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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0488900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.86 (0.0222) R2 : 0.0171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.0468) R2dN8 : 0.0221 R2N8 : 0.0171
σ : 0.419
deviance : 80.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.77 0.414 2.84 -0.0597 0.1 -0.0509 0.203 -1.14 0.147 15.3 1.598 94 -- --
79.26 0.415 2.86 -0.114 0.113 -0.199 -0.0614 -- 0.155 15.5 1.6 135 -- --
77.81 0.411 2.84 -0.0572 0.0887 -0.0293 -- -1.06 0.143 14.6 1.6 74 -- --
79.24 0.415 2.86 -0.114 0.12 -0.217 -- -- 0.143 15.7 1.4 135 -- --
78.18 0.412 2.84 -0.039 -- 0.0372 -- -1.12 0.139 -- 1.517 74 -- --
80.03 0.419 2.86 -0.0582 0.0544 -- -0.17 -- 0.127 13.4 -- -- -- --
80.15 0.419 2.86 -0.064 0.0546 -- -- -- 0.126 13.5 -- -- -- --
79.61 0.416 2.86 -0.108 -- -0.202 -- -- 0.13 -- 1.1 113 -- --
79.27 0.415 2.85 -- 0.111 -0.257 -- -- 0.157 15.5 1.2 113 -- --
80.33 0.419 2.86 -0.0661 -- -- -- -- 0.124 -- -- -- -- --
80.26 0.419 2.86 -- 0.0557 -- -- -- 0.133 13.5 -- -- -- --
79.84 0.416 2.86 -- -- -0.202 -- -- 0.145 -- 0.9 105 -- --
80.45 0.419 2.86 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.70 radiation 30.0 10 < th dose dependent rect. 8 1
3 73.74 wind 3.0 10 < th dose independent rect. 8 1
4 73.74 wind 5.0 10 < th dose dependent rect. 8 1
5 73.74 humidity 60.0 10 > th dose dependent rect. 8 1
6 73.75 atmosphere 1000.0 10 > th dose independent rect. 9 23
9 73.81 radiation 30.0 10 < th dose independent rect. 8 1
10 73.83 humidity 70.0 10 > th dose independent rect. 8 1
14 73.86 atmosphere 1015.0 10 < th dose dependent rect. 8 1
17 73.89 temperature 30.0 30 < th dose dependent rect. 8 1
18 73.92 wind 1.0 10 > th dose independent rect. 8 1
21 73.92 temperature 10.0 10 > th dose independent rect. 8 1
23 73.92 temperature 30.0 10 < th dose independent rect. 8 1
24 73.92 humidity 50.0 10 > th dose independent rect. 8 1
26 73.92 atmosphere 995.0 10 > th dose independent rect. 8 1
27 73.92 atmosphere 1010.0 10 < th dose independent rect. 8 1
29 73.92 radiation 1.0 10 > th dose independent rect. 8 1
30 73.92 precipitation 0.1 10 < th dose independent rect. 8 1
31 73.92 temperature 10.0 10 > th dose independent rect. 9 23
32 73.92 precipitation 0.1 10 < th dose dependent rect. 8 1
40 74.04 atmosphere 995.0 10 > th dose dependent rect. 8 1
44 74.07 temperature 10.0 10 > th dose dependent rect. 8 1
51 74.15 humidity 90.0 10 < th dose independent rect. 8 1
89 74.40 wind 1.0 10 > th dose dependent rect. 8 1
91 74.43 radiation 1.0 30 > th dose dependent rect. 8 1
94 74.46 humidity 90.0 30 < th dose dependent rect. 8 1
96 74.48 precipitation 0.1 10 < th dose independent rect. 9 23
98 74.48 precipitation 0.1 10 < th dose dependent rect. 9 23
100 74.52 temperature 10.0 1440 > th dose independent rect. 9 1
103 74.52 atmosphere 995.0 1440 > th dose independent rect. 9 1
106 74.52 atmosphere 1015.0 1440 < th dose independent rect. 9 1
107 74.52 temperature 10.0 1440 > th dose independent rect. 10 23
125 74.83 humidity 50.0 1440 > th dose independent rect. 9 1
129 75.09 atmosphere 1015.0 10 < th dose independent rect. 9 23
131 75.16 wind 9.0 30 < th dose independent rect. 9 23
155 75.74 humidity 50.0 10 > th dose independent rect. 9 23
184 76.10 atmosphere 995.0 90 > th dose dependent rect. 19 14
188 76.18 radiation 10.0 10 > th dose independent rect. 6 3
217 76.27 wind 1.0 90 > th dose independent rect. 9 22
233 76.39 radiation 30.0 90 < th dose independent rect. 19 14
238 76.45 atmosphere 1000.0 90 > th dose independent rect. 19 14
276 76.69 precipitation 0.1 90 < th dose independent rect. 19 14
278 76.69 precipitation 0.1 90 < th dose dependent rect. 19 14
296 76.70 atmosphere 1000.0 30 > th dose dependent rect. 14 19
298 76.71 temperature 30.0 90 < th dose independent rect. 19 14
299 76.72 humidity 60.0 90 > th dose independent rect. 19 14
303 76.74 humidity 90.0 720 > th dose dependent rect. 10 3
305 76.75 temperature 10.0 90 > th dose independent rect. 9 10
306 76.75 atmosphere 1015.0 90 < th dose independent rect. 9 10
307 76.75 temperature 10.0 90 > th dose independent rect. 19 14
316 76.77 precipitation 0.1 90 < th dose independent rect. 9 10
