BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0275500 Os11g0275500|AK059739
         (276 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23600.1  | chr3:8473833-8475655 FORWARD LENGTH=240            189   2e-48
AT3G23570.1  | chr3:8458052-8459608 REVERSE LENGTH=240            187   7e-48
AT1G35420.2  | chr1:13026320-13027463 FORWARD LENGTH=316           72   2e-13

>AT3G23600.1 | chr3:8473833-8475655 FORWARD LENGTH=240
          Length = 239

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 140/240 (58%), Gaps = 7/240 (2%)

Query: 39  QCLENPPELT-AAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKI 97
           QC ENPP L   +G G     V+ LGG  AYV+G +A S   ++L SD+FGFEAP LR +
Sbjct: 5   QCCENPPTLNPVSGSGH----VEKLGGLDAYVSG-SAESKLCVLLISDIFGFEAPNLRAL 59

Query: 98  ADKVGEAGYYVVVPDFFQRRPYN-GDPSINITKWIMAHSPVKAAEDSKPIFAALKREXXX 156
           ADKV  +G+YVVVPD+F   PYN  +    I  WI  H   K  E++KP+   +K +   
Sbjct: 60  ADKVAASGFYVVVPDYFGGDPYNPSNQDRPIPVWIKDHGCDKGFENTKPVLETIKNKGIT 119

Query: 157 XXXXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPR 216
                       + VE++K   + A V+ HPS V  DD+K  K PI ILGAE D ++PP 
Sbjct: 120 AIGAAGMCWGAKVVVELSKEELIQAAVLLHPSFVNVDDIKGGKAPIAILGAEIDQMSPPA 179

Query: 217 LVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
           L+ QF   L  +PEV+ + +I P V+HG+  RYN   P AV+ AE++   MLDWF  ++K
Sbjct: 180 LLKQFEEILSSKPEVNSYVKIHPKVSHGWTVRYNIDEPEAVKAAEEAHKEMLDWFVTYIK 239



>AT3G23570.1 | chr3:8458052-8459608 REVERSE LENGTH=240
          Length = 239

 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 105/240 (43%), Positives = 136/240 (56%), Gaps = 7/240 (2%)

Query: 39  QCLENPPELT-AAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKI 97
           QC ENPP+L   +G G     V+ LG    YV G + HS  A++L   VFG+E P LRK+
Sbjct: 5   QCTENPPDLDPTSGSGH----VEKLGNLDTYVCG-STHSKLAVLLVPHVFGYETPNLRKL 59

Query: 98  ADKVGEAGYYVVVPDFFQRRPYNGDPSIN-ITKWIMAHSPVKAAEDSKPIFAALKREXXX 156
           ADKV EAG+Y VVPDFF   PYN +        W+  H   K  E+SKPI  ALK +   
Sbjct: 60  ADKVAEAGFYAVVPDFFHGDPYNPENQDRPFPIWMKDHELEKGFEESKPIVEALKNKGIT 119

Query: 157 XXXXXXXXXXXXLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPR 216
                       +AVE+AK   V A V+ HP+ VT DD+K+V  PI +LGAE D V+PP 
Sbjct: 120 SIGAAGFCWGAKVAVELAKEKLVDATVLLHPARVTVDDIKEVNLPIAVLGAEIDQVSPPE 179

Query: 217 LVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
           LV QF + L  +P+V  F +IFP   HG+  RYN ++P  V  A ++   ML W   +LK
Sbjct: 180 LVRQFEDILASKPQVKSFVKIFPRCKHGWTVRYNENDPSEVEAAMEAHKDMLAWLIDYLK 239



>AT1G35420.2 | chr1:13026320-13027463 FORWARD LENGTH=316
          Length = 315

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 15/210 (7%)

Query: 75  HSGRAIVLASDVFGFEAPLLRKIADKVGEAGYYVVVPDFFQRRPYNGD-PSINITKWIMA 133
           ++G  ++L SDVFGF+    R  A +V   GY V+VPD F+  P++ + P     +W   
Sbjct: 111 NNGTGLLLLSDVFGFQDSATRDFAYRVACNGYNVLVPDLFRGDPWSKNRPKSEYEEWRRG 170

Query: 134 HSPVKAAEDSKPIFAALKREXXXXXXXXXXXXXXXL-----AVEVAKTNEVGAI---VIS 185
           H P +  +D+      +  E                      V+V  T+E G     V  
Sbjct: 171 HDPNRIRQDTTTFTKWMVEEFAAAGISKKLGVMGFCFGGGRVVDVLATDESGYFSTGVSF 230

Query: 186 HPSSVTADDMKDVKCPIEILGAENDAVTPPRLVYQFVNALRQRPEVDYFARIFPGVAHGF 245
           + + + +    DVK P+  +  + D +   + +Y+    + +  +V     ++ G  HGF
Sbjct: 231 YGTRIDSAVAGDVKVPVLFIAGDRDPLCEVKGLYEIEEKIGEGSKV----VVYEGRGHGF 286

Query: 246 ACRYNASNPFAVRTAEQSLALMLDWFEKHL 275
             R     P   R AE++ ALM +W   HL
Sbjct: 287 VHR--PETPEDDRDAEEAFALMRNWLHHHL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,399,653
Number of extensions: 200740
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 179
Effective length of database: 8,447,217
Effective search space: 1512051843
Effective search space used: 1512051843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)