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Os11g0305400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.33 (0.0416) R2 : 0.356
β1 : -1.82 (0.153) R2dD : 0.219 R2D : 0.156
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.236 (0.182) R2dE : 0.00406 R2E : 0.0209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.28 (0.913) R2dD*E : 0.159 R2D*E : 0.0737
γ1 : 0.341 (0.0941) R2dN8 : 0.0279 R2N8 : 0.038
σ : 0.763
deviance : 268.43
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C
peak time of C : --
E
wheather : radiation
threshold : 21.14
memory length : 4364
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.2
open length of G : 16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
263.01 0.762 6.34 -1.81 0.322 -0.236 -0.1 -8.19 0.344 17.3 21.14 4364 16.2 16
306.47 0.815 6.36 -1.26 0.256 -0.548 -0.222 -- 0.3 16.7 20 2882 17.2 15.9
263.04 0.755 6.34 -1.81 0.322 -0.235 -- -8.18 0.344 17.3 21.13 4365 16.2 16
305.89 0.815 6.31 -1.35 0.426 -0.64 -- -- 0.364 16.7 20 2899 17.9 15.8
268.43 0.763 6.33 -1.82 -- -0.236 -- -8.28 0.341 -- 21.14 4364 16.2 16
332.65 0.855 6.35 -1.48 0.39 -- 0.129 -- 0.302 16.8 -- -- -- --
332.7 0.854 6.35 -1.48 0.391 -- -- -- 0.303 16.8 -- -- -- --
311.15 0.822 6.31 -1.33 -- -0.659 -- -- 0.356 -- 20.2 2943 17.5 16.1
349.61 0.871 6.31 -- 0.452 -0.715 -- -- 0.37 16.5 20.01 2895 18.3 15.8
340.79 0.863 6.35 -1.5 -- -- -- -- 0.293 -- -- -- -- --
390.52 0.924 6.31 -- 0.418 -- -- -- 0.468 16.6 -- -- -- --
340.82 0.86 6.25 -- -- -1.3 -- -- 0.693 -- 10.01 15864 18.3 17.3
399.82 0.933 6.31 -- -- -- -- -- 0.459 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.59 humidity 80.0 1440 > th dose dependent rect. 6 1
5 271.63 radiation 20.0 4320 > th dose independent rect. 16 16
6 272.24 humidity 90.0 1440 < th dose dependent rect. 6 1
7 272.59 radiation 20.0 4320 > th dose independent rect. 6 2
21 272.72 radiation 20.0 4320 > th dose dependent rect. 16 17
22 272.92 radiation 20.0 4320 > th dose dependent rect. 6 3
38 273.53 radiation 40.0 4320 > th dose dependent rect. 7 3
55 273.71 radiation 40.0 4320 < th dose independent rect. 24 10
58 273.75 radiation 40.0 4320 < th dose independent rect. 20 14
65 273.82 radiation 40.0 4320 < th dose independent rect. 4 6
67 273.87 radiation 40.0 4320 < th dose independent rect. 7 3
72 274.39 humidity 70.0 1440 > th dose dependent rect. 4 5
73 274.41 humidity 70.0 1440 > th dose dependent rect. 5 3
111 275.27 radiation 40.0 4320 > th dose independent rect. 7 3
180 275.86 radiation 1.0 1440 < th dose independent rect. 23 8
181 275.86 wind 7.0 43200 > th dose dependent rect. 10 2
185 275.90 humidity 90.0 1440 < th dose dependent rect. 4 4
195 276.06 radiation 40.0 4320 < th dose independent rect. 8 1
225 276.47 radiation 1.0 1440 > th dose independent rect. 4 3
241 276.67 wind 9.0 43200 > th dose independent rect. 10 3
248 276.88 radiation 1.0 4320 > th dose dependent rect. 7 1
249 276.89 wind 9.0 14400 < th dose independent rect. 7 3
254 277.01 radiation 40.0 4320 < th dose dependent rect. 7 1
259 277.45 wind 9.0 43200 < th dose independent rect. 10 2
261 277.53 wind 9.0 43200 < th dose independent rect. 9 4
