BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0275500 Os11g0275500|AK059739
(276 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0275500 Similar to Endo-1,3 490 e-139
Os08g0238200 Dienelactone hydrolase domain containing protein 464 e-131
Os08g0238500 Similar to Endo-1,3 365 e-101
Os11g0275000 Similar to Endo-1,3 344 5e-95
Os11g0275200 Similar to Endo-1,3 323 6e-89
Os08g0239300 Dienelactone hydrolase domain containing protein 318 4e-87
Os05g0400200 255 3e-68
Os05g0400100 Dienelactone hydrolase domain containing protein 253 9e-68
Os05g0399200 Similar to Endo-1,3 226 2e-59
Os08g0239100 Conserved hypothetical protein 221 4e-58
Os05g0399100 Similar to Endo-1,3 221 6e-58
Os08g0238600 Similar to Endo-1,3 218 5e-57
Os08g0283600 114 1e-25
Os08g0236200 Reverse transcriptase, RNA-dependent DNA polym... 102 2e-22
>Os11g0275500 Similar to Endo-1,3
Length = 276
Score = 490 bits (1262), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/276 (88%), Positives = 244/276 (88%)
Query: 1 MQTKPITMAPTSMLHRSXXXXXXXXXXXXXXXXXSPRLQCLENPPELTAAGDGEAGVVVQ 60
MQTKPITMAPTSMLHRS SPRLQCLENPPELTAAGDGEAGVVVQ
Sbjct: 1 MQTKPITMAPTSMLHRSLLCLAVLAAAAGGGAAGSPRLQCLENPPELTAAGDGEAGVVVQ 60
Query: 61 NLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQRRPYN 120
NLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQRRPYN
Sbjct: 61 NLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQRRPYN 120
Query: 121 GDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXXXXXXXXXXXXXXLAVEVAKTNEVG 180
GDPSINITKWIMAHSPVKAAEDSKPIFAALKRE LAVEVAKTNEVG
Sbjct: 121 GDPSINITKWIMAHSPVKAAEDSKPIFAALKREGKYVVGVGGYCWGGKLAVEVAKTNEVG 180
Query: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG
Sbjct: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
Query: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK
Sbjct: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
>Os08g0238200 Dienelactone hydrolase domain containing protein
Length = 276
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/276 (85%), Positives = 237/276 (85%), Gaps = 4/276 (1%)
Query: 1 MQTKPITMAPTSMLHRSXXXXXXXXXXXXXXXXXSPRLQCLENPPELTAAGDGEAGVVVQ 60
MQ KPITMA SML RS PRLQCLENPPELTAAGDGEAGVVVQ
Sbjct: 5 MQAKPITMATASMLLRSLLCLAVLAAAAAAA---QPRLQCLENPPELTAAGDGEAGVVVQ 61
Query: 61 NLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQRRPYN 120
NLGGFAAYVTG AAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQ RPYN
Sbjct: 62 NLGGFAAYVTG-AAHSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQGRPYN 120
Query: 121 GDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXXXXXXXXXXXXXXLAVEVAKTNEVG 180
GDPSINIT+WIMAHSPVKAAEDSKPIFAALKRE LAVEVAKTNEVG
Sbjct: 121 GDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVGVGGYCWGGKLAVEVAKTNEVG 180
Query: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG
Sbjct: 181 AIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPG 240
Query: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK
Sbjct: 241 VAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
>Os08g0238500 Similar to Endo-1,3
Length = 279
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/250 (73%), Positives = 197/250 (78%), Gaps = 9/250 (3%)
Query: 35 SPRLQCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLL 94
S RL CL+NPPELTA GDGEAGVV+ +L GF AYVTG HSGRAI+LASD++GFEAPLL
Sbjct: 31 SLRLPCLDNPPELTADGDGEAGVVIDDLAGFPAYVTGDV-HSGRAIILASDIYGFEAPLL 89
Query: 95 RKIADKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREX 154
R ADKVGEAGYYVVVPDFF +PYNGDPSIN+TKWI HSPVKAAED+K IFAALKRE
