BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0275200 Os11g0275200|AK066677
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0275200 Similar to Endo-1,3 501 e-142
Os08g0238200 Dienelactone hydrolase domain containing protein 370 e-103
Os08g0239300 Dienelactone hydrolase domain containing protein 359 1e-99
Os11g0275500 Similar to Endo-1,3 357 3e-99
Os08g0238600 Similar to Endo-1,3 345 2e-95
Os08g0238500 Similar to Endo-1,3 340 6e-94
Os11g0275000 Similar to Endo-1,3 325 2e-89
Os05g0400200 280 7e-76
Os05g0400100 Dienelactone hydrolase domain containing protein 266 1e-71
Os08g0239100 Conserved hypothetical protein 246 1e-65
Os05g0399100 Similar to Endo-1,3 239 2e-63
Os05g0399200 Similar to Endo-1,3 228 2e-60
Os08g0283600 98 5e-21
Os08g0236200 Reverse transcriptase, RNA-dependent DNA polym... 82 3e-16
>Os11g0275200 Similar to Endo-1,3
Length = 266
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/266 (92%), Positives = 245/266 (92%)
Query: 1 MQINHMXXXXXXXXXXXXXXXXXXXXXVPPRLQCFEHPPDMKAGGGEAGVVVHDLAGYEA 60
MQINHM VPPRLQCFEHPPDMKAGGGEAGVVVHDLAGYEA
Sbjct: 1 MQINHMATASLSLLLCLAAAAGAAAAAVPPRLQCFEHPPDMKAGGGEAGVVVHDLAGYEA 60
Query: 61 YVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEW 120
YVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEW
Sbjct: 61 YVTGAAHSGRAIVLASDVYGFQAPLLRQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEW 120
Query: 121 LESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAV 180
LESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAV
Sbjct: 121 LESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAV 180
Query: 181 TADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYN 240
TADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYN
Sbjct: 181 TADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYN 240
Query: 241 TSDPFALETGKQALALMLDWFQKHLK 266
TSDPFALETGKQALALMLDWFQKHLK
Sbjct: 241 TSDPFALETGKQALALMLDWFQKHLK 266
>Os08g0238200 Dienelactone hydrolase domain containing protein
Length = 276
Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/240 (72%), Positives = 207/240 (86%), Gaps = 3/240 (1%)
Query: 30 PRLQCFEHPPDMKAGG-GEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQ 88
PRLQC E+PP++ A G GEAGVVV +L G+ AYVTGAAHSGRAIVLASDV+GF+APLLR+
Sbjct: 37 PRLQCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRK 96
Query: 89 IADKVGDAGYYVVVPDLFHGDP--ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKS 146
IADKVG+AGYYVVVPD F G P ++N T+W+ +HSPVK AE +K IFA L+ EGKS
Sbjct: 97 IADKVGEAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKS 156
Query: 147 LVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPR 206
+VGVGGYCWGGK AVEVAKTNEV A+VISHP +VTADDMK+VK PIEILG +ND VTPPR
Sbjct: 157 VVGVGGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPR 216
Query: 207 LVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
LVYQ+V+ALRQR ++D++A+IFPGV+HGFA RYN S+PFA+ T +Q+LALMLDWF+KHLK
Sbjct: 217 LVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFEKHLK 276
>Os08g0239300 Dienelactone hydrolase domain containing protein
Length = 263
Score = 359 bits (921), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/241 (73%), Positives = 199/241 (82%), Gaps = 3/241 (1%)
Query: 29 PPRLQCFEHPPDMKAGGGEAGVVV--HDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLL 86
PP QC ++PPD+ GG V HDL G+EAYVTGA HS R I+LA+D++GF+APLL
Sbjct: 23 PPHSQCLDNPPDLTTAGGGGEAGVVVHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLL 82
Query: 87 RQIADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKS 146
