BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0200000 Os11g0200000|AK064282
(456 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0200000 Histone deacetylase family protein 864 0.0
Os11g0201400 Histone deacetylase family protein 821 0.0
Os01g0586400 473 e-133
Os02g0214900 Similar to Histone deacetylase 389 e-108
Os06g0583400 Similar to Histone deacetylase (Fragment) 385 e-107
Os08g0344100 Similar to Histone deacetylase 378 e-105
Os04g0409600 Similar to Histone deacetylase 196 3e-50
Os01g0223100 187 2e-47
Os03g0558300 154 2e-37
AK120027 122 7e-28
Os05g0440100 Histone deacetylase superfamily protein 117 1e-26
Os05g0440300 Similar to S1 self-incompatibility locus-linke... 107 1e-23
Os07g0602200 Similar to HDA1 103 4e-22
Os07g0164100 Histone deacetylase superfamily protein 99 6e-21
AK110273 96 7e-20
Os02g0215200 Similar to Histone deacetylase (Fragment) 92 5e-19
Os06g0571100 Similar to HDA2 (Fragment) 87 4e-17
Os12g0182700 Histone deacetylase superfamily protein 85 1e-16
Os05g0203925 77 3e-14
>Os11g0200000 Histone deacetylase family protein
Length = 456
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/456 (96%), Positives = 441/456 (96%)
Query: 1 MATGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGD 60
MATGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGD
Sbjct: 1 MATGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGD 60
Query: 61 MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFD 120
MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFD
Sbjct: 61 MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFD 120
Query: 121 RLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL 180
RLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL
Sbjct: 121 RLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL 180
Query: 181 GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGA 240
GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGA
Sbjct: 181 GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGA 240
Query: 241 GEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSV 300
GEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSV
Sbjct: 241 GEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSV 300
Query: 301 RGHAECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYE 360
RGHAECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYE
Sbjct: 301 RGHAECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYE 360
Query: 361 LMYKNQGNKLHYXXXXXXXXXXXXXXXEVTKGKVLEHLSQVKRAPSVQFQERRGGDNAAG 420
LMYKNQGNKLHY EVTKGKVLEHLSQVKRAPSVQFQERRGGDNAAG
Sbjct: 361 LMYKNQGNKLHYKTSTATAARKRSSSTEVTKGKVLEHLSQVKRAPSVQFQERRGGDNAAG 420
Query: 421 VGLYYERPPSLEDDEPAQRLHRLCFPGLTKRIRLND 456
VGLYYERPPSLEDDEPAQRLHRLCFPGLTKRIRLND
Sbjct: 421 VGLYYERPPSLEDDEPAQRLHRLCFPGLTKRIRLND 456
>Os11g0201400 Histone deacetylase family protein
Length = 461
Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/454 (90%), Positives = 419/454 (92%), Gaps = 12/454 (2%)
Query: 1 MATGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGD 60
MATGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGD
Sbjct: 1 MATGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGD 60
Query: 61 MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFD 120
M RLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGG DDCPAFD
Sbjct: 61 MSRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGKDDCPAFD 120
Query: 121 RLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL 180
RLWKYCRGYAGGS AAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL
Sbjct: 121 RLWKYCRGYAGGSLAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL 180