Sbjct: 90 RDNADKVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREG 149
Query: 155 XXXX--------XXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILG 206
AVEVAKTNEV AIVISHPS V ADDMK VKCPIEILG
Sbjct: 150 KSVIGIGGYCWGVSAQVQLAAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILG 209
Query: 207 AENDAVTPPRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLAL 266
+ND +TPP LV QFVN LRQ EVDYFARIFPGV+HGFACRYNASN FAV TAEQ+LAL
Sbjct: 210 GQNDPITPPSLVDQFVNVLRQTTEVDYFARIFPGVSHGFACRYNASNQFAVNTAEQALAL 269
Query: 267 MLDWFEKHLK 276
MLDWFEK+LK
Sbjct: 270 MLDWFEKYLK 279
>Os11g0275000 Similar to Endo-1,3
Length = 372
Score = 344 bits (882), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 172/248 (69%), Positives = 189/248 (76%), Gaps = 9/248 (3%)
Query: 37 RLQCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRK 96
RL CL+NPPELTA GD EAGVV+ +L GF AYVTG HSGRAI++ASD++GFEAPLLR
Sbjct: 33 RLPCLDNPPELTADGDSEAGVVIDDLAGFPAYVTGDV-HSGRAIIVASDIYGFEAPLLRD 91
Query: 97 IADKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXX 156
ADKVGEAGYYVVVPDFF +PYNGDPSIN+TKWI HSPVKAAED+K IFAALKRE
Sbjct: 92 NADKVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKS 151
Query: 157 XX--------XXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAE 208
AVEVAKTNEV AIVISHPS V ADDMK VKCPIEILG +
Sbjct: 152 VIGIGGYCWGVSAQVQLTAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQ 211
Query: 209 NDAVTPPRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALML 268
ND +TPP LV QFVN LRQ EVDYF RIFP V+HGFACRYNASN FAV+TA+Q+LALML
Sbjct: 212 NDHITPPSLVDQFVNVLRQTTEVDYFVRIFPDVSHGFACRYNASNQFAVKTAQQALALML 271
Query: 269 DWFEKHLK 276
D L+
Sbjct: 272 DCTSSPLR 279
>Os11g0275200 Similar to Endo-1,3
Length = 266
Score = 323 bits (829), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 160/244 (65%), Positives = 194/244 (79%), Gaps = 10/244 (4%)
Query: 36 PRLQCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLR 95
PRLQC E+PP++ A G GEAGVVV +L G+ AYVTG AAHSGRAIVLASDV+GF+APLLR
Sbjct: 30 PRLQCFEHPPDMKAGG-GEAGVVVHDLAGYEAYVTG-AAHSGRAIVLASDVYGFQAPLLR 87
Query: 96 KIADKVGEAGYYVVVPDFFQRRPYNGDP---SINITKWIMAHSPVKAAEDSKPIFAALKR 152
+IADKVG+AGYYVVVPD F +GDP ++N T+W+ +HSPVK AE +K IFA L+
Sbjct: 88 QIADKVGDAGYYVVVPDLF-----HGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRN 142
Query: 153 EXXXXXXXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAV 212
E AVEVAKTNEV A+VISHP +VTADDMK+VK PIEILG +ND V
Sbjct: 143 EGKSLVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTV 202
Query: 213 TPPRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFE 272
TPPRLVYQ+V+ALRQR ++D++A+IFPGV+HGFA RYN S+PFA+ T +Q+LALMLDWF+
Sbjct: 203 TPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQ 262
Query: 273 KHLK 276
KHLK
Sbjct: 263 KHLK 266
>Os08g0239300 Dienelactone hydrolase domain containing protein
Length = 263
Score = 318 bits (814), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 168/243 (69%), Positives = 190/243 (78%), Gaps = 5/243 (2%)
Query: 36 PRLQCLENPPELTAAGDGEAGVVV-QNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLL 94
P QCL+NPP+LT AG G VV +LGGF AYVTG A HS R I+LA+D+FGFEAPLL
Sbjct: 24 PHSQCLDNPPDLTTAGGGGEAGVVVHDLGGFEAYVTG-AVHSRRTILLATDIFGFEAPLL 82
Query: 95 RKIADKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREX 154
RKIADKVG AGYYVVVPD F +PY D N T+W+ AHSPVKAAED+KPIFAAL +E
Sbjct: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQ--NRTEWLSAHSPVKAAEDAKPIFAALSKEG 140
Query: 155 XXXXXXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTP 214
