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Os07g0464200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0306) R2 : 0.932
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.05 (0.122) R2dC : 0.38 R2C : 0.761
β3 : 3.04 (0.137) R2dE : 0.17 R2E : 0.547
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.223 (0.0647) R2dN8 : 0.00232 R2N8 : 0.000427
σ : 0.575
deviance : 152.46
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C
peak time of C : 5.52
E
wheather : precipitation
threshold : 0.4999
memory length : 265
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.8
open length of G : 19.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.57 0.571 13.1 0.186 3.89 3.13 2.08 -1.16 0.253 5.68 0.2135 275 16.8 19
148.92 0.568 13.1 0.179 3.85 3.18 1.31 -- 0.281 5.66 0.002264 276 16.8 19
151.09 0.572 13.1 0.158 3.98 3.11 -- 0.541 0.25 5.52 0.4497 269 16.9 19.2
151.76 0.574 13.1 0.166 4.03 3.07 -- -- 0.242 5.52 0.3516 265 16.9 19.3
206.1 0.669 13.2 0.198 -- 6.52 -- 0.745 0.229 -- 1.499 461 17.6 15.7
315.94 0.833 13.1 0.0175 6.08 -- 0.958 -- 0.103 5.48 -- -- -- --
318.18 0.835 13.1 0.0201 6.09 -- -- -- 0.0988 5.47 -- -- -- --
207.61 0.671 13.2 0.146 -- 6.55 -- -- 0.191 -- 1.495 469 17.6 15.6
152.46 0.575 13.1 -- 4.05 3.04 -- -- 0.223 5.52 0.4999 265 16.8 19.3
2247.94 2.22 13.2 0.223 -- -- -- -- 0.248 -- -- -- -- --
318.19 0.834 13.1 -- 6.09 -- -- -- 0.0965 5.47 -- -- -- --
206.24 0.669 13.2 -- -- 6.55 -- -- 0.169 -- 0.93 472 17.6 15.6
2249.25 2.21 13.2 -- -- -- -- -- 0.223 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.87 precipitation 0.1 270 < th dose independent rect. 17 19
2 148.87 precipitation 0.1 270 < th dose dependent rect. 17 19
3 150.98 temperature 20.0 270 > th dose independent rect. 12 5
4 152.69 atmosphere 1010.0 270 < th dose independent rect. 12 5
5 152.98 temperature 10.0 270 > th dose independent rect. 12 5
8 152.98 temperature 10.0 270 > th dose independent rect. 17 19
9 153.13 wind 9.0 270 < th dose independent rect. 12 5
10 153.25 wind 9.0 270 < th dose independent rect. 17 19
11 153.40 precipitation 0.1 270 < th dose independent rect. 16 21
12 153.40 precipitation 0.1 270 < th dose dependent rect. 16 21
13 153.81 precipitation 0.1 270 < th dose independent rect. 12 5
14 153.81 precipitation 0.1 270 < th dose dependent rect. 12 5
15 154.78 wind 1.0 270 > th dose independent rect. 12 5
18 155.28 atmosphere 995.0 270 > th dose independent rect. 12 5
21 156.91 atmosphere 995.0 270 > th dose independent rect. 17 19
22 158.60 precipitation 0.1 270 < th dose independent rect. 13 3
23 158.60 precipitation 0.1 270 < th dose dependent rect. 13 3
24 158.66 temperature 10.0 270 > th dose independent rect. 13 3
26 158.66 atmosphere 1010.0 270 < th dose independent rect. 13 3
28 158.66 temperature 10.0 270 > th dose independent rect. 16 21
30 158.91 wind 9.0 270 < th dose independent rect. 13 3
34 159.50 humidity 50.0 270 > th dose independent rect. 17 19
50 160.41 atmosphere 995.0 270 > th dose independent rect. 13 3
51 160.47 wind 1.0 270 > th dose independent rect. 13 3
56 160.94 humidity 90.0 270 < th dose independent rect. 12 5
58 161.35 wind 1.0 270 > th dose independent rect. 17 19
68 165.74 radiation 1.0 270 > th dose independent rect. 12 5