343 278.55 wind 9.0 14400 < th dose independent rect. 5 6
356 279.10 wind 7.0 43200 > th dose dependent rect. 4 9
363 279.29 radiation 40.0 1440 < th dose dependent rect. 23 7
382 279.38 precipitation 0.1 43200 < th dose independent rect. 5 4
383 279.38 precipitation 0.1 43200 < th dose dependent rect. 5 4
448 279.65 wind 5.0 43200 < th dose dependent rect. 1 3
464 279.81 atmosphere 1005.0 43200 < th dose independent rect. 16 12
475 279.98 precipitation 0.1 43200 > th dose dependent rect. 5 4
479 280.00 atmosphere 1005.0 43200 < th dose independent rect. 16 8
512 280.19 precipitation 0.1 43200 > th dose independent rect. 5 4
542 280.32 radiation 40.0 4320 < th dose independent sin 11 NA
545 280.34 precipitation 0.1 43200 < th dose independent rect. 7 1
548 280.34 precipitation 0.1 43200 < th dose dependent rect. 7 1
560 280.46 wind 9.0 43200 < th dose independent rect. 3 10
567 280.50 atmosphere 1005.0 43200 < th dose independent rect. 18 3
580 280.57 precipitation 0.1 43200 < th dose independent rect. 5 1
583 280.57 precipitation 0.1 43200 < th dose dependent rect. 5 1
587 280.60 atmosphere 1005.0 43200 > th dose independent rect. 15 14
601 280.65 atmosphere 1005.0 43200 > th dose independent rect. 16 12
608 280.67 precipitation 0.1 43200 > th dose dependent rect. 5 1
617 280.75 atmosphere 1005.0 43200 > th dose independent rect. 18 3
624 280.81 humidity 90.0 1440 < th dose independent rect. 5 3
625 280.81 wind 1.0 43200 > th dose dependent rect. 24 4
632 280.85 precipitation 0.1 43200 > th dose independent rect. 5 1
649 280.89 radiation 40.0 4320 < th dose dependent rect. 17 16
651 280.91 atmosphere 1005.0 43200 > th dose independent rect. 19 1
660 280.96 atmosphere 1005.0 43200 < th dose independent sin 16 NA
704 281.14 humidity 90.0 14400 > th dose dependent rect. 6 1
713 281.20 precipitation 0.1 43200 > th dose dependent rect. 3 11
717 281.23 wind 7.0 43200 > th dose independent rect. 4 9
719 281.24 radiation 40.0 4320 > th dose dependent sin 12 NA
741 281.31 wind 7.0 43200 > th dose independent rect. 2 11
744 281.33 atmosphere 1005.0 43200 > th dose independent rect. 16 8
761 281.41 radiation 40.0 1440 < th dose dependent rect. 19 11
764 281.42 radiation 40.0 4320 < th dose dependent rect. 24 9
771 281.44 radiation 40.0 4320 < th dose dependent rect. 20 13
772 281.45 wind 7.0 43200 > th dose independent rect. 6 7
780 281.46 radiation 40.0 4320 < th dose dependent rect. 2 7
792 281.50 precipitation 0.1 43200 > th dose independent rect. 7 1
815 281.60 precipitation 0.1 43200 > th dose dependent rect. 7 1
840 281.71 atmosphere 1005.0 43200 > th dose independent sin 15 NA
861 281.82 wind 3.0 43200 > th dose dependent rect. 5 1
896 282.01 wind 7.0 43200 > th dose independent rect. 23 14
913 282.04 precipitation 0.1 43200 > th dose independent rect. 3 11
931 282.08 precipitation 0.1 43200 < th dose independent rect. 3 11
933 282.08 precipitation 0.1 43200 < th dose dependent rect. 3 11
963 282.24 radiation 1.0 1440 < th dose dependent rect. 23 8
978 282.33 radiation 1.0 4320 < th dose independent sin 7 NA
999 282.44 wind 9.0 1440 < th dose independent rect. 3 7