Os08g0169300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Winged helix repressor DNA-binding domain containing protein.
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Os08g0169300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Winged helix repressor DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.86 | 0.372 | 3.11 | -0.0277 | 0.188 | 1.73 | -0.119 | 0.175 | 0.102 | 6.91 | 24.8 | 114 | 23.1 | -- |
| 62.85 | 0.369 | 3.11 | -0.0395 | 0.185 | 1.74 | -0.106 | -- | 0.0928 | 6.81 | 24.73 | 121 | 23.1 | -- |
| 62.87 | 0.369 | 3.11 | -0.0312 | 0.19 | 1.74 | -- | 0.175 | 0.0989 | 6.87 | 24.76 | 121 | 23.1 | -- |
| 62.8 | 0.369 | 3.11 | -0.0459 | 0.194 | 1.73 | -- | -- | 0.0937 | 6.96 | 24.67 | 136 | 23.3 | -- |
| 63.94 | 0.372 | 3.12 | -0.0368 | -- | 1.74 | -- | -0.137 | 0.0694 | -- | 23.94 | 110 | 23.2 | -- |
| 103.81 | 0.478 | 3.07 | 0.136 | 0.61 | -- | 0.318 | -- | 0.243 | 11.2 | -- | -- | -- | -- |
| 104.24 | 0.478 | 3.07 | 0.149 | 0.609 | -- | -- | -- | 0.244 | 11.2 | -- | -- | -- | -- |
| 63.83 | 0.372 | 3.13 | -0.0605 | -- | 1.71 | -- | -- | 0.0459 | -- | 23.83 | 110 | 23 | -- |
| 62.84 | 0.369 | 3.11 | -- | 0.191 | 1.74 | -- | -- | 0.0954 | 7.07 | 24.71 | 136 | 23.4 | -- |
| 127.41 | 0.527 | 3.08 | 0.134 | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
| 104.83 | 0.479 | 3.07 | -- | 0.608 | -- | -- | -- | 0.227 | 11.2 | -- | -- | -- | -- |
| 63.92 | 0.372 | 3.13 | -- | -- | 1.7 | -- | -- | 0.0538 | -- | 23.85 | 110 | 23 | -- |
| 127.89 | 0.528 | 3.09 | -- | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.40 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 2 | 63.46 | temperature | 25 | 10 | > th | dose dependent | sin | 3 | NA |
| 13 | 65.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 22 | 66.57 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 103 | 68.18 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 177 | 70.31 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 260 | 72.83 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 8 |
| 321 | 73.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 327 | 73.99 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 424 | 75.25 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 462 | 75.70 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 592 | 77.05 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 12 |
| 851 | 78.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 880 | 79.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 908 | 79.39 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 980 | 79.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 982 | 79.85 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 18 |