74 166.97 wind 1.0 270 > th dose independent rect. 6 6
75 166.98 humidity 50.0 270 > th dose independent rect. 13 3
100 168.80 humidity 50.0 270 > th dose independent rect. 12 5
107 169.98 precipitation 0.1 270 < th dose independent rect. 7 15
108 169.98 precipitation 0.1 270 < th dose dependent rect. 7 15
121 170.31 temperature 10.0 270 > th dose independent rect. 7 5
122 170.31 atmosphere 995.0 270 > th dose independent rect. 7 5
123 170.31 atmosphere 1015.0 270 < th dose independent rect. 7 5
124 170.31 temperature 10.0 270 > th dose independent rect. 12 19
125 170.35 precipitation 0.1 270 < th dose independent rect. 7 5
126 170.35 precipitation 0.1 270 < th dose dependent rect. 7 5
127 170.40 wind 9.0 270 < th dose independent rect. 7 5
134 170.44 wind 9.0 270 < th dose independent rect. 12 19
148 171.35 radiation 1.0 270 > th dose independent rect. 13 3
165 171.94 radiation 1.0 270 > th dose independent rect. 8 3
166 171.94 precipitation 0.1 270 < th dose independent rect. 8 3
168 171.94 precipitation 0.1 270 < th dose dependent rect. 8 3
173 172.06 humidity 50.0 270 > th dose independent rect. 7 5
178 172.15 radiation 1.0 270 > th dose independent rect. 7 5
181 172.33 humidity 50.0 270 > th dose independent rect. 8 3
187 172.69 temperature 10.0 270 > th dose dependent rect. 12 4
205 173.60 temperature 10.0 270 > th dose independent rect. 22 9
206 173.60 temperature 30.0 270 < th dose independent rect. 22 9
207 173.60 humidity 50.0 270 > th dose independent rect. 22 9
209 173.60 atmosphere 995.0 270 > th dose independent rect. 22 9
210 173.60 radiation 40.0 270 < th dose independent rect. 22 9
211 173.60 temperature 10.0 270 > th dose independent rect. 7 15
213 173.65 wind 9.0 270 < th dose independent rect. 22 9
224 174.16 atmosphere 995.0 270 > th dose independent rect. 12 19
244 175.92 precipitation 0.1 270 < th dose independent rect. 22 9
245 175.92 precipitation 0.1 270 < th dose dependent rect. 22 9
250 176.06 radiation 1.0 270 > th dose independent rect. 18 18
251 176.10 humidity 50.0 270 > th dose dependent rect. 22 9
258 176.87 wind 9.0 270 < th dose independent rect. 7 15
260 176.88 precipitation 0.1 270 < th dose independent rect. 12 19
261 176.88 precipitation 0.1 270 < th dose dependent rect. 12 19
271 178.14 precipitation 0.1 270 < th dose independent rect. 16 9
279 178.14 precipitation 0.1 270 < th dose dependent rect. 16 9
296 178.66 temperature 10.0 270 > th dose independent rect. 16 9
297 178.66 radiation 40.0 270 < th dose independent rect. 16 9
298 178.66 temperature 10.0 270 > th dose independent rect. 1 15
299 178.66 atmosphere 1015.0 270 < th dose independent rect. 1 15
302 178.95 atmosphere 1015.0 270 < th dose independent rect. 22 9
303 178.96 radiation 1.0 270 > th dose independent rect. 17 20
317 179.82 wind 9.0 270 < th dose independent rect. 1 15
320 179.90 wind 9.0 270 < th dose independent rect. 16 9
321 179.91 atmosphere 995.0 270 > th dose dependent rect. 12 5
334 180.25 temperature 10.0 270 > th dose dependent rect. 8 3
341 180.64 atmosphere 1015.0 270 < th dose independent rect. 12 19
344 180.70 radiation 40.0 90 < th dose independent rect. 13 5
350 181.16 temperature 10.0 270 > th dose dependent rect. 6 6
