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Os08g0519800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Maternal pumilio protein. Splice isoform E.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0134) R2 : 0.763
β1 : 1.64 (0.0489) R2dD : 0.605 R2D : 0.466
β2 : 0.613 (0.0348) R2dC : 0.162 R2C : 0.109
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.418 (0.0285) R2dN8 : 0.15 R2N8 : 0.00755
σ : 0.251
deviance : 28.74
__
_____
C
peak time of C : 17.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.51 0.237 11.6 1.66 0.58 0.511 -0.0706 -0.135 0.451 17.5 79.86 1334 -- --
25.53 0.235 11.6 1.66 0.58 0.503 -0.0773 -- 0.449 17.5 79.9 1336 -- --
25.52 0.235 11.6 1.67 0.579 0.51 -- -0.145 0.451 17.5 79.86 1334 -- --
25.54 0.235 11.6 1.65 0.579 0.503 -- -- 0.448 17.5 79.9 1335 -- --
42.29 0.303 11.6 1.66 -- 0.667 -- -0.0789 0.44 -- 79 1289 -- --
28.74 0.251 11.6 1.64 0.613 -- -0.0396 -- 0.418 17.3 -- -- -- --
28.74 0.251 11.6 1.64 0.613 -- -- -- 0.418 17.3 -- -- -- --
42.3 0.303 11.6 1.65 -- 0.663 -- -- 0.437 -- 78.77 1293 -- --
89.4 0.44 11.7 -- 0.675 0.805 -- -- 0.361 17.3 88 1688 -- --
48.32 0.325 11.6 1.62 -- -- -- -- 0.403 -- -- -- -- --
99.42 0.466 11.7 -- 0.585 -- -- -- 0.236 17.4 -- -- -- --
106.94 0.482 11.6 -- -- 0.782 -- -- 0.322 -- 88.1 1374 -- --
117.25 0.505 11.7 -- -- -- -- -- 0.224 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.68 wind 7.0 270 < th dose independent rect. 7 9
2 24.69 humidity 90.0 720 < th dose dependent rect. 19 12
3 24.70 wind 9.0 270 < th dose dependent rect. 7 9
4 24.74 humidity 80.0 1440 < th dose dependent rect. 20 10
5 24.75 humidity 80.0 1440 < th dose dependent rect. 20 8
24 24.95 temperature 30.0 90 < th dose dependent rect. 3 8
27 24.98 temperature 30.0 270 < th dose dependent rect. 1 7
35 25.05 humidity 70.0 90 > th dose dependent rect. 22 5
37 25.06 humidity 80.0 720 > th dose independent rect. 20 7
38 25.06 humidity 80.0 1440 > th dose independent rect. 20 20
39 25.07 humidity 70.0 270 > th dose dependent rect. 23 1
45 25.09 humidity 80.0 1440 < th dose independent rect. 20 19
46 25.11 wind 1.0 43200 > th dose independent rect. 3 4
51 25.13 humidity 80.0 720 < th dose independent rect. 19 12
52 25.13 wind 7.0 270 < th dose independent rect. 7 19
54 25.14 wind 1.0 43200 < th dose independent rect. 3 4
57 25.16 humidity 80.0 1440 > th dose independent rect. 20 12
58 25.16 wind 9.0 270 < th dose dependent rect. 7 19
69 25.20 humidity 80.0 270 > th dose independent rect. 21 4
73 25.21 wind 5.0 270 < th dose independent rect. 2 5
76 25.22 humidity 80.0 270 > th dose independent rect. 23 1
84 25.24 wind 1.0 43200 < th dose dependent rect. 4 2
92 25.25 atmosphere 1005.0 10 > th dose dependent rect. 5 3
94 25.25 atmosphere 995.0 270 > th dose dependent rect. 20 6
100 25.26 humidity 80.0 720 < th dose independent rect. 19 10
115 25.28 wind 7.0 270 < th dose independent rect. 6 21
130 25.31 atmosphere 995.0 270 > th dose dependent rect. 21 4
136 25.33 wind 1.0 43200 < th dose independent rect. 4 2
