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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0307300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0289) R2 : 0.000218
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0192 (0.0609) R2dN8 : 0.000281 R2N8 : 0.000218
σ : 0.545
deviance : 136.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
123.31 0.522 2.87 0.152 0.159 0.489 0.602 0.682 0.127 5.6 21.6 867 -- --
124.62 0.52 2.84 0.343 0.172 0.468 0.68 -- 0.179 5.74 21.5 869 -- --
123.98 0.519 2.88 0.108 0.158 0.459 -- 0.794 0.106 6.3 21.5 798 -- --
125.69 0.522 2.85 0.342 0.174 0.429 -- -- 0.155 6.83 21.57 869 -- --
125.17 0.521 2.88 0.125 -- 0.506 -- 0.826 0.122 -- 21.53 742 -- --
131.67 0.538 2.88 0.154 0.229 -- 0.621 -- 0.0354 7.07 -- -- -- --
132.51 0.539 2.88 0.168 0.234 -- -- -- 0.0351 7.93 -- -- -- --
127.21 0.525 2.85 0.346 -- 0.467 -- -- 0.174 -- 21.51 805 -- --
128.35 0.528 2.86 -- 0.184 0.352 -- -- 0.104 7.1 21.6 813 -- --
135.49 0.544 2.88 0.171 -- -- -- -- 0.0381 -- -- -- -- --
133.26 0.54 2.88 -- 0.235 -- -- -- 0.0163 7.88 -- -- -- --
130.06 0.531 2.87 -- -- 0.383 -- -- 0.113 -- 21.6 755 -- --
136.26 0.545 2.89 -- -- -- -- -- 0.0192 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 109.59 wind 5 10 > th dose independent rect. 3 6
6 109.66 wind 5 10 > th dose independent rect. 7 2
8 109.75 wind 5 10 > th dose dependent rect. 4 5
9 109.75 wind 5 10 > th dose dependent rect. 2 7
11 109.78 temperature 20 90 < th dose independent rect. 6 1
14 109.81 wind 5 10 > th dose dependent rect. 7 2
24 110.20 humidity 80 90 < th dose independent rect. 6 1
31 110.74 humidity 80 90 < th dose dependent rect. 6 1
32 110.83 temperature 25 10 < th dose dependent rect. 6 2
34 111.77 atmosphere 1005 10 > th dose dependent rect. 6 2
37 112.03 temperature 25 10 < th dose dependent rect. 8 1
55 112.34 temperature 20 270 < th dose dependent rect. 4 4
62 113.00 wind 3 90 > th dose dependent rect. 5 3
64 113.04 temperature 20 270 < th dose dependent rect. 4 15
66 113.06 temperature 20 270 < th dose dependent rect. 4 8
90 113.88 temperature 20 270 < th dose independent rect. 4 4
108 114.79 wind 9 10 > th dose independent rect. 13 1
122 114.79 wind 9 10 > th dose dependent rect. 13 1
154 115.30 temperature 20 90 < th dose independent rect. 6 8
171 115.48 temperature 20 90 < th dose independent rect. 6 6
204 115.92 temperature 20 270 < th dose dependent sin 0 NA
275 117.67 humidity 80 90 < th dose dependent rect. 5 3
278 117.73 atmosphere 1005 30 > th dose independent rect. 6 2
296 117.85 radiation 20 10 < th dose independent rect. 6 2
300 117.89 wind 1 720 < th dose dependent rect. 19 2
311 117.98 radiation 10 10 > th dose independent rect. 6 1
337 117.98 radiation 10 10 > th dose dependent rect. 6 1
383 118.39 temperature 20 10 < th dose independent rect. 6 9
412 118.75 wind 1 720 < th dose independent rect. 19 2
461 119.00 temperature 20 10 < th dose independent rect. 6 2
472 119.07 temperature 20 10 < th dose independent rect. 6 6
482 119.13 radiation 30 10 > th dose independent rect. 13 1
497 119.33 temperature 20 270 < th dose independent sin 1 NA
499 119.36 temperature 20 10 < th dose independent rect. 8 7
516 119.48 humidity 90 270 < th dose independent rect. 4 1
526 119.53 temperature 20 270 > th dose independent sin 1 NA
549 119.76 wind 1 720 < th dose dependent rect. 14 7
584 120.05 wind 1 1440 < th dose dependent rect. 16 1
618 120.19 temperature 20 10 < th dose independent rect. 8 2
689 120.47 wind 1 720 < th dose independent rect. 16 5
690 120.49 wind 1 270 < th dose independent rect. 17 3
695 120.53 wind 1 1440 < th dose independent rect. 16 2
698 120.56 radiation 20 10 > th dose dependent rect. 13 1
738 120.77 wind 9 4320 > th dose independent rect. 3 1
771 120.77 wind 9 4320 > th dose dependent rect. 3 1
825 120.87 wind 1 720 < th dose independent rect. 14 7
898 121.33 temperature 30 720 < th dose dependent rect. 20 3
939 121.39 temperature 30 270 < th dose dependent rect. 19 13
940 121.41 radiation 30 10 < th dose dependent rect. 6 2
950 121.47 humidity 90 10 < th dose independent rect. 6 2
964 121.55 temperature 20 270 > th dose independent rect. 24 13
969 121.57 temperature 30 720 < th dose dependent rect. 20 1
971 121.58 temperature 20 270 > th dose independent rect. 24 11