Os09g0497100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pumilio RBD (Fragment).
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Os09g0497100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pumilio RBD (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.77 | 0.567 | 7.52 | 3.27 | 2.1 | 1.49 | 0.149 | -0.361 | 0.336 | 18.7 | 23.5 | 1718 | -- | -- |
| 145.8 | 0.562 | 7.51 | 3.37 | 2.11 | 1.45 | 0.146 | -- | 0.359 | 18.7 | 23.4 | 1701 | -- | -- |
| 145.82 | 0.562 | 7.52 | 3.27 | 2.1 | 1.48 | -- | -0.313 | 0.335 | 18.7 | 23.43 | 1713 | -- | -- |
| 145.85 | 0.562 | 7.51 | 3.36 | 2.11 | 1.46 | -- | -- | 0.36 | 18.7 | 23.4 | 1714 | -- | -- |
| 243.51 | 0.727 | 7.45 | 3.28 | -- | 2.33 | -- | -1.48 | 0.245 | -- | 24 | 549 | -- | -- |
| 216.32 | 0.69 | 7.45 | 3.86 | 2.22 | -- | 0.131 | -- | 0.631 | 18.7 | -- | -- | -- | -- |
| 216.37 | 0.689 | 7.45 | 3.86 | 2.22 | -- | -- | -- | 0.632 | 18.7 | -- | -- | -- | -- |
| 230.05 | 0.706 | 7.49 | 3.21 | -- | 2.94 | -- | -- | 0.226 | -- | 23.75 | 493 | -- | -- |
| 193.78 | 0.648 | 7.77 | -- | 2.22 | 3.24 | -- | -- | -0.788 | 18.6 | 13.04 | 47520 | -- | -- |
| 473.27 | 1.02 | 7.4 | 3.81 | -- | -- | -- | -- | 0.588 | -- | -- | -- | -- | -- |
| 609.09 | 1.15 | 7.55 | -- | 2.17 | -- | -- | -- | 0.202 | 18.8 | -- | -- | -- | -- |
| 451.48 | 0.99 | 7.72 | -- | -- | 3.2 | -- | -- | -0.811 | -- | 12.64 | 47520 | -- | -- |
| 856.1 | 1.37 | 7.5 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 142.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 4 | 143.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 5 | 143.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 17 | 144.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 22 | 145.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 25 | 145.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 55 | 146.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 69 | 146.76 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 85 | 147.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 86 | 147.26 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 95 | 147.51 | temperature | 25 | 1440 | > th | dose dependent | sin | 8 | NA |
| 97 | 147.53 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 113 | 147.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 127 | 148.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 130 | 148.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 138 | 148.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 146 | 148.51 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 147 | 148.51 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 150 | 148.52 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 152 | 148.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 153 | 148.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 160 | 148.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 163 | 148.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 178 | 148.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 192 | 148.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 196 | 148.76 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 240 | 148.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 252 | 148.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 22 |
| 254 | 148.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 275 | 149.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 286 | 149.02 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 308 | 149.08 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 326 | 149.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 336 | 149.12 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 341 | 149.13 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 349 | 149.16 | temperature | 30 | 1440 | < th | dose independent | sin | 1 | NA |
| 354 | 149.17 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 369 | 149.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 385 | 149.29 | temperature | 30 | 1440 | > th | dose independent | sin | 1 | NA |
| 392 | 149.30 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 13 |
| 396 | 149.31 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 409 | 149.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 414 | 149.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 434 | 149.37 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 453 | 149.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 481 | 149.43 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 491 | 149.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 604 | 149.54 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 615 | 149.55 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 622 | 149.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 648 | 149.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 658 | 149.61 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 728 | 149.73 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 840 | 149.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 18 |
| 886 | 149.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 904 | 149.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 929 | 150.05 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 9 |