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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0275500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.62 (0.055) R2 : 0.675
β1 : -5.19 (0.206) R2dD : 0.492 R2D : 0.346
β2 : 1.86 (0.134) R2dC : 0.142 R2C : 0.182
β3 : 1.99 (0.159) R2dE : 0.123 R2E : 0.0573
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.328 (0.117) R2dN8 : 0.00829 R2N8 : -0.0103
σ : 1.03
deviance : 485.87
__
_____
C
peak time of C : 22.7
E
wheather : temperature
threshold : 27.6
memory length : 1188
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
476.73 1.03 6.8 -6.72 1.84 2.76 -0.635 -7.06 -0.585 22.7 27.61 1206 -- --
483.99 1.02 6.66 -5.27 1.81 2.13 -0.932 -- -0.433 22.8 27.07 1157 -- --
478.3 1.02 6.81 -6.67 1.83 2.76 -- -7 -0.611 22.7 27.46 1194 -- --
485.87 1.03 6.62 -5.19 1.86 1.99 -- -- -0.328 22.7 27.6 1188 -- --
610.69 1.15 6.84 -6.85 -- 3.88 -- -6.83 -1.1 -- 24.6 954 -- --
650.12 1.2 6.64 -4.64 2.16 -- -0.351 -- -0.419 23 -- -- -- --
650.64 1.19 6.64 -4.62 2.16 -- -- -- -0.418 23 -- -- -- --
629.26 1.17 6.67 -5.44 -- 3.24 -- -- -0.742 -- 24.57 950 -- --
1148.47 1.58 6.49 -- 1.98 1.14 -- -- 0.309 22.9 31.1 1112 -- --
942.12 1.43 6.59 -4.57 -- -- -- -- -0.402 -- -- -- -- --
1213.77 1.63 6.53 -- 2.12 -- -- -- 0.0964 22.9 -- -- -- --
1358.25 1.72 6.5 -- -- 2.09 -- -- 0.0131 -- 25.24 925 -- --
1493.82 1.8 6.48 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 481.10 temperature 25 720 > th dose dependent rect. 17 16
6 487.84 temperature 25 720 > th dose dependent sin 12 NA
12 490.26 temperature 30 1440 > th dose dependent sin 15 NA
15 490.49 temperature 30 1440 > th dose dependent rect. 13 6
29 490.52 temperature 30 1440 > th dose dependent rect. 13 21
35 490.67 radiation 20 1440 > th dose independent rect. 16 15
105 492.07 temperature 25 720 > th dose dependent rect. 16 8
155 492.31 temperature 30 1440 > th dose dependent no NA NA
248 492.44 radiation 20 1440 > th dose independent rect. 16 1
295 493.41 temperature 30 1440 > th dose independent sin 12 NA
313 493.94 temperature 30 1440 > th dose independent rect. 15 4
345 494.17 temperature 30 1440 < th dose independent sin 12 NA
363 494.57 temperature 30 1440 > th dose independent rect. 15 19
388 495.06 temperature 30 1440 < th dose independent rect. 15 19
391 495.16 temperature 30 1440 < th dose independent rect. 15 12
399 495.50 radiation 20 1440 < th dose independent rect. 16 11
402 495.53 radiation 20 1440 < th dose independent rect. 16 1
413 495.76 temperature 30 1440 < th dose independent rect. 15 4
431 495.88 radiation 10 1440 > th dose dependent rect. 16 15
445 496.33 radiation 10 1440 > th dose dependent rect. 16 2
490 497.22 radiation 20 1440 < th dose independent rect. 16 4
524 498.08 temperature 30 1440 < th dose independent rect. 9 18
531 498.14 temperature 30 1440 > th dose independent rect. 9 10
585 498.33 temperature 30 1440 < th dose independent rect. 9 13
587 498.34 temperature 30 1440 < th dose independent rect. 9 10
603 498.64 radiation 30 1440 > th dose independent rect. 7 1
650 498.94 temperature 30 1440 < th dose independent rect. 17 23
656 498.98 temperature 30 1440 < th dose independent rect. 21 22
659 499.00 temperature 30 1440 < th dose independent no NA NA
662 499.00 temperature 30 1440 < th dose independent rect. 23 23
663 499.01 temperature 30 1440 < th dose independent rect. 23 20
666 499.01 temperature 30 1440 < th dose independent rect. 2 23
669 499.02 temperature 30 1440 > th dose independent rect. 17 23
718 499.12 temperature 30 1440 > th dose independent no NA NA
838 499.19 temperature 30 1440 < th dose independent rect. 2 20
843 499.20 temperature 30 1440 < th dose independent rect. 2 17
955 500.11 radiation 40 1440 < th dose dependent rect. 16 11