138 25.33 temperature 20.0 270 > th dose independent rect. 21 15
146 25.34 temperature 30.0 270 < th dose dependent rect. 3 2
149 25.34 humidity 70.0 720 > th dose dependent rect. 19 8
150 25.35 humidity 80.0 1440 < th dose independent sin 10 NA
157 25.35 humidity 70.0 1440 > th dose dependent rect. 19 21
162 25.36 radiation 10.0 14400 < th dose dependent rect. 23 5
166 25.37 wind 5.0 270 < th dose independent rect. 3 3
170 25.37 atmosphere 995.0 270 > th dose dependent rect. 23 1
175 25.38 precipitation 0.1 270 < th dose independent rect. 2 5
179 25.38 humidity 80.0 1440 > th dose independent rect. 10 22
181 25.38 precipitation 0.1 270 < th dose dependent rect. 2 5
184 25.39 atmosphere 1000.0 270 > th dose independent rect. 20 6
185 25.39 temperature 25.0 270 < th dose independent rect. 1 7
204 25.42 atmosphere 1000.0 90 > th dose independent rect. 22 5
208 25.42 precipitation 0.1 270 < th dose independent rect. 16 15
211 25.42 humidity 80.0 1440 < th dose independent rect. 10 22
214 25.42 precipitation 0.1 270 < th dose dependent rect. 16 15
216 25.43 humidity 80.0 1440 > th dose independent sin 10 NA
217 25.43 wind 1.0 270 > th dose independent rect. 2 5
225 25.43 humidity 50.0 1440 > th dose dependent rect. 19 12
232 25.44 precipitation 0.1 270 < th dose independent rect. 2 18
234 25.44 precipitation 0.1 270 < th dose dependent rect. 2 18
236 25.45 precipitation 0.1 270 < th dose independent rect. 3 3
241 25.45 precipitation 0.1 270 < th dose dependent rect. 3 3
245 25.46 atmosphere 1005.0 270 > th dose independent rect. 3 3
264 25.47 humidity 70.0 10 > th dose dependent rect. 22 6
269 25.48 atmosphere 1000.0 270 > th dose independent rect. 23 1
277 25.48 atmosphere 1005.0 30 > th dose dependent rect. 3 5
283 25.49 humidity 90.0 270 < th dose independent rect. 5 1
287 25.49 temperature 15.0 270 > th dose independent rect. 16 15
292 25.49 precipitation 0.1 270 < th dose independent rect. 24 23
293 25.49 atmosphere 1000.0 270 > th dose dependent rect. 3 3
299 25.49 precipitation 0.1 270 < th dose dependent rect. 24 23
304 25.50 humidity 80.0 1440 < th dose independent rect. 13 19
317 25.50 humidity 70.0 1440 > th dose dependent rect. 11 20
320 25.51 wind 1.0 14400 > th dose independent rect. 4 1
341 25.52 precipitation 0.1 270 < th dose independent rect. 1 20
343 25.52 wind 1.0 43200 < th dose dependent rect. 3 4
354 25.52 precipitation 0.1 270 < th dose dependent rect. 1 20
358 25.53 atmosphere 995.0 270 > th dose independent rect. 7 19
359 25.53 humidity 50.0 1440 > th dose dependent sin 12 NA
391 25.55 humidity 80.0 10 > th dose independent rect. 23 5
412 25.56 humidity 90.0 270 < th dose independent rect. 3 3
422 25.57 humidity 80.0 10 > th dose independent rect. 22 7
438 25.58 temperature 15.0 270 > th dose independent rect. 7 9
460 25.59 temperature 10.0 270 > th dose independent rect. 2 5
462 25.59 temperature 30.0 270 < th dose independent rect. 2 5
463 25.59 humidity 50.0 270 > th dose independent rect. 2 5
465 25.59 atmosphere 995.0 270 > th dose independent rect. 2 5
466 25.59 atmosphere 1015.0 270 < th dose independent rect. 2 5