354 181.28 precipitation 0.1 270 < th dose independent rect. 1 15
356 181.28 precipitation 0.1 270 < th dose dependent rect. 1 15
359 181.38 radiation 40.0 270 < th dose dependent rect. 16 9
360 181.41 atmosphere 995.0 270 > th dose independent rect. 1 15
362 181.53 wind 1.0 270 > th dose independent rect. 16 9
364 181.62 radiation 40.0 270 < th dose dependent rect. 22 9
374 181.80 radiation 40.0 10 < th dose independent rect. 13 6
377 181.96 radiation 1.0 10 > th dose independent rect. 8 6
403 182.75 radiation 1.0 270 > th dose independent rect. 11 19
410 182.96 wind 9.0 10 < th dose independent rect. 19 19
417 183.20 temperature 10.0 10 > th dose independent rect. 14 5
419 183.20 atmosphere 1010.0 10 < th dose independent rect. 14 5
421 183.20 temperature 10.0 10 > th dose independent rect. 19 19
422 183.20 atmosphere 995.0 10 > th dose independent rect. 19 19
428 183.29 wind 1.0 90 > th dose dependent rect. 13 6
431 183.44 wind 1.0 10 > th dose independent rect. 14 5
451 183.76 wind 9.0 10 < th dose independent rect. 14 5
456 184.01 precipitation 0.1 10 < th dose independent rect. 14 5
457 184.01 precipitation 0.1 10 < th dose dependent rect. 14 5
524 185.45 temperature 10.0 10 > th dose independent rect. 8 6
526 185.45 atmosphere 995.0 10 > th dose independent rect. 8 6
527 185.45 atmosphere 1015.0 10 < th dose independent rect. 8 6
528 185.45 precipitation 0.1 10 < th dose independent rect. 8 6
529 185.45 temperature 10.0 10 > th dose independent rect. 14 18
530 185.45 precipitation 0.1 10 < th dose dependent rect. 8 6
539 185.66 wind 1.0 270 > th dose independent rect. 7 15
592 186.29 wind 9.0 10 < th dose independent rect. 8 6
609 186.49 radiation 40.0 10 < th dose independent rect. 14 18
647 187.02 wind 9.0 10 < th dose independent rect. 14 18
650 187.09 radiation 40.0 270 < th dose independent rect. 17 19
659 187.47 atmosphere 995.0 10 > th dose independent rect. 14 5
668 187.66 humidity 50.0 270 > th dose independent rect. 17 8
676 187.96 temperature 30.0 270 < th dose independent rect. 17 18
679 188.00 radiation 40.0 270 < th dose independent rect. 7 4
681 188.06 atmosphere 1015.0 270 < th dose independent rect. 7 14
701 188.62 temperature 30.0 270 < th dose independent rect. 7 4
728 188.92 wind 1.0 10 > th dose independent rect. 8 6
731 189.06 atmosphere 995.0 270 > th dose independent rect. 17 8
747 189.26 atmosphere 1015.0 270 < th dose independent rect. 17 19
816 190.41 humidity 50.0 10 > th dose independent rect. 19 18
857 190.93 temperature 10.0 1440 > th dose independent rect. 9 6
860 190.93 temperature 10.0 1440 > th dose independent rect. 15 18
880 191.10 humidity 50.0 270 > th dose independent rect. 12 19
894 191.49 wind 9.0 270 < th dose dependent rect. 12 5
897 191.60 humidity 90.0 90 < th dose independent rect. 9 4
944 192.49 radiation 1.0 90 < th dose dependent sin 15 NA
948 192.59 atmosphere 995.0 10 > th dose independent rect. 14 18
963 192.96 atmosphere 1015.0 10 < th dose independent rect. 14 18
964 192.96 temperature 10.0 10 > th dose dependent rect. 8 6
981 193.36 atmosphere 1015.0 270 < th dose dependent rect. 13 3
992 193.49 temperature 10.0 10 > th dose dependent rect. 14 5
996 193.54 wind 9.0 270 < th dose dependent rect. 8 3