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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0304000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0214) R2 : 0.252
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.86 (0.312) R2dE : 0.253 R2E : 0.25
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0415 (0.0452) R2dN8 : 0.00179 R2N8 : -0.0012
σ : 0.402
deviance : 74.66
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.012
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.09
open length of G : 2.06

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.12 0.385 3.12 -0.0903 0.161 3.85 0.0853 -7.47 -0.0375 10.8 0.9631 11 0.94 2.1
72.51 0.397 3.12 -0.0937 0.171 3.97 0.185 -- -0.0447 11.3 1.021 12 0.805 2.22
67.09 0.381 3.12 -0.0868 0.16 3.86 -- -7.48 -0.0382 10.8 0.9441 12 0.986 2.09
72.66 0.397 3.12 -0.0835 0.172 3.95 -- -- -0.0538 11.2 1.023 12 0.795 2.23
68.66 0.386 3.12 -0.0887 -- 3.78 -- -7.6 -0.036 -- 0.9326 12 1.14 1.99
98.58 0.465 3.11 -0.0845 0.133 -- 0.113 -- -0.0129 8.6 -- -- -- --
98.61 0.465 3.11 -0.0813 0.135 -- -- -- -0.0132 8.26 -- -- -- --
74.46 0.402 3.13 -0.0871 -- 3.86 -- -- -0.0512 -- 1.012 12 0.974 2.35
72.84 0.397 3.12 -- 0.173 3.95 -- -- -0.0445 11.2 1.023 12 0.779 2.24
99.62 0.466 3.12 -0.0804 -- -- -- -- -0.0117 -- -- -- -- --
98.79 0.465 3.11 -- 0.134 -- -- -- -0.00419 8.31 -- -- -- --
74.66 0.402 3.12 -- -- 3.86 -- -- -0.0415 -- 1.012 12 1.09 2.06
99.79 0.466 3.12 -- -- -- -- -- -0.00283 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.28 wind 1.0 10 < th dose dependent rect. 1 2
4 68.39 wind 1.0 10 < th dose dependent rect. 11 16
7 68.58 wind 1.0 10 < th dose dependent rect. 14 13
17 70.29 wind 7.0 1440 > th dose independent rect. 2 1
22 70.29 wind 7.0 1440 > th dose dependent rect. 2 1
47 72.68 wind 1.0 10 < th dose dependent rect. 7 20
51 74.01 wind 1.0 10 < th dose independent rect. 1 1
62 75.21 wind 1.0 10 < th dose independent rect. 11 15
65 75.33 wind 1.0 10 < th dose independent rect. 14 12
119 78.97 wind 1.0 10 < th dose dependent sin 17 NA
121 79.62 wind 1.0 10 < th dose independent rect. 6 21
160 82.46 wind 1.0 10 < th dose independent sin 17 NA
191 84.14 wind 1.0 270 < th dose dependent rect. 22 1
214 85.60 wind 1.0 270 < th dose independent rect. 22 1
218 85.86 wind 1.0 10 > th dose independent sin 17 NA
271 87.99 temperature 20.0 90 > th dose dependent rect. 1 1
295 88.60 wind 1.0 270 < th dose dependent rect. 9 17
307 88.95 atmosphere 1005.0 30 > th dose dependent rect. 2 1
313 89.05 humidity 80.0 30 > th dose independent rect. 2 1
315 89.06 wind 9.0 30 < th dose independent rect. 2 1
316 89.06 temperature 10.0 30 > th dose independent rect. 2 1
318 89.06 temperature 30.0 30 < th dose independent rect. 2 1
319 89.06 humidity 50.0 30 > th dose independent rect. 2 1
322 89.06 atmosphere 995.0 30 > th dose independent rect. 2 1
323 89.06 atmosphere 1010.0 30 < th dose independent rect. 2 1
325 89.06 radiation 1.0 30 < th dose independent rect. 2 1
330 89.06 precipitation 0.1 30 < th dose independent rect. 2 1
331 89.06 temperature 10.0 30 > th dose independent rect. 3 23
332 89.06 humidity 50.0 30 > th dose dependent rect. 2 1
335 89.06 radiation 1.0 30 < th dose dependent rect. 2 1
340 89.06 precipitation 0.1 30 < th dose dependent rect. 2 1
364 89.19 atmosphere 1005.0 30 > th dose independent rect. 2 1
365 89.19 atmosphere 1015.0 30 < th dose dependent rect. 2 1
372 89.34 temperature 30.0 30 < th dose dependent rect. 2 1
391 89.59 wind 1.0 30 > th dose independent rect. 2 1
404 89.86 wind 1.0 10 < th dose dependent rect. 1 11
495 90.35 wind 9.0 30 < th dose independent rect. 3 23
550 90.89 humidity 70.0 10 < th dose independent rect. 7 1
610 90.89 humidity 70.0 10 < th dose dependent rect. 7 1
728 91.27 humidity 90.0 10 > th dose independent rect. 24 3
766 91.53 radiation 30.0 30 > th dose independent rect. 7 1
847 91.65 radiation 20.0 10 > th dose dependent rect. 7 1