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Os12g0493900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.29 (0.0563) R2 : 0.92
β1 : -1.45 (0.207) R2dD : 0.00903 R2D : 0.0204
β2 : 6.47 (0.148) R2dC : 0.382 R2C : 0.615
β3 : -7.38 (0.195) R2dE : 0.289 R2E : 0.526
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.183 (0.121) R2dN8 : 0.000526 R2N8 : -0.00137
σ : 1.05
deviance : 510.63
__
_____
C
peak time of C : 14.7
E
wheather : temperature
threshold : 7.584
memory length : 154
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.9
open length of G : 17.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
520.05 1.07 8.26 -1.29 6.46 -7.65 -1.92 -0.171 0.296 14.7 9.064 220 18.6 17.8
500.3 1.04 8.27 -1.43 6.44 -7.41 -1.88 -- 0.21 14.7 7.723 163 18.9 17.8
515.29 1.06 8.27 -1.27 6.53 -7.44 -- 0.447 0.265 14.7 8.384 176 18.8 17.8
510.63 1.05 8.29 -1.45 6.47 -7.38 -- -- 0.183 14.7 7.584 154 18.9 17.8
1304.69 1.68 8.57 -2.64 -- -9.6 -- -2.63 0.0709 -- -15.1 78 19.4 16.1
1487.06 1.81 8.47 -2.14 9.33 -- -1.71 -- -0.23 16.1 -- -- -- --
1495.33 1.81 8.48 -2.16 9.32 -- -- -- -0.239 16.1 -- -- -- --
983.47 1.46 8.36 -1.87 -- -10.4 -- -- 0.661 -- -4.903 243 18.5 15.8
562.46 1.1 8.22 -- 6.65 -7.49 -- -- 0.433 14.7 9.265 151 19 17.8
6219.68 3.69 8.44 -2.54 -- -- -- -- -0.488 -- -- -- -- --
1618.41 1.88 8.42 -- 9.36 -- -- -- 0.00145 16.1 -- -- -- --
909.64 1.4 8.16 -- -- -11.5 -- -- 0.625 -- 1.715 353 17.7 15.8
6389.77 3.73 8.37 -- -- -- -- -- -0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 556.71 temperature 10.0 270 > th dose dependent rect. 18 18
10 638.04 temperature 10.0 10 > th dose dependent rect. 20 18
13 641.57 temperature 10.0 270 > th dose dependent rect. 6 6
31 685.79 temperature 10.0 90 > th dose dependent rect. 19 9
32 686.06 temperature 15.0 270 > th dose independent rect. 17 9
34 692.94 temperature 15.0 270 > th dose independent rect. 18 18
35 693.86 humidity 50.0 270 > th dose independent rect. 17 9
37 699.07 radiation 40.0 270 < th dose dependent rect. 17 9
41 701.11 radiation 20.0 270 < th dose independent rect. 17 9
44 701.11 temperature 10.0 270 > th dose independent rect. 2 15
45 701.11 atmosphere 1015.0 270 < th dose independent rect. 2 15
50 705.45 temperature 15.0 270 > th dose independent rect. 7 15
52 706.27 precipitation 0.1 270 < th dose independent rect. 2 15
53 706.27 precipitation 0.1 270 < th dose dependent rect. 2 15
54 707.67 wind 9.0 270 < th dose independent rect. 17 9
55 709.69 temperature 15.0 270 > th dose independent rect. 17 20
57 711.58 temperature 20.0 270 > th dose independent rect. 6 7
60 713.06 radiation 1.0 90 < th dose dependent sin 13 NA
63 714.73 precipitation 0.1 270 < th dose independent rect. 13 17
64 714.73 precipitation 0.1 270 < th dose dependent rect. 13 17
67 716.02 radiation 1.0 270 > th dose independent rect. 6 7
68 717.36 wind 9.0 270 < th dose independent rect. 6 7
71 718.69 wind 9.0 270 < th dose independent rect. 2 15
73 719.57 wind 9.0 270 < th dose independent rect. 13 17
75 720.01 precipitation 0.1 270 < th dose independent rect. 6 7
76 720.01 precipitation 0.1 270 < th dose dependent rect. 6 7
78 721.37 atmosphere 995.0 270 > th dose independent rect. 6 7
79 721.37 atmosphere 1015.0 270 < th dose independent rect. 6 7
80 721.37 temperature 10.0 270 > th dose independent rect. 13 17
85 722.68 atmosphere 995.0 270 > th dose independent rect. 17 9
90 726.41 temperature 10.0 10 > th dose dependent rect. 8 6