Query: 181 GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGA 240
GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHK+FFPGSGAINEIG GA
Sbjct: 181 GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKNFFPGSGAINEIGAGA 240
Query: 241 GEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSV 300
GEHYSVNVPLDAGVR D AMEVFQPEAIVLQCGADSLSGDRLGGMELSV
Sbjct: 241 GEHYSVNVPLDAGVRAD------------AMEVFQPEAIVLQCGADSLSGDRLGGMELSV 288
Query: 301 RGHAECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYE 360
RGHAECV FLRGFNLPLLLVGGGGYTINHVAS WCYETAVAVGKER+LPDDIEIPSHGYE
Sbjct: 289 RGHAECVGFLRGFNLPLLLVGGGGYTINHVASTWCYETAVAVGKERELPDDIEIPSHGYE 348
Query: 361 LMYKNQGNKLHYXXXXXXXXXXXXXXXEVTKGKVLEHLSQVKRAPSVQFQERRGGDNAAG 420
LMYKNQG+KLHY EVTKGKVLEHLSQ++RAPSVQFQERRGG+NAAG
Sbjct: 349 LMYKNQGDKLHYQKSTATAARKRSSSAEVTKGKVLEHLSQIERAPSVQFQERRGGNNAAG 408
Query: 421 VGLYYERPPSLEDDEPAQRLHRLCFPGLTKRIRL 454
V LYY+RPPSLEDDEPAQRLHRLCFPGLTKRI+L
Sbjct: 409 VELYYDRPPSLEDDEPAQRLHRLCFPGLTKRIKL 442
>Os01g0586400
Length = 481
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 263/456 (57%), Positives = 317/456 (69%), Gaps = 25/456 (5%)
Query: 4 GGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGDMRR 63
GGNSLPSPSC DDKKRRVCYYYDPGI+ + + + HVMVP RV MAH+LV YGMLGDMRR
Sbjct: 5 GGNSLPSPSCGDDKKRRVCYYYDPGISTVDYGEGHVMVPHRVTMAHNLVAAYGMLGDMRR 64
Query: 64 LRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAE-------DDHGIGGDDDC 116
LRT PAT AE+ FH Y+ LL+DLTP+ D + A + G G D
Sbjct: 65 LRTAPATAAELADFHDEGYLALLQDLTPDGCGGDDGVGDMARARGIYAVEGKGGGRGVDN 124
Query: 117 PAFDRLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAI 176
P FDRLW YC Y+GGS AAAR L G +DIAINWSGGMHHA A GFCYVNDIVLAI
Sbjct: 125 PVFDRLWDYCLRYSGGSLAAARTLGSGTADIAINWSGGMHHACRGGARGFCYVNDIVLAI 184
Query: 177 NELLGTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEI 236
ELL FRRV+YVDID HHGDGVQ AF SNRVMT+SFH++G FFPGSGA+ ++
Sbjct: 185 RELLAHFRRVLYVDIDVHHGDGVQAAFEASNRVMTVSFHQHGG-----GFFPGSGAVADV 239
Query: 237 GD-GAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGG 295
G G G + ++NVP+ G+ D+ YH LF+PI+ + MEVFQPEA+VLQCGADSL+GDRLG
Sbjct: 240 GKKGPGRYCALNVPVSVGIGDEEYHRLFEPIMARVMEVFQPEAVVLQCGADSLAGDRLGE 299
Query: 296 MELSVRGHAECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIP 355
+ L+ RGHA+CVSF+R FNLPLLL+GGGGYTINHVAS WC ETAVA+GKE +P+D IP
Sbjct: 300 LNLTTRGHAQCVSFIRSFNLPLLLLGGGGYTINHVASCWCNETAVAIGKE--IPND--IP 355
Query: 356 SHGYELMYKNQGNKLHYXXXXXXXXXXXXXXXEV--TKGKVLEHLSQVK--RAPSVQFQE 411
HG+++ YKNQ KLHY + + +E+LS++K A SVQF+E
Sbjct: 356 KHGFDVFYKNQEYKLHYKLETKHLHRNRNTANSIDGIRMAAMENLSKLKLEAAASVQFEE 415
Query: 412 RRGGDNAAGVG-LYYE-RPPSLEDDEPAQRLHRLCF 445
RR + VG LYY+ R E++ P RLHR +
Sbjct: 416 RR--HRSINVGDLYYDPREQEEEEESPTARLHRKLY 449
>Os02g0214900 Similar to Histone deacetylase
Length = 510
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/415 (51%), Positives = 270/415 (65%), Gaps = 28/415 (6%)
Query: 4 GGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLG--DM 61
GGNSL S SC D +KRRVCY+YDP + + + H M P RV M H+L+ YG+L M
Sbjct: 9 GGNSLASASCGDAQKRRVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHYGLLAPAKM 68
Query: 62 RRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDA-ALRQKAEDDHGIGGDDDCPAFD 120
LR PA ++ RFHS +YV LR +TPE+ ALR+ IG DCP FD
Sbjct: 69 EVLRPLPARGIDLCRFHSDDYVAFLRAVTPETQLGQVRALRR-----FNIG--PDCPVFD 121
Query: 121 RLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELL 180
L+ YC+ YAG S AA L G DIAINWSGG+HHA +A+GFCYVNDIVLAI ELL
Sbjct: 122 GLYAYCQTYAGASVGAAVKLNHGTHDIAINWSGGLHHAKKSEASGFCYVNDIVLAILELL 181
