BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0304000 Os11g0304000|Os11g0304000
(291 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0304000 526 e-150
Os11g0304050 Winged helix repressor DNA-binding domain cont... 125 4e-29
Os11g0303600 Similar to Herbicide safener binding protein 122 2e-28
Os11g0305400 Winged helix repressor DNA-binding domain cont... 109 2e-24
Os11g0306400 Similar to Herbicide safener binding protein 99 3e-21
Os11g0307300 Winged helix repressor DNA-binding domain cont... 97 2e-20
Os11g0235500 Similar to Herbicide safener binding protein 96 4e-20
Os08g0290700 Winged helix repressor DNA-binding domain cont... 82 4e-16
Os11g0306300 Similar to Herbicide safener binding protein 78 8e-15
Os08g0169300 Winged helix repressor DNA-binding domain cont... 73 2e-13
Os07g0464200 Winged helix repressor DNA-binding domain cont... 70 2e-12
Os07g0463600 Winged helix repressor DNA-binding domain cont... 67 2e-11
>Os11g0304000
Length = 291
Score = 526 bits (1356), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/276 (92%), Positives = 254/276 (92%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR
Sbjct: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
Query: 76 QRDENEWRDLFKTAGTAGFSDYKIVKNWELELYLRSIDPKQCSQIXXXXXXXXXXXXKCF 135
QRDENEWRDLFKTAGTAGFSDYKIVKNWELELYLRSIDPKQCSQI KCF
Sbjct: 76 QRDENEWRDLFKTAGTAGFSDYKIVKNWELELYLRSIDPKQCSQILLLSGFPLSLLGKCF 135
Query: 136 AYEGPTWESTGESWGQKSQQGVGRPTTEPNQPPSYTGYSLPKVVMTGSRAITDFRRTDGM 195
AYEGPTWESTGESWGQKSQQGVGRPTTEPNQPPSYTGYSLPKVVMTGSRAITDFRRTDGM
Sbjct: 136 AYEGPTWESTGESWGQKSQQGVGRPTTEPNQPPSYTGYSLPKVVMTGSRAITDFRRTDGM 195
Query: 196 RRRKMFVGCYGGSPPSQVISTYKYPFTSFIPSTHXXXXXXXXXXNSAVRGGFSKHQEDTG 255
RRRKMFVGCYGGSPPSQVISTYKYPFTSFIPSTH NSAVRGGFSKHQEDTG
Sbjct: 196 RRRKMFVGCYGGSPPSQVISTYKYPFTSFIPSTHLKKKIKSSLKNSAVRGGFSKHQEDTG 255
Query: 256 YETWWCVLHARPRFDGMRNQSGTRYATSVVTVWLTV 291
YETWWCVLHARPRFDGMRNQSGTRYATSVVTVWLTV
Sbjct: 256 YETWWCVLHARPRFDGMRNQSGTRYATSVVTVWLTV 291
>Os11g0304050 Winged helix repressor DNA-binding domain containing protein
Length = 369
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 66/87 (75%), Gaps = 3/87 (3%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
HHWN ED VKILA C K IP E KVII DIV GAPSG LLEAQLL++V MMVVTKGR
Sbjct: 275 HHWNDEDCVKILANCKKAIPTREDGGKVIIIDIVIGAPSGLLLEAQLLMDVAMMVVTKGR 334
Query: 76 QRDENEWRDLFKTAGTAGFSDYKIVKN 102
QRDEN+WRDLF AGFSDY IVK
Sbjct: 335 QRDENDWRDLFS---KAGFSDYNIVKK 358
>Os11g0303600 Similar to Herbicide safener binding protein
Length = 374
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 68/87 (78%), Gaps = 3/87 (3%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
HHW+ ED VKIL QC K IP + KVII DIV GAPSGPLLEAQLL++V MMV TKGR
Sbjct: 280 HHWSDEDCVKILTQCKKAIPARKDGGKVIIIDIVIGAPSGPLLEAQLLMDVGMMVATKGR 339
Query: 76 QRDENEWRDLFKTAGTAGFSDYKIVKN 102
QRDEN+WRDLFK AGF++YKIVK
Sbjct: 340 QRDENDWRDLFK---KAGFNNYKIVKK 363
>Os11g0305400 Winged helix repressor DNA-binding domain containing protein
Length = 368
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
HHW+ +D VKILA C K IP+ E KVII D+V + SGPLLEA+LL++V M+++ KG+
Sbjct: 274 HHWSDQDCVKILAHCKKAIPSREAGGKVIIIDVVISSTSGPLLEAELLMDVGMILIGKGQ 333
Query: 76 QRDENEWRDLFKTAGTAGFSDYKIVKNW 103
QRDEN+W DLFK AGFSDYKIVK
Sbjct: 334 QRDENKWCDLFK---KAGFSDYKIVKKL 358
>Os11g0306400 Similar to Herbicide safener binding protein
Length = 368
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 65/87 (74%), Gaps = 4/87 (4%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLL-EAQLLINVVMMVVTKG 74