R+IADKVG AGYYVVVPDLFHG P T N TEWL +HSPVK AE AK IFA L EGKS
Sbjct: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKS 142
Query: 147 LVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPR 206
+VGVGGYCWGGKFAVEVAKTNEVEA+VISHP AVTADDMKEVKWPIEILG QNDTVTPPR
Sbjct: 143 IVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPR 202
Query: 207 LVYQYVHALRQRND-IDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHL 265
LVYQ+VHALRQR D ID++AK+F GV+HGFA RYN S+PF ++ +QALALMLDWF KHL
Sbjct: 203 LVYQFVHALRQRTDQIDYFAKVFQGVNHGFACRYNASNPFEVKKAEQALALMLDWFHKHL 262
Query: 266 K 266
K
Sbjct: 263 K 263
>Os11g0275500 Similar to Endo-1,3
Length = 276
Score = 357 bits (917), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 173/244 (70%), Positives = 208/244 (85%), Gaps = 10/244 (4%)
Query: 30 PRLQCFEHPPDMKAGG-GEAGVVVHDLAGYEAYVTG-AAHSGRAIVLASDVYGFQAPLLR 87
PRLQC E+PP++ A G GEAGVVV +L G+ AYVTG AAHSGRAIVLASDV+GF+APLLR
Sbjct: 36 PRLQCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLR 95
Query: 88 QIADKVGDAGYYVVVPDLF-----HGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRN 142
+IADKVG+AGYYVVVPD F +GDP ++N T+W+ +HSPVK AE +K IFA L+
Sbjct: 96 KIADKVGEAGYYVVVPDFFQRRPYNGDP---SINITKWIMAHSPVKAAEDSKPIFAALKR 152
Query: 143 EGKSLVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTV 202
EGK +VGVGGYCWGGK AVEVAKTNEV A+VISHP +VTADDMK+VK PIEILG +ND V
Sbjct: 153 EGKYVVGVGGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAV 212
Query: 203 TPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQ 262
TPPRLVYQ+V+ALRQR ++D++A+IFPGV+HGFA RYN S+PFA+ T +Q+LALMLDWF+
Sbjct: 213 TPPRLVYQFVNALRQRPEVDYFARIFPGVAHGFACRYNASNPFAVRTAEQSLALMLDWFE 272
Query: 263 KHLK 266
KHLK
Sbjct: 273 KHLK 276
>Os08g0238600 Similar to Endo-1,3
Length = 173
Score = 345 bits (885), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 164/168 (97%), Positives = 167/168 (99%)
Query: 99 YVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGVGGYCWGGK 158
YVVVPDLFHGDPATT+VNFTEWLESHSPVKEAEKAKSIFAFLRNEGKS+VGVGGYCWGGK
Sbjct: 6 YVVVPDLFHGDPATTSVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCWGGK 65
Query: 159 FAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQR 218
FAV VAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQR
Sbjct: 66 FAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQR 125
Query: 219 NDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
NDIDFYAKIFPGVSHGFAGRYNTSDPFA+ETGKQALALMLDWFQKHLK
Sbjct: 126 NDIDFYAKIFPGVSHGFAGRYNTSDPFAVETGKQALALMLDWFQKHLK 173
>Os08g0238500 Similar to Endo-1,3
Length = 279
Score = 340 bits (872), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 165/247 (66%), Positives = 197/247 (79%), Gaps = 11/247 (4%)
Query: 31 RLQCFEHPPDMKAGG-GEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQI 89
RL C ++PP++ A G GEAGVV+ DLAG+ AYVTG HSGRAI+LASD+YGF+APLLR
Sbjct: 33 RLPCLDNPPELTADGDGEAGVVIDDLAGFPAYVTGDVHSGRAIILASDIYGFEAPLLRDN 92
Query: 90 ADKVGDAGYYVVVPDLFHGDP--ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSL 147
ADKVG+AGYYVVVPD FHG P ++N T+W+ HSPVK AE AKSIFA L+ EGKS+
Sbjct: 93 ADKVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKSV 152
Query: 148 VGVGGYCWG--------GKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQN 199
+G+GGYCWG KFAVEVAKTNEVEA+VISHP V ADDMK VK PIEILGGQN
Sbjct: 153 IGIGGYCWGVSAQVQLAAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQN 212
Query: 200 DTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLD 259
D +TPP LV Q+V+ LRQ ++D++A+IFPGVSHGFA RYN S+ FA+ T +QALALMLD
Sbjct: 213 DPITPPSLVDQFVNVLRQTTEVDYFARIFPGVSHGFACRYNASNQFAVNTAEQALALMLD 272
