BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0236200 Os08g0236200|Os08g0236200
         (624 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               60   4e-09

>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 225 RTINNSIRTLLIQASMPPSYWAEALATATYLLNRRPSTSVRNSIPYQLLHNKLPDYSNLR 284
           RTI   +R++L +  +P ++ A+A  TA +++N+ PST++   +P ++    +P YS LR
Sbjct: 3   RTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLR 62

Query: 285 VFGCLCYPNLSATTPHKLSPRS 306
            FGC+ Y +       KL PR+
Sbjct: 63  RFGCVAYIHCDEG---KLKPRA 81



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,820,025
Number of extensions: 530623
Number of successful extensions: 1126
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 519
Effective length of database: 8,227,889
Effective search space: 4270274391
Effective search space used: 4270274391
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)