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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0306400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Herbicide safener binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.023) R2 : 0.564
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 10.6 (0.436) R2dE : 0.563 R2E : 0.56
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0896 (0.0485) R2dN8 : 0.00421 R2N8 : 0.0011
σ : 0.434
deviance : 86.45
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 151.2
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 0.136

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.26 0.58 2.85 1.1 0.18 -7.95 0.5 117 0.118 11.6 65.91 33 17.3 0.548
176.75 0.624 2.97 0.114 0.176 2.38 0.618 -- 0.0969 13.8 65.91 33 17.3 0.548
151.51 0.573 2.86 1.1 0.181 -7.89 -- 118 0.127 11.5 65.09 31 17.3 0.533
157.15 0.584 2.96 0.173 0.174 3.53 -- -- 0.112 12.3 69.97 32 17.3 0.484
152.12 0.574 2.86 1.07 -- -7.85 -- 118 0.119 -- 65.35 30 17.3 0.507
192.59 0.651 2.97 0.141 0.217 -- 0.769 -- 0.0776 14.9 -- -- -- --
194.58 0.653 2.97 0.159 0.219 -- -- -- 0.0819 14.5 -- -- -- --
136.7 0.545 2.98 0.182 -- 6.53 -- -- 0.193 -- 74.43 20 17.6 0.15
148.27 0.567 2.95 -- 0.147 4.58 -- -- 0.128 10.9 72.01 26 17.4 0.383
197.4 0.657 2.97 0.149 -- -- -- -- 0.0765 -- -- -- -- --
195.25 0.654 2.98 -- 0.216 -- -- -- 0.0643 14.5 -- -- -- --
86.45 0.434 2.97 -- -- 10.6 -- -- 0.0896 -- 151.2 4 17.8 0.136
197.99 0.657 2.98 -- -- -- -- -- 0.0599 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 174.97 humidity 60.0 30 < th dose independent rect. 17 1
3 177.63 humidity 70.0 30 < th dose dependent rect. 17 1
7 179.67 temperature 30.0 30 > th dose dependent rect. 17 1
8 180.02 temperature 30.0 30 > th dose independent rect. 17 1
9 180.10 temperature 10.0 1440 > th dose independent rect. 17 1
13 180.10 radiation 30.0 1440 < th dose independent rect. 17 1
19 180.10 temperature 10.0 1440 > th dose independent rect. 18 23
90 182.92 temperature 10.0 1440 > th dose independent rect. 13 1
94 182.92 atmosphere 995.0 1440 > th dose independent rect. 13 1
97 182.92 temperature 10.0 1440 > th dose independent rect. 14 23
100 182.98 wind 3.0 30 > th dose independent rect. 12 1
117 183.09 radiation 30.0 30 > th dose independent rect. 12 1
119 183.24 radiation 20.0 30 > th dose dependent rect. 12 1
124 183.51 radiation 1.0 30 > th dose dependent rect. 17 1
125 183.54 temperature 25.0 30 > th dose independent rect. 12 1
126 183.55 temperature 25.0 30 > th dose dependent rect. 12 1
129 183.62 atmosphere 1010.0 30 < th dose independent rect. 12 1
131 183.70 wind 1.0 30 > th dose dependent rect. 12 1
186 183.95 humidity 50.0 90 < th dose independent sin 8 NA
190 184.03 atmosphere 1005.0 30 > th dose independent rect. 12 1
191 184.06 humidity 50.0 30 > th dose independent rect. 12 1
192 184.07 humidity 50.0 90 < th dose dependent sin 9 NA
201 184.27 temperature 30.0 30 < th dose independent rect. 12 1
203 184.32 wind 9.0 30 < th dose independent rect. 12 1
204 184.32 temperature 10.0 30 > th dose independent rect. 12 1
206 184.32 atmosphere 995.0 30 > th dose independent rect. 12 1
208 184.32 radiation 1.0 30 > th dose independent rect. 12 1
209 184.32 precipitation 0.1 30 < th dose independent rect. 12 1
210 184.32 temperature 10.0 30 > th dose independent rect. 13 23
211 184.32 precipitation 0.1 30 < th dose dependent rect. 12 1
213 184.35 humidity 50.0 30 > th dose dependent rect. 12 1
215 184.36 atmosphere 1015.0 1440 < th dose independent rect. 17 1
216 184.36 atmosphere 995.0 30 > th dose dependent rect. 12 1
235 184.59 humidity 50.0 90 < th dose dependent rect. 17 22
252 184.64 radiation 1.0 30 > th dose independent rect. 17 1
257 184.67 humidity 90.0 30 < th dose independent rect. 12 1
266 184.79 atmosphere 1015.0 30 < th dose dependent rect. 12 1
270 184.85 humidity 50.0 90 > th dose independent sin 9 NA
271 184.85 humidity 50.0 90 < th dose independent rect. 17 22
334 185.19 wind 9.0 30 < th dose dependent rect. 12 1
338 185.28 humidity 90.0 30 < th dose dependent rect. 12 1
400 185.98 temperature 30.0 10 > th dose independent rect. 12 6
441 186.18 humidity 60.0 10 < th dose dependent sin 10 NA
460 186.32 wind 9.0 30 < th dose independent rect. 13 23
469 186.42 humidity 60.0 10 < th dose independent sin 10 NA
552 186.71 humidity 50.0 90 < th dose dependent no NA NA
553 186.71 humidity 50.0 90 < th dose dependent rect. 10 8
692 186.72 atmosphere 1005.0 90 < th dose independent rect. 16 1
715 186.75 temperature 30.0 10 > th dose independent sin 15 NA
717 186.78 humidity 50.0 10 > th dose independent rect. 17 1
793 186.90 wind 5.0 10 > th dose independent rect. 17 1
867 187.03 atmosphere 1005.0 10 < th dose independent rect. 17 1
874 187.06 humidity 50.0 90 > th dose independent rect. 13 23
877 187.08 atmosphere 995.0 30 > th dose independent rect. 13 23
880 187.10 radiation 10.0 10 < th dose independent rect. 17 1
891 187.20 temperature 30.0 10 > th dose independent rect. 17 20
892 187.20 temperature 30.0 10 > th dose dependent sin 10 NA
897 187.24 atmosphere 1000.0 10 > th dose independent rect. 17 1
904 187.30 wind 1.0 10 > th dose dependent rect. 17 1
970 187.45 humidity 60.0 10 > th dose independent sin 11 NA