Query: 260 WFQKHLK 266
WF+K+LK
Sbjct: 273 WFEKYLK 279
>Os11g0275000 Similar to Endo-1,3
Length = 372
Score = 325 bits (833), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 158/249 (63%), Positives = 191/249 (76%), Gaps = 11/249 (4%)
Query: 29 PPRLQCFEHPPDMKAGG-GEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLR 87
P RL C ++PP++ A G EAGVV+ DLAG+ AYVTG HSGRAI++ASD+YGF+APLLR
Sbjct: 31 PLRLPCLDNPPELTADGDSEAGVVIDDLAGFPAYVTGDVHSGRAIIVASDIYGFEAPLLR 90
Query: 88 QIADKVGDAGYYVVVPDLFHGDP--ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGK 145
ADKVG+AGYYVVVPD FHG P ++N T+W+ HSPVK AE AKSIFA L+ EGK
Sbjct: 91 DNADKVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGK 150
Query: 146 SLVGVGGYCWG--------GKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGG 197
S++G+GGYCWG KFAVEVAKTNEVEA+VISHP V ADDMK VK PIEILGG
Sbjct: 151 SVIGIGGYCWGVSAQVQLTAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGG 210
Query: 198 QNDTVTPPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALM 257
QND +TPP LV Q+V+ LRQ ++D++ +IFP VSHGFA RYN S+ FA++T +QALALM
Sbjct: 211 QNDHITPPSLVDQFVNVLRQTTEVDYFVRIFPDVSHGFACRYNASNQFAVKTAQQALALM 270
Query: 258 LDWFQKHLK 266
LD L+
Sbjct: 271 LDCTSSPLR 279
>Os05g0400200
Length = 290
Score = 280 bits (716), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 139/236 (58%), Positives = 170/236 (72%), Gaps = 3/236 (1%)
Query: 34 CFEHPPDM-KAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADK 92
C ++ P+M + GGEAG VVHD G E YVTG+ SGRAI+L SD YGF+AP LRQIADK
Sbjct: 47 CLDNSPNMTEKTGGEAGEVVHDYGGLECYVTGSRRSGRAIILVSDYYGFRAPKLRQIADK 106
Query: 93 VGDAGYYVVVPDLFHGDPATT--TVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGV 150
V +GYYVVVPDL +GDP T F W+ +HSP + AEK K + A L+ EG S VGV
Sbjct: 107 VAYSGYYVVVPDLLYGDPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVGV 166
Query: 151 GGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQ 210
GGYCWGGK AVE++KT E +AVVISHP VT DM EVK PIEILGG+ DT+TPP +V+Q
Sbjct: 167 GGYCWGGKVAVELSKTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTITPPLVVHQ 226
Query: 211 YVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
+ HAL Q N +D + K FP H FA RYN SDPFA++T ++A A M+ WF ++LK
Sbjct: 227 FEHALDQNNRVDHFVKTFPKAPHAFACRYNASDPFAVKTAEEARADMVQWFDEYLK 282
>Os05g0400100 Dienelactone hydrolase domain containing protein
Length = 290
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 169/243 (69%), Gaps = 5/243 (2%)
Query: 29 PPRLQCFEHPPDMKAG-GGEAGVVVHDLAGYEAYVTGAAHSG-RAIVLASDVYGFQAPLL 86
P + C E+PP+M GGEAG VVH G E Y TG+ SG RA++L SD YGF+AP L
Sbjct: 44 PQKHPCLENPPNMTENTGGEAGDVVHGYGGLECYATGSRRSGGRAVILVSDYYGFRAPKL 103
Query: 87 RQIADKVG-DAGYYVVVPDLFHGDPATT--TVNFTEWLESHSPVKEAEKAKSIFAFLRNE 143
R+IADKV G YVVVPDL GDP T F EW+++HSPV+ AEK K + A L+ +
Sbjct: 104 RKIADKVAYQLGCYVVVPDLLFGDPYTDDPARPFEEWIKTHSPVEAAEKTKPLIAALKKD 163
Query: 144 GKSLVGVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVT 203
G S VGVGGYCWGGK AVE++KT E +AVVISHP V DDMKEVK PIEILGG+ DT++
Sbjct: 164 GTSTVGVGGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTIS 223
Query: 204 PPRLVYQYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQK 263
PP+L++Q AL Q + KIFP HGFA RYN +DPFA++T ++A A M+ WF K
Sbjct: 224 PPQLIHQLEDALDQNKRVHHLVKIFPDAPHGFACRYNATDPFAVKTAEEARADMVKWFDK 283
Query: 264 HLK 266
+L+
Sbjct: 284 YLE 286
>Os08g0239100 Conserved hypothetical protein
Length = 208
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/192 (63%), Positives = 143/192 (74%), Gaps = 6/192 (3%)
Query: 29 PPRLQCFEHPPDMKAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQ 88
