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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0290700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.17 (0.0719) R2 : 0.507
β1 : -1.29 (0.493) R2dD : 0.0506 R2D : -0.0962
β2 : 1.36 (0.134) R2dC : 0.119 R2C : 0.161
β3 : 3.29 (0.294) R2dE : 0.357 R2E : 0.24
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.9 (2.09) R2dD*E : 0.138 R2D*E : -0.102
γ1 : 0.671 (0.156) R2dN8 : 0.0461 R2N8 : 0.0909
σ : 1.02
deviance : 476.73
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_____
C
peak time of C : 10.3
E
wheather : temperature
threshold : 25
memory length : 4697
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.35
open length of G : 0.883

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
481.39 1.03 4.17 -1.37 1.35 3.31 0.785 -8.86 0.645 10.4 25.1 4730 6.37 1.4
510.79 1.05 4.07 0.539 1.46 2.76 0.49 -- 0.96 10.7 25 4900 6.47 0.871
476.73 1.02 4.17 -1.29 1.36 3.29 -- -8.9 0.671 10.3 25 4697 6.35 0.883
501.26 1.04 3.99 0.585 1.44 2.39 -- -- 1.01 10.2 25.06 4791 6.5 0.883
577.02 1.12 4.29 -1.44 -- 3.85 -- -10 0.328 -- 25.06 4819 6.5 0.511
665.67 1.21 3.92 1.05 1.64 -- 0.392 -- 1.29 10.2 -- -- -- --
666.28 1.21 3.92 1.06 1.64 -- -- -- 1.29 10.2 -- -- -- --
626.68 1.17 4.01 0.558 -- 2.62 -- -- 0.996 -- 25 4805 6.52 0.883
506.9 1.05 3.99 -- 1.45 2.37 -- -- 0.992 10.3 25 4789 6.43 0.949
828.44 1.34 3.97 1.04 -- -- -- -- 1.28 -- -- -- -- --
696.16 1.23 3.95 -- 1.63 -- -- -- 1.17 10.1 -- -- -- --
633.52 1.17 4.04 -- -- 2.73 -- -- 0.957 -- 25.1 4799 6.52 0.897
857.06 1.37 3.99 -- -- -- -- -- 1.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 495.46 temperature 30 14400 < th dose independent rect. 15 2
2 495.67 temperature 30 14400 > th dose independent rect. 15 1
7 498.60 temperature 30 14400 < th dose independent rect. 15 5
8 498.60 temperature 30 14400 < th dose independent rect. 15 16
10 498.62 temperature 30 14400 < th dose independent rect. 15 9
12 498.63 temperature 30 14400 < th dose independent rect. 15 14
37 498.81 temperature 30 14400 > th dose independent rect. 14 5
77 501.93 temperature 30 14400 < th dose independent sin 14 NA
86 502.11 temperature 30 14400 > th dose independent sin 14 NA
208 506.11 temperature 25 14400 > th dose dependent rect. 18 1
211 506.28 temperature 20 270 > th dose dependent sin 6 NA
218 507.22 temperature 20 720 > th dose dependent rect. 20 15
222 507.39 temperature 20 90 > th dose dependent sin 4 NA
293 508.06 temperature 30 14400 > th dose dependent rect. 14 1
302 508.57 temperature 20 270 > th dose dependent rect. 2 9
303 508.59 temperature 20 720 > th dose dependent sin 8 NA
308 508.81 temperature 30 14400 < th dose independent rect. 18 23
327 508.96 temperature 30 14400 < th dose independent rect. 2 15
331 508.97 temperature 30 14400 < th dose independent rect. 23 18
332 508.98 temperature 30 14400 < th dose independent rect. 6 11
343 509.10 temperature 30 14400 > th dose independent rect. 18 23
345 509.13 temperature 30 14400 < th dose independent rect. 2 18
364 509.14 temperature 30 14400 < th dose independent rect. 3 21
365 509.14 temperature 30 14400 < th dose independent rect. 23 21
372 509.15 temperature 30 14400 < th dose independent rect. 6 14
376 509.15 temperature 30 14400 < th dose independent rect. 6 18
406 509.16 temperature 30 14400 < th dose independent rect. 6 23
408 509.17 temperature 30 14400 < th dose independent no NA NA
489 509.40 temperature 30 14400 > th dose independent no NA NA
717 512.84 temperature 25 14400 > th dose dependent sin 14 NA
760 513.51 temperature 20 720 > th dose dependent rect. 23 10
839 514.77 temperature 25 14400 < th dose independent rect. 19 1
844 514.86 temperature 25 14400 > th dose dependent rect. 8 15
984 515.46 temperature 25 14400 > th dose dependent no NA NA