91 727.00 radiation 1.0 270 > th dose independent rect. 12 18
96 729.34 temperature 15.0 90 > th dose independent rect. 19 9
112 738.70 humidity 50.0 270 > th dose independent rect. 6 7
115 741.05 precipitation 0.1 270 < th dose independent rect. 17 9
116 741.05 precipitation 0.1 270 < th dose dependent rect. 17 9
133 745.34 wind 7.0 270 < th dose independent rect. 7 5
139 748.23 atmosphere 1015.0 270 < th dose independent rect. 7 15
140 748.44 wind 7.0 270 < th dose independent rect. 22 9
144 748.98 wind 1.0 90 > th dose independent rect. 13 6
167 755.27 wind 9.0 90 < th dose independent rect. 19 18
170 756.33 temperature 10.0 270 > th dose independent rect. 22 9
171 756.33 temperature 30.0 270 < th dose independent rect. 22 9
172 756.33 humidity 50.0 270 > th dose independent rect. 22 9
174 756.33 atmosphere 995.0 270 > th dose independent rect. 22 9
175 756.33 radiation 40.0 270 < th dose independent rect. 22 9
187 758.06 precipitation 0.1 90 < th dose independent rect. 13 6
188 758.06 precipitation 0.1 90 < th dose dependent rect. 13 6
198 759.28 temperature 10.0 90 > th dose independent rect. 13 6
200 759.28 atmosphere 1010.0 90 < th dose independent rect. 13 6
203 759.28 atmosphere 995.0 90 > th dose independent rect. 19 18
204 759.52 wind 9.0 90 < th dose independent rect. 13 6
210 761.03 humidity 50.0 270 > th dose independent rect. 7 5
218 761.36 precipitation 0.1 270 < th dose independent rect. 22 9
219 761.36 precipitation 0.1 270 < th dose dependent rect. 22 9
233 763.99 radiation 1.0 90 < th dose independent sin 13 NA
241 765.87 wind 9.0 270 < th dose independent rect. 17 20
242 765.92 precipitation 0.1 270 < th dose independent rect. 13 4
243 765.92 precipitation 0.1 270 < th dose dependent rect. 13 4
244 766.67 temperature 10.0 270 > th dose independent rect. 13 4
246 766.67 atmosphere 1010.0 270 < th dose independent rect. 13 4
249 767.10 wind 9.0 270 < th dose independent rect. 13 4
251 767.49 atmosphere 995.0 270 > th dose independent rect. 2 15
253 768.59 humidity 50.0 270 > th dose independent rect. 18 18
259 769.75 wind 9.0 270 < th dose independent rect. 7 15
263 770.18 wind 1.0 270 > th dose independent rect. 13 4
268 770.52 temperature 30.0 90 < th dose independent rect. 19 9
269 770.52 humidity 50.0 90 > th dose independent rect. 19 9
271 770.52 atmosphere 995.0 90 > th dose independent rect. 19 9
272 770.52 radiation 1.0 90 < th dose independent rect. 19 9
279 770.52 radiation 30.0 90 < th dose dependent rect. 19 9
281 770.53 radiation 10.0 90 < th dose dependent rect. 19 9
284 770.73 radiation 1.0 90 > th dose independent sin 13 NA
285 770.79 temperature 30.0 270 < th dose independent rect. 17 9
288 771.98 radiation 1.0 270 > th dose independent rect. 13 4
289 772.15 radiation 40.0 90 < th dose independent rect. 13 6
291 773.01 wind 9.0 90 < th dose independent rect. 19 9
296 774.22 atmosphere 1015.0 270 < th dose independent rect. 18 18
301 775.58 radiation 1.0 270 > th dose independent rect. 12 6
316 776.95 atmosphere 995.0 270 > th dose independent rect. 17 20
317 778.38 humidity 50.0 270 > th dose independent rect. 17 20
322 781.10 wind 1.0 270 > th dose independent rect. 6 7
325 782.72 precipitation 0.1 90 < th dose independent rect. 19 18
326 782.72 precipitation 0.1 90 < th dose dependent rect. 19 18
327 782.92 wind 1.0 270 > th dose independent rect. 7 5
329 783.40 temperature 15.0 10 > th dose independent rect. 20 18
