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Os01g0971900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to BPM.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.03 (0.0278) R2 : 0.797
β1 : 2.13 (0.102) R2dD : 0.202 R2D : 0.171
β2 : 2.68 (0.0723) R2dC : 0.616 R2C : 0.595
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0594) R2dN8 : 0.0233 R2N8 : -0.0128
σ : 0.523
deviance : 124.82
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.76 0.485 9.14 1.6 2.67 -0.12 0.276 -4.27 0.259 19 30.55 1167 -- --
107.54 0.483 9.06 2.28 2.67 -0.628 0.329 -- 0.249 18.9 30.99 1171 -- --
106.9 0.482 9.15 1.52 2.68 -0.1 -- -4.47 0.245 19 29.78 1166 -- --
107.67 0.483 9.06 2.28 2.68 -0.601 -- -- 0.26 19 30.8 1171 -- --
477.69 1.02 9.11 1.21 -- -0.0368 -- -5.07 0.154 -- 28.5 1306 -- --
124.51 0.523 9.03 2.14 2.68 -- 0.351 -- 0.371 18.8 -- -- -- --
124.82 0.523 9.03 2.13 2.68 -- -- -- 0.372 18.8 -- -- -- --
479.54 1.02 8.97 1.97 -- 1.3 -- -- 0.346 -- 28.5 1306 -- --
240.5 0.722 9.1 -- 2.67 -0.303 -- -- 0.0953 18.9 30.7 1109 -- --
501.72 1.05 8.97 2.07 -- -- -- -- 0.32 -- -- -- -- --
244.67 0.732 9.08 -- 2.66 -- -- -- 0.134 18.9 -- -- -- --
546.56 1.09 9.11 -- -- 1.33 -- -- -0.308 -- 7.1 47520 -- --
615.17 1.16 9.02 -- -- -- -- -- 0.0902 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.00 radiation 1.0 30 < th dose independent rect. 22 19
3 93.50 radiation 1.0 30 < th dose dependent rect. 22 19
8 94.46 precipitation 0.1 270 < th dose independent rect. 16 14
9 94.46 precipitation 0.1 270 < th dose dependent rect. 16 14
10 94.66 atmosphere 1000.0 270 > th dose independent rect. 21 6
16 95.42 atmosphere 1000.0 270 > th dose independent rect. 22 4
26 96.17 radiation 1.0 30 < th dose independent rect. 22 10
30 96.24 radiation 1.0 30 < th dose independent rect. 22 8
36 96.33 precipitation 0.1 270 < th dose independent rect. 3 18
37 96.33 precipitation 0.1 270 < th dose dependent rect. 3 18
44 96.71 wind 9.0 270 < th dose independent rect. 6 10
45 96.74 radiation 1.0 30 < th dose dependent rect. 22 10
49 96.77 atmosphere 995.0 270 > th dose dependent rect. 22 4
50 96.79 radiation 1.0 30 < th dose dependent rect. 22 8
66 97.05 temperature 10.0 270 > th dose independent rect. 6 10
67 97.05 atmosphere 1015.0 270 < th dose independent rect. 6 10
68 97.05 temperature 10.0 270 > th dose independent rect. 16 14
69 97.05 radiation 40.0 270 < th dose independent rect. 16 14
73 97.21 wind 9.0 270 < th dose independent rect. 16 14
74 97.28 precipitation 0.1 270 < th dose independent rect. 6 10
75 97.28 precipitation 0.1 270 < th dose dependent rect. 6 10
88 97.55 atmosphere 1015.0 270 < th dose independent rect. 3 18
91 97.60 humidity 50.0 270 > th dose dependent rect. 21 5
99 97.67 atmosphere 995.0 270 > th dose dependent rect. 21 6
104 97.84 wind 9.0 270 < th dose independent rect. 21 6
105 97.86 temperature 10.0 270 > th dose independent rect. 21 6
106 97.86 temperature 30.0 270 < th dose independent rect. 21 6
107 97.86 humidity 50.0 270 > th dose independent rect. 21 6
111 97.86 radiation 1.0 270 < th dose independent rect. 21 6