AVEVAKTNEV AIVISHP++VTADDMK+VK PIEILGA+ND VTP
Sbjct: 141 KSIVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTP 200
Query: 215 PRLVYQFVNALRQRP-EVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEK 273
PRLVYQFV+ALRQR ++DYFA++F GV HGFACRYNASNPF V+ AEQ+LALMLDWF K
Sbjct: 201 PRLVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHK 260
Query: 274 HLK 276
HLK
Sbjct: 261 HLK 263
>Os05g0400200
Length = 290
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/237 (53%), Positives = 159/237 (67%), Gaps = 1/237 (0%)
Query: 40 CLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIAD 99
CL+N P +T GEAG VV + GG YVTG + SGRAI+L SD +GF AP LR+IAD
Sbjct: 47 CLDNSPNMTEKTGGEAGEVVHDYGGLECYVTG-SRRSGRAIILVSDYYGFRAPKLRQIAD 105
Query: 100 KVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXXXXX 159
KV +GYYVVVPD PY DP+ WIMAHSP +AAE +KP+ A LK+E
Sbjct: 106 KVAYSGYYVVVPDLLYGDPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVG 165
Query: 160 XXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVY 219
+AVE++KT E A+VISHPS VT DM +VK PIEILG E D +TPP +V+
Sbjct: 166 VGGYCWGGKVAVELSKTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTITPPLVVH 225
Query: 220 QFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
QF +AL Q VD+F + FP H FACRYNAS+PFAV+TAE++ A M+ WF+++LK
Sbjct: 226 QFEHALDQNNRVDHFVKTFPKAPHAFACRYNASDPFAVKTAEEARADMVQWFDEYLK 282
>Os05g0400100 Dienelactone hydrolase domain containing protein
Length = 290
Score = 253 bits (647), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
Query: 40 CLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIAD 99
CLENPP +T GEAG VV GG Y TG GRA++L SD +GF AP LRKIAD
Sbjct: 49 CLENPPNMTENTGGEAGDVVHGYGGLECYATGSRRSGGRAVILVSDYYGFRAPKLRKIAD 108
Query: 100 KVG-EAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXXXX 158
KV + G YVVVPD PY DP+ +WI HSPV+AAE +KP+ AALK++
Sbjct: 109 KVAYQLGCYVVVPDLLFGDPYTDDPARPFEEWIKTHSPVEAAEKTKPLIAALKKDGTSTV 168
Query: 159 XXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLV 218
+AVE++KT E A+VISHP+ V DDMK+VKCPIEILG E D ++PP+L+
Sbjct: 169 GVGGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTISPPQLI 228
Query: 219 YQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
+Q +AL Q V + +IFP HGFACRYNA++PFAV+TAE++ A M+ WF+K+L+
Sbjct: 229 HQLEDALDQNKRVHHLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWFDKYLE 286
>Os05g0399200 Similar to Endo-1,3
Length = 239
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/238 (49%), Positives = 151/238 (63%), Gaps = 3/238 (1%)
Query: 39 QCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIA 98
QC ENPP L AG G G VV + GG AYV G A S A+VL SD FGFEAP LRKIA
Sbjct: 5 QCWENPPALDPAGGG--GEVVGDFGGQKAYVAGSAG-SKAAVVLISDAFGFEAPNLRKIA 61
Query: 99 DKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXXXX 158
DKV GY+VVVPDF PY D N W+ +H+P +A E++KP+ AALK +
Sbjct: 62 DKVALFGYFVVVPDFLHGDPYQPDNPNNPGIWLQSHNPKEAFEEAKPVIAALKEKGASFI 121
Query: 159 XXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLV 218
+ VE+ K +E+ A V+ HPS + DD+K+VKCPI ILGAE D +PP L+
Sbjct: 122 GAAGYCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPELL 181
Query: 219 YQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
QF L PE+ +F +IFPGV HG+A RYN + AV++AE++L M+DWF+K+LK
Sbjct: 182 KQFEQILSPNPEIAHFVKIFPGVEHGWAVRYNHDDAAAVKSAEEALEDMMDWFKKYLK 239
>Os08g0239100 Conserved hypothetical protein
Length = 208
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/192 (59%), Positives = 137/192 (71%), Gaps = 10/192 (5%)
Query: 39 QCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIA 98