Query: 181 GTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGA 240
RV+Y+DID HHGDGV+ AF +NRVMT+SFH++G D+FPG+G I +IG
Sbjct: 182 KLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFG------DYFPGTGDIRDIGYSE 235
Query: 241 GEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSV 300
G++Y +NVPLD G+ DD Y ++FKPI+ K ME+++P A+VLQCGADSLSGDRLG LS
Sbjct: 236 GKYYCLNVPLDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSG 295
Query: 301 RGHAECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKE--RKLPDDIEIPSHG 358
+GHAECV F+R FN+PLLL+GGGGYTI +VA WCYET VA+G+E KLP
Sbjct: 296 KGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGEELQEKLP--------- 346
Query: 359 YELMYKNQGNKLH-YXXXXXXXXXXXXXXXEVTKGKVLEHLSQVKRAPSVQFQER 412
Y Y+ G + Y E K +L++LS+++ APSVQFQER
Sbjct: 347 YNEYYEYFGPEYSLYVAASNMENRNTNKQLEEIKCNILDNLSKLQHAPSVQFQER 401
>Os06g0583400 Similar to Histone deacetylase (Fragment)
Length = 518
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/409 (51%), Positives = 279/409 (68%), Gaps = 20/409 (4%)
Query: 4 GGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGDMRR 63
GGNSLP+ + AD KRRVCY+YD + + + H M P R+ M H+L+ YG+L M+
Sbjct: 8 GGNSLPT-AGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQV 66
Query: 64 LRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFDRLW 123
L+ PA + ++ RFH+ +YV LR +TPE+ + + +A +G +DCP FD L+
Sbjct: 67 LKPHPARDRDLCRFHADDYVAFLRSVTPETQQD----QIRALKRFNVG--EDCPVFDGLY 120
Query: 124 KYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELLGTF 183
+C+ YAGGS A L G DIAINW+GG+HHA C+A+GFCYVNDIVLAI ELL
Sbjct: 121 SFCQTYAGGSVGGAVKLNHG-HDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYH 179
Query: 184 RRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGAGEH 243
+RV+YVDID HHGDGV+ AF ++RVMT+SFH++G D+FPG+G I +IG G++
Sbjct: 180 QRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG------DYFPGTGDIRDIGHSKGKY 233
Query: 244 YSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRGH 303
YS+NVPLD G+ D+ Y +LFKPI+GK MEVF+P A+VLQCGADSLSGDRLG LS+RGH
Sbjct: 234 YSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGH 293
Query: 304 AECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYELMY 363
AECV F+R FN+PLLL+GGGGYTI +VA WCYET VA+G E L D ++P + Y Y
Sbjct: 294 AECVRFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHE--LTD--KMPPNEY-FEY 348
Query: 364 KNQGNKLHYXXXXXXXXXXXXXXXEVTKGKVLEHLSQVKRAPSVQFQER 412
LH ++ + ++L++LS+++ APSVQFQER
Sbjct: 349 FGPDYTLHVAPSNMENKNTRQQLDDI-RSRLLDNLSKLRHAPSVQFQER 396
>Os08g0344100 Similar to Histone deacetylase
Length = 458
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/409 (49%), Positives = 266/409 (65%), Gaps = 19/409 (4%)
Query: 5 GNSLPSPSCADD-KKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGDMRR 63
G SL S + +D ++RRV Y+Y+P I + H M P R+ MAHSLV YG+ +
Sbjct: 7 GASLASAAGGEDGRRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGLHRLLEL 66
Query: 64 LRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFDRLW 123
R PA++A+IRRFHS +YV L T N A L +A +G +DCP FD L+
Sbjct: 67 SRPYPASDADIRRFHSDDYVAFLASATG----NPALLDARAVKRFNVG--EDCPVFDGLF 120
Query: 124 KYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINELLGTF 183
+C+ AGGS AA L G +DI +NW+GG+HHA +A+GFCYVNDIVLAI ELL
Sbjct: 121 PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAILELLKFH 180
Query: 184 RRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGAGEH 243
RRV+YVDID HHGDGV+ AF +NRVMT SFH+YG DFFPG+G I ++G G G+H
Sbjct: 181 RRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYG------DFFPGTGHITDVGAGEGKH 234
Query: 244 YSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRGH 303
