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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0191700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0151) R2 : 0.0034
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0395 (0.0317) R2dN8 : 0.00438 R2N8 : 0.0034
σ : 0.284
deviance : 36.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.74 0.269 2.88 0.0476 0.0789 0.704 -0.00221 1.06 0.0067 9.78 10.83 4020 -- --
32.87 0.267 2.87 0.0338 0.0829 0.621 0.00643 -- 0.00754 9.67 10.8 3945 -- --
32.72 0.266 2.88 0.0494 0.0791 0.709 -- 1.06 0.00624 9.79 10.8 4020 -- --
32.86 0.267 2.87 0.034 0.0818 0.622 -- -- 0.0086 9.93 10.8 3945 -- --
33.09 0.268 2.88 0.048 -- 0.734 -- 1.07 0.00731 -- 10.8 4020 -- --
36.15 0.282 2.87 0.0143 0.118 -- -0.0354 -- 0.0402 8.88 -- -- -- --
36.16 0.282 2.87 0.0132 0.118 -- -- -- 0.0402 8.98 -- -- -- --
33.26 0.269 2.88 0.0344 -- 0.649 -- -- 0.00716 -- 10.8 3955 -- --
32.89 0.267 2.87 -- 0.0819 0.619 -- -- 0.00505 9.88 10.8 3986 -- --
36.95 0.284 2.87 0.0131 -- -- -- -- 0.041 -- -- -- -- --
36.16 0.281 2.87 -- 0.118 -- -- -- 0.0388 8.97 -- -- -- --
33.29 0.269 2.88 -- -- 0.647 -- -- 0.00339 -- 10.8 3955 -- --
36.96 0.284 2.87 -- -- -- -- -- 0.0395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.10 radiation 10.0 10 > th dose independent rect. 6 1
27 32.10 radiation 10.0 10 > th dose dependent rect. 6 1
55 33.28 wind 3.0 10 < th dose dependent rect. 6 1
57 33.43 radiation 10.0 10 < th dose dependent rect. 6 1
58 33.48 atmosphere 1005.0 10 > th dose dependent rect. 6 1
60 33.52 wind 1.0 10 < th dose independent rect. 6 1
63 33.66 humidity 80.0 30 > th dose dependent rect. 6 1
65 33.84 temperature 30.0 30 < th dose dependent rect. 6 1
70 34.06 atmosphere 1010.0 10 < th dose independent sin 6 NA
75 34.13 radiation 40.0 1440 < th dose independent rect. 7 1
85 34.29 wind 1.0 10 < th dose independent rect. 6 4
124 34.45 wind 1.0 30 > th dose independent rect. 6 1
125 34.45 wind 9.0 1440 < th dose independent rect. 7 1
126 34.45 temperature 20.0 30 > th dose independent rect. 6 1
127 34.45 temperature 10.0 1440 > th dose independent rect. 7 1
131 34.45 temperature 30.0 1440 < th dose independent rect. 7 1
135 34.45 humidity 80.0 30 > th dose independent rect. 6 1
136 34.45 humidity 50.0 1440 > th dose independent rect. 7 1
141 34.45 atmosphere 995.0 1440 > th dose independent rect. 7 1
142 34.45 atmosphere 1015.0 1440 < th dose independent rect. 7 1
143 34.45 temperature 10.0 1440 > th dose independent rect. 8 23
150 34.46 temperature 10.0 30 > th dose independent rect. 6 1
152 34.46 temperature 30.0 30 < th dose independent rect. 6 1
153 34.46 humidity 50.0 30 > th dose independent rect. 6 1
156 34.46 humidity 90.0 30 < th dose independent rect. 6 1
157 34.46 atmosphere 995.0 30 > th dose independent rect. 6 1
158 34.46 atmosphere 1015.0 30 < th dose independent rect. 6 1
160 34.46 radiation 20.0 30 < th dose independent rect. 6 1
163 34.46 precipitation 0.1 30 < th dose independent rect. 6 1
164 34.46 wind 9.0 30 < th dose independent rect. 7 23
