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Os04g0201200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.92 (0.0235) R2 : 0.836
β1 : 1.48 (0.0858) R2dD : 0.112 R2D : 0.0951
β2 : 1.87 (0.0819) R2dC : 0.342 R2C : 0.609
β3 : -1.08 (0.0789) R2dE : 0.123 R2E : 0.39
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0107 (0.0503) R2dN8 : 2.04e-05 R2N8 : 0.000192
σ : 0.438
deviance : 88.39
__
_____
C
peak time of C : 16.9
E
wheather : wind
threshold : 4.099
memory length : 275
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.1
open length of G : 2.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.18 0.441 9.92 1.48 1.87 -1.07 0.257 -0.0828 -0.0116 16.9 4.255 272 3.08 2.07
88.16 0.437 9.92 1.48 1.87 -1.07 0.301 -- -0.0152 16.9 4.097 275 3.1 2.08
88.25 0.438 9.92 1.47 1.86 -1.07 -- -0.236 -0.0119 16.9 4.22 275 3.08 2.07
88.39 0.438 9.92 1.48 1.87 -1.08 -- -- -0.0107 16.9 4.099 275 3.1 2.08
141.44 0.554 9.83 1.31 -- -2.32 -- -0.98 0.151 -- 5 382 0.0167 5.17
120.26 0.514 9.96 1.42 2.64 -- 0.546 -- -0.0844 17.2 -- -- -- --
121.01 0.515 9.95 1.42 2.64 -- -- -- -0.0818 17.2 -- -- -- --
136.39 0.544 9.88 1.5 -- -2.33 -- -- 0.0751 -- 5.419 411 0.0166 4.72
146.46 0.564 9.95 -- 1.89 -1.05 -- -- -0.147 16.8 4.281 277 3.07 2.3
486.07 1.03 9.92 1.33 -- -- -- -- -0.148 -- -- -- -- --
174.47 0.618 9.99 -- 2.62 -- -- -- -0.24 17.2 -- -- -- --
197.24 0.654 9.9 -- -- -2.36 -- -- -0.0483 -- 5.9 398 0.0116 5.08
532.83 1.08 9.96 -- -- -- -- -- -0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.99 wind 5.0 270 < th dose independent rect. 3 2
2 90.11 wind 5.0 90 < th dose independent rect. 3 5
3 90.24 wind 9.0 270 < th dose independent rect. 5 22
4 90.66 wind 9.0 270 < th dose dependent rect. 3 2
6 90.91 precipitation 0.1 270 < th dose independent rect. 3 2
7 90.91 precipitation 0.1 270 < th dose dependent rect. 3 2
9 91.12 wind 7.0 90 < th dose dependent rect. 3 5
13 91.53 wind 9.0 90 < th dose independent rect. 8 19
15 91.89 wind 5.0 10 < th dose independent rect. 4 4
16 91.89 precipitation 0.1 90 < th dose independent rect. 3 5
17 91.89 wind 9.0 10 < th dose independent rect. 8 20
18 91.89 temperature 10.0 270 > th dose dependent rect. 3 2
19 91.89 precipitation 0.1 90 < th dose dependent rect. 3 5
22 92.00 temperature 10.0 270 > th dose independent rect. 3 2
24 92.00 temperature 30.0 270 < th dose independent rect. 3 2
25 92.00 humidity 50.0 270 > th dose independent rect. 3 2
28 92.00 atmosphere 995.0 270 > th dose independent rect. 3 2
29 92.00 atmosphere 1010.0 270 < th dose independent rect. 3 2
31 92.00 radiation 20.0 270 < th dose independent rect. 3 2
34 92.00 temperature 10.0 270 > th dose independent rect. 5 22
35 92.00 radiation 1.0 270 < th dose dependent rect. 3 2
36 92.04 radiation 40.0 270 < th dose dependent rect. 3 2
38 92.05 temperature 10.0 90 > th dose dependent rect. 3 5
41 92.12 wind 9.0 10 < th dose dependent rect. 4 4
44 92.19 radiation 1.0 270 < th dose independent rect. 3 2
50 92.24 precipitation 0.1 90 < th dose independent rect. 8 19
51 92.24 precipitation 0.1 90 < th dose dependent rect. 8 19
63 92.53 temperature 10.0 90 > th dose independent rect. 3 5
65 92.53 temperature 30.0 90 < th dose independent rect. 3 5
66 92.53 humidity 50.0 90 > th dose independent rect. 3 5
68 92.53 atmosphere 995.0 90 > th dose independent rect. 3 5
69 92.53 atmosphere 1015.0 90 < th dose independent rect. 3 5
70 92.53 temperature 10.0 90 > th dose independent rect. 8 19
71 92.55 precipitation 0.1 10 < th dose independent rect. 4 4
72 92.55 precipitation 0.1 10 < th dose dependent rect. 4 4
75 92.74 radiation 40.0 90 < th dose independent rect. 3 5
76 92.75 wind 7.0 270 < th dose independent rect. 6 20
78 92.75 temperature 10.0 10 > th dose dependent rect. 4 4
80 92.79 temperature 10.0 10 > th dose independent rect. 4 4
82 92.79 temperature 30.0 10 < th dose independent rect. 4 4
83 92.79 humidity 50.0 10 > th dose independent rect. 4 4
85 92.79 atmosphere 995.0 10 > th dose independent rect. 4 4
86 92.79 atmosphere 1015.0 10 < th dose independent rect. 4 4
87 92.79 temperature 10.0 10 > th dose independent rect. 8 20
93 93.05 wind 5.0 270 < th dose independent rect. 1 6
98 93.20 humidity 50.0 270 > th dose dependent rect. 3 2
112 93.35 atmosphere 1000.0 90 > th dose dependent rect. 3 5