P QC ++PPD+ AGGGEAGVVVHDLAG+EAYVTGA HS +A++LASDV+GF+APLLR+
Sbjct: 20 PTHSQCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRK 79
Query: 89 IADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLV 148
IADKVG AGYYV VPD FHGDP T +N TEW HSP+K A ++ + K
Sbjct: 80 IADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ-- 137
Query: 149 GVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLV 208
Y KFAVEVAKTNEVEA+V +HP VT DD+KEVK PIEI+G QNDT+TPP+LV
Sbjct: 138 ---NYIQ-RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLV 193
Query: 209 YQYVHALRQRND 220
YQYV ALR R D
Sbjct: 194 YQYVQALRHRTD 205
>Os05g0399100 Similar to Endo-1,3
Length = 284
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 155/237 (65%), Gaps = 4/237 (1%)
Query: 33 QCFEHPPDMKAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADK 92
QC +PP + GGE G VV G +AYV GAA S A+VL SDV+GF+AP LR+IADK
Sbjct: 49 QCCANPPTLNPAGGE-GKVVESFGGIKAYVAGAAESKAAVVLISDVFGFEAPNLRKIADK 107
Query: 93 VGDAGYYVVVPDLFHGDP---ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVG 149
V +GY+VVVPD HGDP +T F W++ H P K E+AK I A L+ +G S +G
Sbjct: 108 VASSGYFVVVPDFLHGDPLVPESTEKPFQMWIKEHGPDKAFEEAKPIIAALKEKGVSSIG 167
Query: 150 VGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVY 209
GYCWG K VE+ K +E++A V+ HP VT DDMKEVK PI ILG + D ++PP +V
Sbjct: 168 AVGYCWGAKVVVELVKAHEIQAAVMCHPSFVTVDDMKEVKCPIAILGAEIDRMSPPEVVK 227
Query: 210 QYVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
Q+ L ++ I + KIFPGV HG+ RY D A+++ ++ALA M+DWF K+LK
Sbjct: 228 QFEQVLSSKSGIGHFVKIFPGVEHGWTVRYKNDDAAAVKSAEEALADMIDWFNKNLK 284
>Os05g0399200 Similar to Endo-1,3
Length = 239
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 154/236 (65%), Gaps = 3/236 (1%)
Query: 33 QCFEHPPDMKAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQIADK 92
QC+E+PP + GG G VV D G +AYV G+A S A+VL SD +GF+AP LR+IADK
Sbjct: 5 QCWENPPALDPAGG-GGEVVGDFGGQKAYVAGSAGSKAAVVLISDAFGFEAPNLRKIADK 63
Query: 93 VGDAGYYVVVPDLFHGDP--ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLVGV 150
V GY+VVVPD HGDP N WL+SH+P + E+AK + A L+ +G S +G
Sbjct: 64 VALFGYFVVVPDFLHGDPYQPDNPNNPGIWLQSHNPKEAFEEAKPVIAALKEKGASFIGA 123
Query: 151 GGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQ 210
GYCWG K VE+ K +E++A V+ HP + DD+KEVK PI ILG + D +PP L+ Q
Sbjct: 124 AGYCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPELLKQ 183
Query: 211 YVHALRQRNDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
+ L +I + KIFPGV HG+A RYN D A+++ ++AL M+DWF+K+LK
Sbjct: 184 FEQILSPNPEIAHFVKIFPGVEHGWAVRYNHDDAAAVKSAEEALEDMMDWFKKYLK 239
>Os08g0283600
Length = 290
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 87 RQIADKVGDAGYYVVVPDLFHGDP--ATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEG 144
R+IADKVG+AGYYVVVPD FHG P ++N T+W+ +HSPVK AE AK IFA L+ E
Sbjct: 87 RKIADKVGEAGYYVVVPDFFHGRPYNGEPSINITQWIMAHSPVKAAEDAKLIFAALKRER 146
Query: 145 KSLVGVGGYCW 155
KS+V VGGYCW
Sbjct: 147 KSIVEVGGYCW 157
>Os08g0236200 Reverse transcriptase, RNA-dependent DNA polymerase family protein
Length = 624
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 43/48 (89%)
Query: 219 NDIDFYAKIFPGVSHGFAGRYNTSDPFALETGKQALALMLDWFQKHLK 266
N +D++A+IFPGV+HGFA RYN S+PFA+ T +Q+LALMLDWF+KHLK
Sbjct: 577 NVVDYFARIFPGVAHGFACRYNGSNPFAVRTAEQSLALMLDWFEKHLK 624
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,439,252
Number of extensions: 392174
Number of successful extensions: 1045
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 14
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)