Y++NVPL G+ DD + LF+ I+ K MEV+QP+ +VLQCGADSL+GDRLG LSV+GH
Sbjct: 235 YALNVPLSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGH 294
Query: 304 AECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYELMY 363
A+C+ +LR FN+P++++GGGGYTI +VA WCYETAVAVG E PD+ ++P + Y +
Sbjct: 295 ADCLRYLRSFNIPMMVLGGGGYTIRNVARCWCYETAVAVGVE---PDN-KLPYNDYYEYF 350
Query: 364 KNQGNKLHYXXXXXXXXXXXXXXXEVTKGKVLEHLSQVKRAPSVQFQER 412
N LH E K +L+HLS+++ PS QF +R
Sbjct: 351 GPDYN-LH-IQPRSVENLNSTKDLENIKSMILDHLSKIEHVPSTQFHDR 397
>Os04g0409600 Similar to Histone deacetylase
Length = 309
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 141/227 (62%), Gaps = 11/227 (4%)
Query: 185 RVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINEIGDGAGEHY 244
+V+Y+DID HHGDGV+ AF ++RVMT+SFH+YG FFPG+G I +IG+ G++Y
Sbjct: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDF-----FFPGTGDIKDIGEREGKYY 98
Query: 245 SVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRGHA 304
++N+PL G+ D + LFK ++ K +E + P AIVLQCGADSL+ DRLG LS+ GHA
Sbjct: 99 AINIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHA 158
Query: 305 ECVSFLRGFNLPLLLVGGGGYTINHVASAWCYETAVAVGKERKLPDDIEIPSHGYELMYK 364
ECV F++ FN+PLL+ GGGGYT +VA W ET V + E LP+ EIP + Y + Y
Sbjct: 159 ECVKFVKKFNIPLLVTGGGGYTKENVARCWAVETGVLLDTE--LPN--EIPDNEY-IKYF 213
Query: 365 NQGNKLHYXXXXXXXXXXXXXXXEVTKGKVLEHLSQVKRAPSVQFQE 411
L + K +V+E L ++ AP VQ QE
Sbjct: 214 APDYTLKVSNVNMDNLNSKSYLSSI-KVQVMESLRAIQHAPGVQMQE 259
>Os01g0223100
Length = 131
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/109 (84%), Positives = 98/109 (89%), Gaps = 3/109 (2%)
Query: 40 MVPARVAMAHSLVGVYGMLGDMRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAA 99
MVPARVA+AHSLV VYGMLGDMRRLRTRP TEAEIRRFH PEYV+L+R+LTP+SY ND
Sbjct: 1 MVPARVAIAHSLVSVYGMLGDMRRLRTRPTTEAEIRRFHLPEYVNLIRNLTPKSYTNDVV 60
Query: 100 LRQKAEDDHGIG--GDD-DCPAFDRLWKYCRGYAGGSFAAARALVDGAS 145
LRQKAEDDHGIG GDD DCPAFDRLWKYCRGYAGGS AAAR LV+GAS
Sbjct: 61 LRQKAEDDHGIGLLGDDNDCPAFDRLWKYCRGYAGGSLAAARTLVNGAS 109
>Os03g0558300
Length = 96
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/124 (67%), Positives = 84/124 (67%), Gaps = 31/124 (25%)
Query: 47 MAHSLVGVYGMLGDMRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAED 106
MAHSLVG YGMLGDMRRLR DL PESY NDAALRQK ED
Sbjct: 1 MAHSLVGFYGMLGDMRRLR----------------------DLIPESYVNDAALRQKGED 38
Query: 107 DHGIG---GDDDCPAFDRLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKA 163
DHGIG GDDDCPAFDRLWKYCR YA A LVDGASDIAINWSG MHHASACKA
Sbjct: 39 DHGIGLLSGDDDCPAFDRLWKYCRAYA------ACVLVDGASDIAINWSGNMHHASACKA 92
Query: 164 TGFC 167
GFC
Sbjct: 93 NGFC 96
>AK120027
Length = 266
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 94/147 (63%), Gaps = 12/147 (8%)
Query: 269 KAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRGHAECVSFLRGFNLPLLLVGGGGYTIN 328
K ME+++P A+VLQCGADSLSGDRLG LS +GHAECV F+R FN+PLLL+GGGGYTI
Sbjct: 20 KVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSFNVPLLLLGGGGYTIR 79
Query: 329 HVASAWCYETAVAVGKE--RKLPDDIEIPSHGYELMYKNQGNKLH-YXXXXXXXXXXXXX 385
+VA WCYET VA+G+E KLP Y Y+ G + Y
Sbjct: 80 NVARCWCYETGVALGEELQEKLP---------YNEYYEYFGPEYSLYVAASNMENRNTNK 130
Query: 386 XXEVTKGKVLEHLSQVKRAPSVQFQER 412
E K +L++LS+++ APSVQFQER
Sbjct: 131 QLEEIKCNILDNLSKLQHAPSVQFQER 157
>Os05g0440100 Histone deacetylase superfamily protein
Length = 392
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 142/292 (48%), Gaps = 48/292 (16%)
Query: 67 RPATEAEIRRFHSPEYVDLL--------RDLTPESYFNDAALRQKAEDDHGIGGDDDCPA 118
RPA AE+ FHS EY++ L + L ++ N +
Sbjct: 85 RPAHAAELLSFHSAEYIEELVQANAVGAKKLCEGTFLNPGS------------------- 125