116 97.86 temperature 10.0 270 > th dose independent rect. 3 18
117 97.86 radiation 1.0 270 < th dose dependent rect. 21 6
135 98.06 precipitation 0.1 270 < th dose independent rect. 21 6
136 98.06 precipitation 0.1 270 < th dose dependent rect. 21 6
137 98.07 precipitation 0.1 270 < th dose independent rect. 2 9
138 98.07 atmosphere 995.0 270 > th dose independent rect. 6 10
139 98.07 precipitation 0.1 270 < th dose dependent rect. 2 9
177 98.65 humidity 50.0 270 > th dose independent rect. 11 15
199 98.86 wind 9.0 270 < th dose independent rect. 3 18
201 98.86 atmosphere 995.0 270 > th dose dependent rect. 23 2
207 98.92 radiation 1.0 30 < th dose independent sin 8 NA
320 99.30 wind 9.0 270 < th dose independent rect. 11 15
321 99.30 radiation 1.0 30 < th dose dependent sin 8 NA
335 99.42 wind 9.0 90 < th dose dependent rect. 22 6
337 99.45 humidity 50.0 90 > th dose dependent rect. 13 15
349 99.67 temperature 10.0 270 > th dose independent rect. 2 9
350 99.67 atmosphere 995.0 270 > th dose independent rect. 2 9
351 99.67 atmosphere 1015.0 270 < th dose independent rect. 2 9
352 99.67 temperature 10.0 270 > th dose independent rect. 11 15
354 99.68 wind 9.0 270 < th dose independent rect. 2 9
371 99.82 humidity 50.0 270 > th dose independent rect. 2 9
441 100.15 radiation 1.0 30 > th dose independent sin 7 NA
443 100.16 temperature 10.0 90 > th dose dependent rect. 17 15
447 100.18 radiation 40.0 270 < th dose dependent rect. 16 15
449 100.19 wind 9.0 270 < th dose dependent rect. 22 3
457 100.26 atmosphere 995.0 90 > th dose independent rect. 4 18
466 100.37 temperature 30.0 270 < th dose independent rect. 2 9
467 100.38 atmosphere 995.0 90 > th dose independent rect. 17 15
481 100.49 atmosphere 995.0 270 > th dose independent rect. 11 15
559 100.79 humidity 50.0 90 > th dose independent rect. 17 15
596 101.02 precipitation 0.1 10 < th dose independent rect. 18 15
597 101.02 precipitation 0.1 10 < th dose dependent rect. 18 15
640 101.36 radiation 40.0 270 < th dose independent rect. 2 9
674 101.44 precipitation 0.1 270 < th dose independent rect. 11 15
675 101.44 precipitation 0.1 270 < th dose dependent rect. 11 15
682 101.50 wind 1.0 270 > th dose independent rect. 7 9
684 101.51 humidity 50.0 270 > th dose independent rect. 7 9
721 101.66 temperature 30.0 90 < th dose independent rect. 4 9
722 101.66 atmosphere 1015.0 90 < th dose independent rect. 17 15
724 101.67 wind 1.0 270 > th dose independent rect. 2 19
777 101.87 temperature 10.0 10 > th dose dependent rect. 18 15
805 101.97 atmosphere 1015.0 270 < th dose independent rect. 22 4
806 101.98 temperature 15.0 10 > th dose independent rect. 18 15
932 102.17 temperature 10.0 270 > th dose dependent rect. 15 7
971 102.34 wind 9.0 10 < th dose independent rect. 9 9
977 102.36 wind 7.0 10 < th dose independent rect. 18 15
978 102.37 precipitation 0.1 10 < th dose independent rect. 9 9
979 102.37 precipitation 0.1 10 < th dose dependent rect. 9 9
999 102.41 temperature 10.0 10 > th dose independent rect. 9 9