BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0238600 Os08g0238600|AK059758
         (173 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23570.1  | chr3:8458052-8459608 REVERSE LENGTH=240            144   3e-35
AT3G23600.1  | chr3:8473833-8475655 FORWARD LENGTH=240            133   5e-32
AT1G35420.2  | chr1:13026320-13027463 FORWARD LENGTH=316           60   7e-10

>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
          Length = 239

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 3/171 (1%)

Query: 6   YVVVPDLFHGDP---ATTSVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCW 62
           Y VVPD FHGDP         F  W++ H   K  E++K I   L+N+G + +G  G+CW
Sbjct: 69  YAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGITSIGAAGFCW 128

Query: 63  GGKFAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHAL 122
           G K AV +AK   V+A V+ HP  VT DD+KEV  PI +LG + D V+PP LV Q+   L
Sbjct: 129 GAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPELVRQFEDIL 188

Query: 123 RQRNDIDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHLK 173
             +  +  + KIFP   HG+  RYN +DP  VE   +A   ML W   +LK
Sbjct: 189 ASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYLK 239



>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
          Length = 239

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 3/171 (1%)

Query: 6   YVVVPDLFHGDPATTSVN---FTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCW 62
           YVVVPD F GDP   S        W++ H   K  E  K +   ++N+G + +G  G CW
Sbjct: 69  YVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGITAIGAAGMCW 128

Query: 63  GGKFAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHAL 122
           G K  V ++K   ++A V+ HP  V  DD+K  K PI ILG + D ++PP L+ Q+   L
Sbjct: 129 GAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPALLKQFEEIL 188

Query: 123 RQRNDIDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHLK 173
             + +++ Y KI P VSHG+  RYN  +P AV+  ++A   MLDWF  ++K
Sbjct: 189 SSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239



>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
          Length = 315

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 17/177 (9%)

Query: 7   VVVPDLFHGDPATTS---VNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSV-----VGVG 58
           V+VPDLF GDP + +     + EW   H P +  +   +   ++  E  +      +GV 
Sbjct: 144 VLVPDLFRGDPWSKNRPKSEYEEWRRGHDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVM 203

Query: 59  GYCWGGKFAVTVAKTNEVEAVVISHPYAVTADDMK---EVKWPIEILGGQNDTVTPPRLV 115
           G+C+GG   V V  T+E         +  T  D     +VK P+  + G  D +   + +
Sbjct: 204 GFCFGGGRVVDVLATDESGYFSTGVSFYGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGL 263

Query: 116 YQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHL 172
           Y+    + + + +     ++ G  HGF  R  T  P      ++A ALM +W   HL
Sbjct: 264 YEIEEKIGEGSKV----VVYEGRGHGFVHRPET--PEDDRDAEEAFALMRNWLHHHL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,997,083
Number of extensions: 159141
Number of successful extensions: 383
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 3
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)