QCL+NPP+LTA G GEAGVVV +L GF AYVTG A HS +A++LASDVFGFEAPLLRKIA
Sbjct: 24 QCLDNPPDLTAGG-GEAGVVVHDLAGFEAYVTG-AVHSTKAVLLASDVFGFEAPLLRKIA 81
Query: 99 DKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXXXX 158
DKVG+AGYYV VPDFF PY D +N+T+W HSP+K A +K +
Sbjct: 82 DKVGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNY 139
Query: 159 XXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLV 218
AVEVAKTNEV AIV +HP VT DD+K+VKCPIEI+GA+ND +TPP+LV
Sbjct: 140 IQRK------FAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLV 193
Query: 219 YQFVNALRQRPE 230
YQ+V ALR R +
Sbjct: 194 YQYVQALRHRTD 205
>Os05g0399100 Similar to Endo-1,3
Length = 284
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/244 (50%), Positives = 153/244 (62%), Gaps = 14/244 (5%)
Query: 39 QCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIA 98
QC NPP L AG GE G VV++ GG AYV G AA S A+VL SDVFGFEAP LRKIA
Sbjct: 49 QCCANPPTLNPAG-GE-GKVVESFGGIKAYVAG-AAESKAAVVLISDVFGFEAPNLRKIA 105
Query: 99 DKVGEAGYYVVVPDFFQRRPYNGDPSIN------ITKWIMAHSPVKAAEDSKPIFAALKR 152
DKV +GY+VVVPDF +GDP + WI H P KA E++KPI AALK
Sbjct: 106 DKVASSGYFVVVPDFL-----HGDPLVPESTEKPFQMWIKEHGPDKAFEEAKPIIAALKE 160
Query: 153 EXXXXXXXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAV 212
+ + VE+ K +E+ A V+ HPS VT DDMK+VKCPI ILGAE D +
Sbjct: 161 KGVSSIGAVGYCWGAKVVVELVKAHEIQAAVMCHPSFVTVDDMKEVKCPIAILGAEIDRM 220
Query: 213 TPPRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFE 272
+PP +V QF L + + +F +IFPGV HG+ RY + AV++AE++LA M+DWF
Sbjct: 221 SPPEVVKQFEQVLSSKSGIGHFVKIFPGVEHGWTVRYKNDDAAAVKSAEEALADMIDWFN 280
Query: 273 KHLK 276
K+LK
Sbjct: 281 KNLK 284
>Os08g0238600 Similar to Endo-1,3
Length = 173
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/173 (61%), Positives = 130/173 (75%), Gaps = 8/173 (4%)
Query: 107 YVVVPDFFQRRPYNGDP---SINITKWIMAHSPVKAAEDSKPIFAALKREXXXXXXXXXX 163
YVVVPD F +GDP S+N T+W+ +HSPVK AE +K IFA L+ E
Sbjct: 6 YVVVPDLF-----HGDPATTSVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGY 60
Query: 164 XXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVN 223
AV VAKTNEV A+VISHP +VTADDMK+VK PIEILG +ND VTPPRLVYQ+V+
Sbjct: 61 CWGGKFAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVH 120
Query: 224 ALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
ALRQR ++D++A+IFPGV+HGFA RYN S+PFAV T +Q+LALMLDWF+KHLK
Sbjct: 121 ALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHLK 173
>Os08g0283600
Length = 290
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 56/59 (94%)
Query: 95 RKIADKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKRE 153
RKIADKVGEAGYYVVVPDFF RPYNG+PSINIT+WIMAHSPVKAAED+K IFAALKRE
Sbjct: 87 RKIADKVGEAGYYVVVPDFFHGRPYNGEPSINITQWIMAHSPVKAAEDAKLIFAALKRE 145
>Os08g0236200 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 624
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/46 (97%), Positives = 45/46 (97%)
Query: 231 VDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
VDYFARIFPGVAHGFACRYN SNPFAVRTAEQSLALMLDWFEKHLK
Sbjct: 579 VDYFARIFPGVAHGFACRYNGSNPFAVRTAEQSLALMLDWFEKHLK 624
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,894,028
Number of extensions: 345883
Number of successful extensions: 775
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 14
Length of query: 276
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 177
Effective length of database: 11,866,615
Effective search space: 2100390855
Effective search space used: 2100390855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)