Os05g0399100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-).
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Os05g0399100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.47 | 0.202 | 14.5 | -0.244 | 0.83 | -1.41 | 0.476 | 0.6 | 0.173 | 3.27 | 0.112 | 683 | -- | -- |
| 18.73 | 0.202 | 14.5 | -0.22 | 0.835 | -1.42 | 0.81 | -- | 0.181 | 3.38 | 0.1108 | 684 | -- | -- |
| 18.77 | 0.202 | 14.5 | -0.268 | 0.83 | -1.41 | -- | 1.08 | 0.171 | 3.27 | 0.1103 | 680 | -- | -- |
| 20.87 | 0.213 | 14.5 | -0.233 | 0.835 | -1.44 | -- | -- | 0.174 | 3.4 | 0.11 | 689 | -- | -- |
| 20.52 | 0.211 | 14.5 | -0.296 | -- | -1.05 | -- | 1.42 | 0.131 | -- | 0.03001 | 1002 | -- | -- |
| 25.17 | 0.235 | 14.5 | -0.0893 | 0.641 | -- | -0.0125 | -- | 0.233 | 20.2 | -- | -- | -- | -- |
| 25.18 | 0.235 | 14.5 | -0.089 | 0.641 | -- | -- | -- | 0.233 | 20.3 | -- | -- | -- | -- |
| 19.36 | 0.205 | 14.5 | -0.26 | -- | -1.16 | -- | -- | 0.149 | -- | 0.03795 | 1058 | -- | -- |
| 22.26 | 0.22 | 14.5 | -- | 0.815 | -1.39 | -- | -- | 0.202 | 3.26 | 0.12 | 686 | -- | -- |
| 47.92 | 0.323 | 14.5 | -0.0935 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 25.38 | 0.236 | 14.5 | -- | 0.642 | -- | -- | -- | 0.243 | 20.2 | -- | -- | -- | -- |
| 21.06 | 0.214 | 14.5 | -- | -- | -1.11 | -- | -- | 0.184 | -- | 0.04552 | 1051 | -- | -- |
| 48.15 | 0.324 | 14.5 | -- | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 2 | 18.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 10 | 19.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 8 |
| 11 | 19.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 14 | 19.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 16 | 19.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 20 | 19.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 29 | 19.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 35 | 19.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 39 | 19.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 40 | 19.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 54 | 19.32 | temperature | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 55 | 19.32 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 57 | 19.33 | radiation | 1 | 720 | < th | dose dependent | sin | 3 | NA |
| 67 | 19.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 85 | 19.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 89 | 19.42 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 90 | 19.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 94 | 19.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 124 | 19.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 144 | 19.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 18 |
| 148 | 19.58 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 173 | 19.64 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 180 | 19.65 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 6 |
| 185 | 19.65 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 186 | 19.66 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 16 |
| 204 | 19.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 17 |
| 218 | 19.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 233 | 19.73 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 235 | 19.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 241 | 19.75 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 277 | 19.80 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 284 | 19.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 307 | 19.84 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 332 | 19.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 346 | 19.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 347 | 19.90 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 348 | 19.90 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 362 | 19.92 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 18 |
| 452 | 20.01 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 18 |
| 479 | 20.04 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 14 |
| 495 | 20.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 521 | 20.08 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 541 | 20.10 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 554 | 20.11 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 19 |
| 557 | 20.11 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 582 | 20.13 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 23 |
| 610 | 20.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 613 | 20.16 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 621 | 20.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 623 | 20.17 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 23 |
| 653 | 20.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 656 | 20.19 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 663 | 20.19 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 683 | 20.21 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 705 | 20.22 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 707 | 20.22 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 12 |
| 765 | 20.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 766 | 20.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 807 | 20.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 808 | 20.24 | radiation | 1 | 720 | > th | dose independent | sin | 12 | NA |
| 847 | 20.26 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 23 |
| 899 | 20.28 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 949 | 20.29 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 982 | 20.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 985 | 20.30 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 18 |