317 76.77 wind 9.0 90 < th dose independent rect. 19 14
318 76.77 precipitation 0.1 90 < th dose dependent rect. 9 10
334 76.81 humidity 90.0 720 > th dose independent rect. 10 3
337 76.83 precipitation 0.1 270 > th dose independent rect. 9 1
341 76.83 precipitation 0.1 270 > th dose dependent rect. 9 1
348 76.85 temperature 30.0 90 < th dose independent rect. 9 22
355 76.86 temperature 10.0 30 > th dose dependent rect. 9 23
357 76.87 precipitation 0.1 720 > th dose independent rect. 9 4
358 76.87 atmosphere 995.0 90 > th dose independent rect. 9 10
359 76.87 precipitation 0.1 720 > th dose dependent rect. 9 4
365 76.88 wind 1.0 30 < th dose dependent rect. 11 2
415 77.01 wind 9.0 90 < th dose independent rect. 9 10
416 77.01 humidity 60.0 4320 < th dose dependent rect. 10 1
427 77.04 wind 1.0 90 < th dose independent rect. 11 1
428 77.04 humidity 60.0 4320 < th dose independent rect. 10 1
431 77.04 humidity 80.0 10 < th dose independent rect. 23 10
434 77.05 wind 1.0 90 > th dose independent rect. 9 10
453 77.13 humidity 80.0 4320 < th dose independent rect. 21 13
454 77.13 temperature 25.0 90 > th dose dependent rect. 19 14
464 77.19 precipitation 0.1 720 > th dose independent rect. 6 1
465 77.19 precipitation 0.1 720 > th dose dependent rect. 6 1
468 77.20 wind 1.0 90 > th dose independent rect. 19 14
506 77.23 humidity 80.0 4320 > th dose independent rect. 21 13
537 77.30 humidity 60.0 4320 > th dose independent rect. 23 12
543 77.31 humidity 60.0 4320 > th dose independent rect. 6 5
544 77.31 humidity 60.0 4320 > th dose independent rect. 3 8
566 77.33 humidity 60.0 14400 > th dose independent rect. 21 1
610 77.40 temperature 10.0 1440 > th dose independent rect. 10 10
614 77.40 temperature 10.0 1440 > th dose independent rect. 20 14
618 77.40 atmosphere 995.0 1440 > th dose independent rect. 20 14
624 77.42 humidity 80.0 720 < th dose independent rect. 24 1
626 77.42 atmosphere 1005.0 43200 > th dose independent rect. 23 1
629 77.42 humidity 80.0 720 < th dose dependent rect. 24 1
642 77.45 atmosphere 1005.0 43200 < th dose independent rect. 5 1
652 77.46 radiation 10.0 10 > th dose independent rect. 14 19
654 77.46 humidity 80.0 4320 < th dose dependent rect. 22 1
657 77.47 humidity 80.0 30 < th dose independent rect. 23 1
659 77.47 atmosphere 1005.0 43200 < th dose independent rect. 24 1
671 77.47 humidity 80.0 30 < th dose dependent rect. 23 1
683 77.48 humidity 80.0 10 < th dose independent rect. 24 4
688 77.48 atmosphere 1015.0 90 < th dose independent rect. 21 10
694 77.48 humidity 80.0 10 < th dose dependent rect. 24 4
699 77.48 wind 9.0 90 < th dose dependent rect. 9 22
708 77.49 radiation 10.0 90 < th dose independent rect. 21 22
721 77.50 atmosphere 1005.0 30 > th dose independent rect. 14 19
723 77.50 temperature 25.0 90 < th dose dependent rect. 10 1
725 77.50 wind 3.0 90 < th dose dependent rect. 10 20
739 77.51 radiation 1.0 30 > th dose dependent rect. 5 4
778 77.55 atmosphere 1005.0 43200 > th dose independent rect. 5 1
792 77.56 wind 1.0 90 > th dose independent rect. 7 14
805 77.58 radiation 10.0 90 < th dose independent rect. 21 15
812 77.59 temperature 25.0 90 > th dose independent rect. 9 22
855 77.64 atmosphere 1005.0 43200 < th dose independent rect. 7 1
870 77.65 humidity 80.0 4320 > th dose independent rect. 3 7
886 77.66 humidity 50.0 10 > th dose independent rect. 9 10
891 77.66 temperature 10.0 90 > th dose dependent rect. 9 10
919 77.68 radiation 1.0 90 > th dose independent rect. 9 21
923 77.68 atmosphere 1010.0 43200 < th dose dependent rect. 20 1
935 77.69 wind 1.0 90 > th dose independent rect. 21 10
948 77.70 atmosphere 1005.0 43200 > th dose independent rect. 5 4
952 77.70 atmosphere 1005.0 43200 < th dose independent rect. 23 9
957 77.70 atmosphere 1010.0 43200 < th dose dependent rect. 23 1
958 77.70 wind 5.0 43200 > th dose dependent rect. 13 3
963 77.70 atmosphere 1010.0 43200 < th dose dependent rect. 20 4
967 77.71 humidity 80.0 4320 < th dose independent sin 9 NA
990 77.72 humidity 50.0 90 > th dose independent rect. 9 10
993 77.72 temperature 30.0 10 < th dose independent rect. 7 14
997 77.72 radiation 30.0 30 > th dose dependent rect. 11 1