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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0238600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.01 (0.0516) R2 : 0.689
β1 : -5.44 (0.194) R2dD : 0.599 R2D : 0.388
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.33 (0.165) R2dE : 0.311 R2E : 0.107
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.472 (0.113) R2dN8 : 0.0168 R2N8 : -0.0471
σ : 0.958
deviance : 423.15
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 22.4
memory length : 1144
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
411.84 0.953 6.11 -6.51 0.361 3.41 -1.28 -3.81 -0.662 4.77 23.49 1229 12.4 --
416.63 0.951 6.02 -5.45 0.294 3.14 -1.59 -- -0.485 4.41 22.4 1178 11.7 --
415.27 0.949 6.1 -6.42 0.342 3.4 -- -3.6 -0.652 4.9 23.32 1193 12.2 --
422.45 0.957 6 -5.46 0.206 3.21 -- -- -0.45 5.17 22.6 1168 11.5 --
416.17 0.95 6.1 -6.36 -- 3.58 -- -3.54 -0.672 -- 22.95 1153 11 --
737.79 1.27 5.89 -4.53 1.06 -- -0.618 -- 0.0792 3.18 -- -- -- --
739.01 1.27 5.88 -4.52 1.05 -- -- -- 0.083 3.11 -- -- -- --
423.15 0.958 6.01 -5.44 -- 3.33 -- -- -0.472 -- 22.4 1144 10.8 --
1137.77 1.57 5.74 -- 0.359 2.14 -- -- 0.733 3.27 26.3 1008 6.1 --
802.48 1.32 5.88 -4.47 -- -- -- -- 0.11 -- -- -- -- --
1276.75 1.67 5.77 -- 0.966 -- -- -- 0.586 3.09 -- -- -- --
1143.98 1.58 5.77 -- -- 2.41 -- -- 0.577 -- 25.36 953 6.81 --
1330.02 1.7 5.77 -- -- -- -- -- 0.607 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 429.62 temperature 25 1440 > th dose dependent rect. 16 1
2 429.84 temperature 25 1440 > th dose dependent rect. 15 7
4 429.99 temperature 25 1440 > th dose dependent rect. 15 5
35 433.87 temperature 25 1440 > th dose dependent rect. 14 19
40 434.13 temperature 25 1440 > th dose dependent rect. 15 17
53 434.68 temperature 25 1440 > th dose dependent sin 17 NA
116 437.51 temperature 10 1440 > th dose dependent rect. 17 2
164 439.89 temperature 25 1440 > th dose dependent rect. 6 17
255 441.71 temperature 25 1440 > th dose dependent no NA NA
282 442.18 temperature 25 1440 > th dose dependent rect. 21 23
596 452.30 temperature 30 1440 < th dose dependent rect. 18 1
836 460.69 temperature 30 1440 < th dose independent rect. 14 22
837 460.73 temperature 30 1440 < th dose independent rect. 14 14
846 460.89 temperature 30 1440 < th dose independent rect. 14 17
853 461.00 temperature 30 1440 < th dose independent rect. 14 11
863 461.09 temperature 30 1440 < th dose independent rect. 14 5
873 461.21 temperature 30 1440 < th dose independent rect. 14 8
896 461.59 temperature 30 1440 < th dose independent rect. 14 20
897 461.61 temperature 30 1440 < th dose independent sin 17 NA
906 461.73 temperature 30 1440 > th dose independent rect. 14 5
923 461.76 temperature 30 1440 < th dose independent rect. 18 22
954 462.28 temperature 30 1440 < th dose independent rect. 9 19
964 462.45 temperature 30 1440 < th dose independent rect. 9 16
969 462.51 temperature 30 1440 < th dose independent rect. 9 10
974 462.58 temperature 30 1440 < th dose independent rect. 9 13
980 462.64 temperature 30 1440 < th dose independent rect. 11 17
992 462.75 temperature 30 1440 < th dose independent rect. 11 20