Os08g0236200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os08g0236200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 448.76 | 0.995 | 8.63 | -5.85 | 1.77 | 2.63 | -0.409 | -5.95 | -0.709 | 22.5 | 25.92 | 937 | 8.58 | -- |
| 456.62 | 0.995 | 8.55 | -4.8 | 1.81 | 2.08 | -0.675 | -- | -0.61 | 22.3 | 25.41 | 952 | 9 | -- |
| 449.22 | 0.987 | 8.64 | -5.95 | 1.8 | 2.69 | -- | -6.8 | -0.686 | 22.5 | 26.08 | 935 | 8.13 | -- |
| 457.69 | 0.996 | 8.51 | -4.71 | 1.86 | 1.96 | -- | -- | -0.465 | 22.5 | 26.2 | 936 | 8.21 | -- |
| 549.74 | 1.09 | 8.7 | -5.97 | -- | 4.06 | -- | -5.82 | -1.27 | -- | 22.19 | 720 | 10.8 | -- |
| 580.52 | 1.13 | 8.51 | -4.31 | 2.28 | -- | -0.245 | -- | -0.529 | 23.1 | -- | -- | -- | -- |
| 580.78 | 1.13 | 8.51 | -4.3 | 2.28 | -- | -- | -- | -0.529 | 23.1 | -- | -- | -- | -- |
| 498.24 | 1.04 | 8.52 | -5 | -- | 3.89 | -- | -- | -0.778 | -- | 9.039 | 911 | 14 | -- |
| 1020.25 | 1.49 | 8.34 | -- | 2.09 | 1.07 | -- | -- | 0.185 | 22.8 | 30.6 | 966 | 7.03 | -- |
| 905.58 | 1.41 | 8.46 | -4.25 | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
| 1068.48 | 1.53 | 8.4 | -- | 2.24 | -- | -- | -- | -0.0496 | 23 | -- | -- | -- | -- |
| 1061.03 | 1.52 | 8.37 | -- | -- | 2.45 | -- | -- | -0.122 | -- | -17.06 | 211 | 8.52 | -- |
| 1381.48 | 1.73 | 8.35 | -- | -- | -- | -- | -- | -0.0381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 460.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 2 | 460.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 5 | 461.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 20 | 463.23 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 33 | 465.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 51 | 469.52 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 54 | 469.94 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 72 | 472.24 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 95 | 473.23 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 96 | 473.31 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 110 | 473.43 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 133 | 474.25 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 137 | 474.52 | humidity | 50 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 170 | 475.56 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 171 | 475.62 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 295 | 477.57 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 296 | 477.65 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 365 | 478.44 | radiation | 1 | 270 | > th | dose independent | sin | 16 | NA |
| 371 | 478.56 | humidity | 60 | 90 | > th | dose dependent | rect. | 19 | 7 |
| 373 | 478.58 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 374 | 478.59 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 400 | 478.79 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 437 | 479.41 | radiation | 1 | 270 | < th | dose dependent | sin | 16 | NA |
| 442 | 479.51 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 460 | 479.60 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 467 | 479.76 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 469 | 479.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 546 | 480.56 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 574 | 480.86 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 595 | 481.00 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 597 | 481.02 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 700 | 481.55 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 745 | 481.82 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 928 | 482.58 | radiation | 1 | 270 | < th | dose independent | sin | 16 | NA |
| 931 | 482.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 974 | 483.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 992 | 483.31 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |