Os01g0844800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pumilio RBD (Fragment).
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Os01g0844800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pumilio RBD (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.61 | 0.303 | 9.82 | 1.21 | 0.997 | -0.529 | 0.971 | 0.0295 | 0.547 | 19.2 | 82.73 | 1241 | -- | -- |
| 41.59 | 0.3 | 9.82 | 1.21 | 1 | -0.534 | 0.959 | -- | 0.551 | 19.3 | 83.87 | 1222 | -- | -- |
| 44.1 | 0.309 | 9.82 | 1.2 | 1 | -0.546 | -- | 0.108 | 0.553 | 19.3 | 83.41 | 1221 | -- | -- |
| 44.11 | 0.309 | 9.82 | 1.18 | 1 | -0.539 | -- | -- | 0.55 | 19.3 | 83.98 | 1222 | -- | -- |
| 95.13 | 0.454 | 9.81 | 1.14 | -- | -0.527 | -- | -0.0624 | 0.515 | -- | 87 | 1359 | -- | -- |
| 47.69 | 0.324 | 9.82 | 1.13 | 0.997 | -- | 1.02 | -- | 0.559 | 18.9 | -- | -- | -- | -- |
| 50.35 | 0.332 | 9.82 | 1.11 | 0.999 | -- | -- | -- | 0.561 | 18.9 | -- | -- | -- | -- |
| 95 | 0.454 | 9.8 | 1.14 | -- | -0.569 | -- | -- | 0.54 | -- | 88 | 1359 | -- | -- |
| 78.38 | 0.412 | 9.85 | -- | 1.11 | -0.491 | -- | -- | 0.46 | 19 | 105.9 | 1988 | -- | -- |
| 102.8 | 0.474 | 9.8 | 1.09 | -- | -- | -- | -- | 0.542 | -- | -- | -- | -- | -- |
| 82.67 | 0.425 | 9.85 | -- | 0.987 | -- | -- | -- | 0.438 | 19 | -- | -- | -- | -- |
| 112.7 | 0.494 | 9.84 | -- | -- | -0.948 | -- | -- | 0.359 | -- | 74.08 | 47520 | -- | -- |
| 133.95 | 0.54 | 9.83 | -- | -- | -- | -- | -- | 0.422 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.81 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 4 | 40.10 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 6 | 40.12 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 13 | 40.31 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 4 |
| 14 | 40.33 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 21 | 40.48 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 26 | 40.52 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 35 | 40.63 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 15 |
| 42 | 40.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 52 | 40.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 53 | 40.92 | radiation | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 58 | 40.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 66 | 41.00 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 91 | 41.12 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 124 | 41.19 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 145 | 41.25 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 160 | 41.29 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 165 | 41.30 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 196 | 41.36 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 203 | 41.38 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 209 | 41.39 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 225 | 41.42 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 227 | 41.43 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 245 | 41.44 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 308 | 41.54 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 309 | 41.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 311 | 41.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 312 | 41.55 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 316 | 41.56 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 5 |
| 319 | 41.57 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 21 |
| 329 | 41.59 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 341 | 41.61 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 6 |
| 346 | 41.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 349 | 41.62 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 19 |
| 351 | 41.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 359 | 41.63 | humidity | 50.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 367 | 41.65 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 19 |
| 371 | 41.66 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 396 | 41.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 401 | 41.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 410 | 41.71 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 424 | 41.73 | wind | 7.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 426 | 41.74 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 2 |
| 453 | 41.77 | wind | 7.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 459 | 41.77 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 464 | 41.78 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 478 | 41.79 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 509 | 41.82 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 19 | 9 |
| 523 | 41.83 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 17 |
| 543 | 41.85 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 551 | 41.86 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 553 | 41.86 | radiation | 1.0 | 30 | < th | dose independent | rect. | 19 | 13 |
| 599 | 41.91 | wind | 3.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 610 | 41.92 | humidity | 80.0 | 720 | > th | dose independent | rect. | 18 | 2 |
| 617 | 41.92 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 621 | 41.93 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 761 | 42.05 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 785 | 42.06 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 824 | 42.09 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 842 | 42.10 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 846 | 42.10 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 4 | 12 |
| 856 | 42.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 883 | 42.15 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 887 | 42.15 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 904 | 42.16 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 910 | 42.17 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 16 | 16 |
| 911 | 42.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 912 | 42.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 919 | 42.17 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 16 | 16 |
| 920 | 42.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 923 | 42.18 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 932 | 42.18 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 933 | 42.18 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 974 | 42.20 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 982 | 42.21 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 986 | 42.21 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 993 | 42.21 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 994 | 42.21 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 6 |