HHW+ +D VKIL QC K IP+ E KVII +I+ G GP++ EAQL+++++M+V T+G
Sbjct: 273 HHWSDDDCVKILTQCRKAIPSREEGGKVIIIEILVGPSLGPVMFEAQLMMDMLMLVNTRG 332
Query: 75 RQRDENEWRDLFKTAGTAGFSDYKIVK 101
RQRDE +WRDLF AGF+DYKIVK
Sbjct: 333 RQRDERDWRDLFL---KAGFNDYKIVK 356
>Os11g0307300 Winged helix repressor DNA-binding domain containing protein
Length = 370
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 4/89 (4%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLL-EAQLLINVVMMVVTKG 74
HH + +D VKILAQC K IP+ + K+I+ DI+ GP++ EAQL+++++MMV T+G
Sbjct: 275 HHLSDDDCVKILAQCKKAIPSRKEGGKLIVIDILVEPSLGPVMFEAQLMMDMLMMVNTRG 334
Query: 75 RQRDENEWRDLFKTAGTAGFSDYKIVKNW 103
RQR+EN+W DLF TAGFSDYKIVK
Sbjct: 335 RQRNENDWHDLFM---TAGFSDYKIVKKL 360
>Os11g0235500 Similar to Herbicide safener binding protein
Length = 378
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 62/89 (69%), Gaps = 4/89 (4%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGP-LLEAQLLINVVMMVVTKG 74
H W+ +D VKIL+QC K IP+ + KVI+ DI+ GP +LE QLL+++ MMV T+G
Sbjct: 283 HFWSDDDCVKILSQCKKAIPSRKEGGKVIVIDILIEPSLGPAMLETQLLMDMAMMVNTRG 342
Query: 75 RQRDENEWRDLFKTAGTAGFSDYKIVKNW 103
RQRDE+EWRDLF AGFSDYKI K
Sbjct: 343 RQRDESEWRDLFF---RAGFSDYKIAKKL 368
>Os08g0290700 Winged helix repressor DNA-binding domain containing protein
Length = 375
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
H WN ED VKIL QC I + KVII DIV G+PS + EAQ+ +++MMV+T G+
Sbjct: 281 HDWNDEDCVKILKQCRNAIHAQKPGGKVIIIDIVVGSPSKDMFEAQVSFDLLMMVITSGK 340
Query: 76 QRDENEWRDLFKTAGTAGFSDYK 98
+RD++EW +F AGFS YK
Sbjct: 341 ERDQHEWHKIFM---DAGFSHYK 360
>Os11g0306300 Similar to Herbicide safener binding protein
Length = 346
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%)
Query: 17 HWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGRQ 76
HW+ +D VKILAQC K IP+ E KVII D+V G SG +LEA+LL+++ MMV+T GR+
Sbjct: 285 HWSDDDCVKILAQCKKAIPSREAGGKVIIKDVVVGTSSGLMLEAELLMDMAMMVMTSGRE 344
Query: 77 RD 78
RD
Sbjct: 345 RD 346
>Os08g0169300 Winged helix repressor DNA-binding domain containing protein
Length = 315
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEAQLLINVVMMVVTKGR 75
H W+ ED V+IL++C + I N E KVII D V G+ S + EAQL +++ MM VT G+
Sbjct: 215 HDWSDEDCVRILSRCREAISNRE-GGKVIIIDTVIGSQSQQIYEAQLFLDLCMMTVTTGK 273
Query: 76 QRDENEWRDLFKTAGTAGFSDYKIV 100
+R+E EW +F AGF+ YKI+
Sbjct: 274 EREEKEWHMIFL---KAGFTQYKIL 295
>Os07g0464200 Winged helix repressor DNA-binding domain containing protein
Length = 350
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEA-QLLINVVMMVVTKG 74
H W+ ED VKIL +C + IP+ + KVII D+V G+ S + QLL ++ + ++T G
Sbjct: 255 HDWSDEDCVKILKRCKEAIPSKDKGGKVIIIDVVVGSSSQAMCYGTQLLFDLTISMLTPG 314
Query: 75 RQRDENEWRDLFKTAGTAGFSDYKI 99
+RDE EW FK AGF++YKI
Sbjct: 315 MERDEKEW---FKIFNEAGFTEYKI 336
>Os07g0463600 Winged helix repressor DNA-binding domain containing protein
Length = 360
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 16 HHWNVEDYVKILAQCNKTIPNGEYRWKVIITDIVNGAPSGPLLEA-QLLINVVMMVVTKG 74
H W+ ED +KIL +C + IP+ E KVI+ D+V G+ + + QLL ++++ G
Sbjct: 265 HDWSDEDCMKILKRCKEAIPSREAGGKVIVIDVVVGSSTQAMCHGTQLLFDLLISTTLPG 324
Query: 75 RQRDENEWRDLFKTAGTAGFSDYKI 99
QR E EW +FK AGF+DYKI
Sbjct: 325 MQRGEKEWCKVFK---EAGFTDYKI 346
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,827,284
Number of extensions: 378472
Number of successful extensions: 743
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 743
Number of HSP's successfully gapped: 13
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)