117 93.41 atmosphere 1000.0 10 > th dose dependent rect. 4 4
119 93.43 precipitation 0.1 270 < th dose independent rect. 5 22
120 93.43 precipitation 0.1 270 < th dose dependent rect. 5 22
134 93.69 radiation 40.0 10 < th dose independent rect. 4 4
144 93.79 atmosphere 995.0 10 > th dose independent rect. 8 20
149 93.85 atmosphere 995.0 90 > th dose independent rect. 8 19
157 94.03 atmosphere 1005.0 10 > th dose independent rect. 4 4
159 94.08 atmosphere 1005.0 270 > th dose independent rect. 3 2
177 94.31 temperature 10.0 270 > th dose dependent rect. 1 6
194 94.35 atmosphere 1000.0 270 > th dose dependent rect. 3 2
226 94.47 temperature 10.0 270 > th dose independent rect. 6 20
245 94.70 radiation 40.0 270 < th dose dependent rect. 2 4
254 94.85 precipitation 0.1 270 < th dose independent rect. 6 20
255 94.85 precipitation 0.1 270 < th dose dependent rect. 6 20
332 95.48 wind 1.0 270 > th dose independent rect. 3 2
380 95.88 humidity 50.0 270 > th dose dependent rect. 2 4
415 96.01 atmosphere 995.0 10 > th dose dependent rect. 8 20
432 96.21 atmosphere 995.0 270 > th dose independent rect. 6 20
459 96.43 wind 9.0 90 < th dose dependent rect. 8 19
483 96.56 atmosphere 995.0 270 > th dose independent rect. 5 22
506 96.66 temperature 15.0 90 > th dose independent rect. 15 17
551 96.88 temperature 30.0 10 < th dose dependent rect. 20 8
566 96.95 atmosphere 1010.0 90 < th dose independent rect. 15 17
567 96.95 humidity 50.0 30 > th dose independent rect. 8 20
592 97.12 atmosphere 1015.0 270 < th dose independent rect. 11 10
593 97.13 wind 7.0 270 < th dose independent rect. 6 8
635 97.27 temperature 10.0 10 > th dose dependent rect. 15 17
636 97.28 temperature 15.0 10 > th dose independent rect. 15 17
656 97.40 temperature 30.0 270 < th dose dependent rect. 21 4
657 97.40 temperature 30.0 10 < th dose dependent rect. 22 6
661 97.42 temperature 30.0 270 < th dose dependent rect. 20 6
665 97.44 atmosphere 1015.0 10 < th dose independent rect. 15 17
675 97.49 temperature 15.0 270 > th dose independent rect. 11 10
705 97.62 radiation 40.0 90 < th dose independent rect. 13 19
708 97.65 radiation 40.0 10 < th dose dependent rect. 4 4
711 97.69 wind 9.0 90 < th dose independent rect. 8 7
721 97.73 precipitation 0.1 90 < th dose independent rect. 8 7
725 97.73 precipitation 0.1 90 < th dose dependent rect. 8 7
736 97.78 atmosphere 1015.0 270 < th dose dependent rect. 3 2
762 97.90 temperature 10.0 90 > th dose independent rect. 8 7
763 97.90 atmosphere 1015.0 90 < th dose independent rect. 8 7
781 97.97 wind 9.0 270 < th dose independent rect. 21 14
784 97.98 atmosphere 995.0 90 > th dose independent rect. 8 7
807 98.07 temperature 10.0 270 > th dose independent rect. 21 14
808 98.07 atmosphere 995.0 270 > th dose independent rect. 21 14
813 98.08 radiation 40.0 270 < th dose independent rect. 13 17
834 98.17 wind 9.0 270 < th dose dependent rect. 6 20
845 98.18 radiation 1.0 270 < th dose dependent rect. 3 14
854 98.23 humidity 50.0 270 > th dose independent rect. 21 14
892 98.36 wind 1.0 90 > th dose independent rect. 8 7
894 98.36 precipitation 0.1 10 < th dose independent rect. 15 17
896 98.36 precipitation 0.1 10 < th dose dependent rect. 15 17
904 98.42 atmosphere 1000.0 270 > th dose independent rect. 19 7
911 98.44 precipitation 0.1 270 < th dose independent rect. 6 8
912 98.44 precipitation 0.1 270 < th dose dependent rect. 6 8
926 98.47 wind 9.0 10 < th dose independent rect. 8 7
942 98.52 temperature 10.0 10 > th dose independent rect. 8 7
944 98.52 atmosphere 995.0 10 > th dose independent rect. 8 7
945 98.52 atmosphere 1015.0 10 < th dose independent rect. 8 7
946 98.52 precipitation 0.1 10 < th dose independent rect. 8 7
949 98.52 precipitation 0.1 10 < th dose dependent rect. 8 7
960 98.59 radiation 1.0 10 > th dose independent rect. 8 7
962 98.59 temperature 10.0 270 > th dose independent rect. 6 8
963 98.59 atmosphere 995.0 270 > th dose independent rect. 6 8
964 98.59 atmosphere 1015.0 270 < th dose independent rect. 6 8
970 98.60 atmosphere 1015.0 10 < th dose dependent rect. 4 4
987 98.68 radiation 40.0 270 < th dose independent rect. 11 20
999 98.69 wind 9.0 1440 < th dose independent rect. 3 6
1000 98.69 temperature 10.0 1440 > th dose independent rect. 3 6