96 atmosphere 1000.0 270 > th dose independent rect. 1 2
988 240.97 radiation 1.0 720 > th dose independent rect. 16 13
996 241.01 radiation 10.0 1440 < th dose dependent rect. 18 7
997 241.02 radiation 1.0 720 > th dose independent rect. 16 3