467 25.59 radiation 30.0 270 < th dose independent rect. 2 5
474 25.59 temperature 10.0 270 > th dose independent rect. 7 19
489 25.60 wind 1.0 270 > th dose independent rect. 2 18
521 25.61 humidity 90.0 1440 < th dose dependent sin 11 NA
539 25.62 wind 7.0 270 < th dose independent rect. 21 15
557 25.62 temperature 10.0 270 > th dose dependent rect. 21 15
572 25.63 radiation 1.0 30 < th dose independent rect. 22 18
586 25.64 temperature 25.0 90 < th dose independent rect. 3 8
588 25.64 atmosphere 995.0 270 > th dose independent rect. 7 9
655 25.66 atmosphere 995.0 10 > th dose dependent rect. 23 6
662 25.67 atmosphere 1005.0 10 > th dose independent rect. 5 3
682 25.67 radiation 40.0 270 < th dose dependent rect. 2 5
691 25.68 radiation 1.0 30 < th dose independent rect. 22 10
723 25.69 temperature 20.0 270 > th dose independent rect. 6 20
724 25.69 atmosphere 995.0 270 > th dose independent rect. 6 21
743 25.69 radiation 1.0 30 < th dose dependent rect. 22 19
749 25.70 humidity 80.0 1440 > th dose independent no NA NA
750 25.70 humidity 80.0 1440 < th dose independent no NA NA
751 25.70 wind 1.0 270 > th dose independent rect. 3 1
752 25.70 wind 5.0 270 < th dose independent rect. 23 1
753 25.70 temperature 10.0 270 > th dose independent rect. 20 6
754 25.70 temperature 30.0 270 < th dose independent rect. 20 6
755 25.70 humidity 50.0 270 > th dose independent rect. 20 6
759 25.70 radiation 1.0 270 < th dose independent rect. 20 6
767 25.70 temperature 10.0 270 > th dose independent rect. 2 18
768 25.70 atmosphere 1015.0 270 < th dose independent rect. 2 18
770 25.70 atmosphere 1015.0 270 < th dose independent rect. 1 20
785 25.70 radiation 1.0 270 < th dose dependent rect. 20 6
802 25.71 wind 9.0 270 < th dose independent rect. 20 6
840 25.72 temperature 10.0 270 > th dose independent rect. 3 3
842 25.72 temperature 30.0 270 < th dose independent rect. 3 3
843 25.72 humidity 50.0 270 > th dose independent rect. 3 3
846 25.72 atmosphere 995.0 270 > th dose independent rect. 3 3
847 25.72 atmosphere 1015.0 270 < th dose independent rect. 3 3
848 25.72 radiation 20.0 270 < th dose independent rect. 3 3
871 25.72 temperature 10.0 270 > th dose independent rect. 6 21
913 25.74 atmosphere 1000.0 10 > th dose independent rect. 23 5
916 25.74 precipitation 0.1 270 < th dose independent rect. 20 6
923 25.74 atmosphere 1015.0 270 < th dose independent rect. 7 9
925 25.74 radiation 30.0 270 < th dose independent rect. 16 15
934 25.74 humidity 80.0 1440 > th dose independent rect. 5 23
936 25.74 humidity 80.0 1440 < th dose independent rect. 5 23
942 25.74 precipitation 0.1 270 < th dose dependent rect. 20 6
959 25.75 atmosphere 1010.0 270 < th dose independent rect. 12 9
961 25.75 precipitation 0.1 270 < th dose independent rect. 7 9
974 25.75 wind 1.0 270 > th dose independent rect. 1 20
979 25.75 humidity 80.0 1440 < th dose independent rect. 1 23
984 25.75 wind 9.0 270 < th dose dependent rect. 2 5
988 25.75 precipitation 0.1 270 < th dose dependent rect. 7 9