165 34.46 temperature 10.0 30 > th dose independent rect. 7 23
166 34.46 precipitation 0.1 30 < th dose dependent rect. 6 1
168 34.47 atmosphere 1005.0 30 > th dose independent rect. 6 1
174 34.48 atmosphere 1010.0 10 < th dose independent rect. 24 12
176 34.48 atmosphere 1005.0 90 > th dose dependent rect. 3 4
218 34.56 atmosphere 1010.0 10 < th dose independent rect. 2 10
225 34.61 temperature 10.0 30 > th dose dependent rect. 6 1
243 34.72 wind 3.0 10 < th dose dependent rect. 6 4
251 34.75 atmosphere 1005.0 270 > th dose dependent rect. 3 1
253 34.76 precipitation 0.1 30 < th dose independent rect. 7 23
254 34.76 precipitation 0.1 30 < th dose dependent rect. 7 23
259 34.79 atmosphere 1010.0 10 < th dose independent rect. 14 22
265 34.82 atmosphere 995.0 30 > th dose independent rect. 7 23
296 34.91 wind 3.0 270 > th dose independent rect. 3 1
308 34.97 atmosphere 1010.0 10 < th dose independent rect. 22 13
310 34.98 humidity 90.0 30 < th dose independent rect. 4 3
311 34.98 humidity 90.0 10 < th dose independent rect. 2 5
330 35.00 wind 1.0 10 < th dose dependent rect. 6 17
332 35.01 temperature 25.0 10 > th dose independent rect. 4 3
354 35.06 humidity 90.0 10 < th dose dependent rect. 6 1
363 35.07 atmosphere 1015.0 30 < th dose dependent rect. 6 1
364 35.08 atmosphere 1010.0 10 < th dose independent no NA NA
373 35.10 humidity 50.0 30 > th dose independent rect. 7 23
399 35.16 humidity 70.0 720 > th dose independent rect. 23 10
404 35.17 atmosphere 1015.0 30 < th dose independent rect. 7 23
414 35.19 atmosphere 1010.0 10 < th dose independent rect. 24 23
417 35.20 wind 1.0 10 < th dose independent sin 21 NA
420 35.20 atmosphere 1010.0 10 < th dose independent rect. 24 15
421 35.20 atmosphere 1010.0 10 < th dose independent rect. 18 17
423 35.20 temperature 30.0 10 < th dose independent rect. 7 23
434 35.21 humidity 60.0 270 < th dose independent rect. 8 1
436 35.21 humidity 60.0 4320 < th dose independent rect. 8 1
475 35.21 humidity 60.0 270 < th dose dependent rect. 8 1
549 35.22 wind 1.0 10 < th dose dependent rect. 9 1
557 35.22 humidity 60.0 10 < th dose dependent rect. 16 18
559 35.23 wind 1.0 10 < th dose independent rect. 9 1
561 35.23 humidity 60.0 10 < th dose independent rect. 9 1
629 35.23 humidity 60.0 10 < th dose independent rect. 16 18
634 35.23 humidity 60.0 10 < th dose dependent rect. 9 1
745 35.24 radiation 40.0 10 > th dose dependent sin 12 NA
768 35.25 atmosphere 1010.0 10 < th dose independent rect. 22 23
770 35.25 temperature 25.0 1440 > th dose dependent rect. 7 1
802 35.26 wind 1.0 10 < th dose independent rect. 4 9
805 35.26 atmosphere 1010.0 10 < th dose independent rect. 2 15
808 35.26 temperature 25.0 1440 > th dose dependent rect. 5 4
844 35.27 atmosphere 1010.0 10 < th dose independent rect. 18 15
855 35.27 wind 3.0 10 < th dose dependent rect. 4 6
879 35.28 radiation 40.0 10 > th dose dependent rect. 9 1
930 35.29 atmosphere 1010.0 10 < th dose independent rect. 24 17
931 35.29 atmosphere 1010.0 10 < th dose independent rect. 24 21