Os12g0574400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to BPM.
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Os12g0574400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to BPM.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.83 | 0.39 | 8.8 | -1.35 | 1.28 | -1.24 | 1.38 | -1.08 | 0.58 | 23.3 | 78.21 | 1310 | 10.3 | 3.95 |
| 71.36 | 0.393 | 8.79 | -1.22 | 1.32 | -1.2 | 0.985 | -- | 0.612 | 23.3 | 78.78 | 1286 | 10.2 | 4.4 |
| 75.37 | 0.404 | 8.8 | -1.31 | 1.27 | -1.19 | -- | -0.393 | 0.589 | 23.3 | 79 | 1303 | 10.3 | 4.03 |
| 75.66 | 0.405 | 8.79 | -1.25 | 1.3 | -1.2 | -- | -- | 0.615 | 23.3 | 78.68 | 1288 | 10.1 | 4.43 |
| 127.55 | 0.526 | 8.78 | -1.28 | -- | -1.33 | -- | -0.0708 | 0.52 | -- | 79 | 1718 | 9.95 | 4.4 |
| 117.26 | 0.508 | 8.84 | -1.37 | 0.812 | -- | 0.865 | -- | 0.349 | 23 | -- | -- | -- | -- |
| 120.43 | 0.514 | 8.84 | -1.4 | 0.807 | -- | -- | -- | 0.345 | 23.1 | -- | -- | -- | -- |
| 127.25 | 0.525 | 8.79 | -1.3 | -- | -1.4 | -- | -- | 0.519 | -- | 79 | 1700 | 9.98 | 4.69 |
| 116.42 | 0.503 | 8.79 | -- | 1.37 | -1.27 | -- | -- | 0.727 | 23.3 | 79.18 | 1279 | 10.7 | 4.1 |
| 161.03 | 0.593 | 8.82 | -1.38 | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
| 172.33 | 0.614 | 8.81 | -- | 0.794 | -- | -- | -- | 0.502 | 23 | -- | -- | -- | -- |
| 157.13 | 0.584 | 8.78 | -- | -- | -1.64 | -- | -- | 0.693 | -- | 84.86 | 19017 | 10.9 | 3.96 |
| 211.59 | 0.679 | 8.79 | -- | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.31 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 2 | 85.46 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 4 | 86.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 5 | 86.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 7 | 86.89 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 12 | 87.14 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 17 | 87.33 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 22 | 87.62 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 30 | 88.03 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 33 | 88.11 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 39 | 88.25 | humidity | 90.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 51 | 88.54 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 70 | 88.76 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 80 | 88.86 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 87 | 88.94 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 2 | 14 |
| 91 | 88.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 137 | 89.33 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 170 | 89.52 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 1 | NA |
| 237 | 90.00 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 258 | 90.14 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 271 | 90.21 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 291 | 90.33 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 294 | 90.34 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 461 | 91.02 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 525 | 91.23 | humidity | 60.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 544 | 91.31 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 550 | 91.33 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 18 | 10 |
| 670 | 91.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 23 |
| 672 | 91.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 688 | 91.74 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 721 | 91.85 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 723 | 91.86 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 725 | 91.86 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 888 | 92.29 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 19 | 9 |
| 912 | 92.33 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 939 | 92.38 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 949 | 92.40 | humidity | 60.0 | 1440 | > th | dose dependent | no | NA | NA |