337 786.63 temperature 20.0 10 > th dose independent rect. 8 6
365 789.53 precipitation 0.1 90 < th dose independent rect. 19 9
366 789.53 precipitation 0.1 90 < th dose dependent rect. 19 9
374 791.28 precipitation 0.1 270 < th dose independent rect. 7 15
375 791.28 precipitation 0.1 270 < th dose dependent rect. 7 15
379 792.44 wind 9.0 10 < th dose independent rect. 8 6
381 792.91 atmosphere 995.0 270 > th dose independent rect. 13 17
386 793.36 radiation 1.0 10 > th dose independent rect. 8 6
387 793.97 humidity 90.0 270 < th dose independent rect. 12 6
391 794.60 atmosphere 1010.0 90 < th dose independent rect. 19 9
395 794.79 precipitation 0.1 270 < th dose independent rect. 17 20
396 794.79 precipitation 0.1 270 < th dose dependent rect. 17 20
402 796.31 temperature 10.0 10 > th dose independent rect. 8 6
404 796.31 atmosphere 995.0 10 > th dose independent rect. 8 6
405 796.31 atmosphere 1015.0 10 < th dose independent rect. 8 6
406 796.31 precipitation 0.1 10 < th dose independent rect. 8 6
407 796.31 temperature 10.0 10 > th dose independent rect. 14 18
408 796.31 precipitation 0.1 10 < th dose dependent rect. 8 6
414 798.01 wind 9.0 10 < th dose independent rect. 14 18
432 801.17 temperature 10.0 270 > th dose dependent rect. 12 6
433 801.35 radiation 40.0 270 < th dose dependent rect. 22 9
438 802.44 wind 9.0 270 < th dose dependent rect. 7 5
445 803.95 radiation 40.0 10 < th dose independent rect. 14 18
461 805.24 temperature 10.0 270 > th dose dependent rect. 13 4
464 805.73 humidity 90.0 270 < th dose independent rect. 13 4
473 806.34 atmosphere 1015.0 270 < th dose independent rect. 17 9
517 809.43 atmosphere 1015.0 270 < th dose independent rect. 17 20
532 811.63 radiation 40.0 90 < th dose independent rect. 13 19
536 811.78 atmosphere 995.0 270 > th dose independent rect. 13 4
558 813.70 wind 1.0 270 > th dose independent rect. 17 9
576 814.96 atmosphere 995.0 270 > th dose independent rect. 12 6
577 815.03 atmosphere 995.0 270 > th dose independent rect. 12 19
636 823.66 precipitation 0.1 10 < th dose independent rect. 14 6
638 823.66 precipitation 0.1 10 < th dose dependent rect. 14 6
652 824.34 humidity 90.0 90 < th dose independent rect. 8 6
670 826.28 temperature 10.0 1440 > th dose independent rect. 9 6
673 826.28 temperature 10.0 1440 > th dose independent rect. 15 18
696 827.13 wind 1.0 10 > th dose independent rect. 8 6
705 827.40 humidity 90.0 10 < th dose independent rect. 8 6
729 829.35 humidity 50.0 270 > th dose independent rect. 7 15
734 829.86 wind 9.0 10 < th dose independent rect. 20 18
763 832.77 wind 1.0 10 > th dose independent rect. 14 6
783 833.99 temperature 10.0 10 > th dose independent rect. 14 6
785 833.99 atmosphere 1010.0 10 < th dose independent rect. 14 6
788 833.99 atmosphere 995.0 10 > th dose independent rect. 20 18
815 835.99 atmosphere 995.0 270 > th dose independent rect. 7 15
817 836.26 wind 9.0 10 < th dose independent rect. 14 6
819 836.39 atmosphere 1015.0 10 < th dose independent rect. 20 18
823 836.78 temperature 10.0 10 > th dose dependent rect. 14 6
882 840.77 radiation 40.0 10 < th dose independent rect. 14 6
909 842.80 temperature 15.0 270 > th dose independent rect. 7 18
915 843.33 wind 1.0 270 > th dose independent rect. 12 18
989 851.25 humidity 50.0 270 > th dose dependent rect. 22 9
997 851.59 temperature 10.0 270 > th dose dependent rect. 14 2
999 851.75 radiation 1.0 270 > th dose independent sin 16 NA