Query: 119 FDRLWKYCRGYAGGSFAAARALVDGASDIA---INWSGGMHHASACKATGFCYVNDIVLA 175
W AG + +A + ++DG + IA + G HHA +A G+C++N+ LA
Sbjct: 126 ----WGAALLAAGTTLSAMKHILDGHAKIAYALVRPPG--HHAQPDRADGYCFLNNAGLA 179
Query: 176 INELLGTFRR-VIYVDIDAHHGDGVQNAFLDSNRVMTLSFH-RYGKITPHKDFFPGSGAI 233
+ L + RR V VDID H+G+G F ++ V+T+S H ++G P P SG++
Sbjct: 180 VKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSH---PQSGSV 236
Query: 234 NEIGDGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRL 293
+EIG+G G Y++N+PL G D Y +V A+E F+PE +V G DS + D
Sbjct: 237 DEIGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPN 296
Query: 294 GGMELSVRGHAECVSFLRGF-----NLPLLLVGGGGYTINHVASAWCYETAV 340
G L++ G+ + +RG N +L+V GGY I++ SA+C +
Sbjct: 297 GRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHISY--SAYCLHATL 346
>Os05g0440300 Similar to S1 self-incompatibility locus-linked G221 protein
(Fragment)
Length = 395
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 17/223 (7%)
Query: 123 WKYCRGYAGGSFAAARALVDGASDIA---INWSGGMHHASACKATGFCYVNDIVLAINEL 179
W AG + +A + ++DG + IA + G HHA +A G+C++N+ LA+
Sbjct: 129 WDAALLAAGTTLSAMKHILDGHAKIAYALVRPPG--HHAQPDRADGYCFLNNAGLAVKLA 186
Query: 180 LGT-FRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFH-RYGKITPHKDFFPGSGAINEIG 237
L + RRV VDID H+G+G F ++ V+T+S H ++G P P SG ++E G
Sbjct: 187 LDSGRRRVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSH---PQSGLVDETG 243
Query: 238 DGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGME 297
+G G Y++N+PL G D Y +V A+E F+PE +V G DS + D G
Sbjct: 244 EGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQC 303
Query: 298 LSVRGHAECVSFLRGF-----NLPLLLVGGGGYTINHVASAWC 335
L++ G+ + +RG N +L+V GGY I + SA+C
Sbjct: 304 LTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHITY--SAYC 344
>Os07g0602200 Similar to HDA1
Length = 695
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 152/332 (45%), Gaps = 42/332 (12%)
Query: 19 RRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGDMRRLRTRPATEAEIRRFH 78
R+C + P ++H P R+ + G+ ++ + A + I H
Sbjct: 19 ERMCAHATPD------GEEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVH 72
Query: 79 SPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFDRLWKYCRGYAGGSFAAAR 138
S ++ L+R ++ + Y D+ + A + I + +G + +F AA
Sbjct: 73 SQNHIKLMRSISSKEY--DSRRNKIARKFNSI-------------YFNKGSSESAFLAAG 117
Query: 139 ALVDGASDIAI-NWSGGM-------HHASACKATGFCYVNDIVLAINELLGT-----FRR 185
++++ A +A S + HHA +A GFC N++ +A + LL ++
Sbjct: 118 SVIEVAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKK 177
Query: 186 VIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINE--IGDGAGEH 243
++ VD D HHG+G Q F RV+ S HR+ + F+P G + IG+G G+
Sbjct: 178 ILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFD----YGSFYPAEGDASYCFIGEGDGKG 233
Query: 244 YSVNVPLDAGVRDDV-YHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRG 302
Y++NVP + G D Y + ++ E F P+ +++ G D+ GD LGG ++ G
Sbjct: 234 YNINVPWEHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNG 293
Query: 303 HAECVSFLRGFNL-PLLLVGGGGYTINHVASA 333
+A ++ L GF +++ GGY + +A++
Sbjct: 294 YALLLTKLLGFAQGRIVMALEGGYNLRSIANS 325
>Os07g0164100 Histone deacetylase superfamily protein
Length = 623
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 11/206 (5%)
Query: 156 HHASACKATGFC-YVNDIVLAINELLGTFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSF 214
HHA +A GFC + N V A+ ++V+ VD D HHG+G Q F N V+ +S
Sbjct: 330 HHAGVKQAMGFCLHNNAAVAALAAQRAGAKKVLIVDWDVHHGNGTQEIFDGDNSVLYISL 389
Query: 215 HRYGKITPHKD--FFPGSGAINEIGDGAGEHYSVNVPLD-AGVRDDVYHTLFKPIVGKAM 271
HR H+D F+PG+GA NE+G G+ +SVN+P GV D+ Y FK +V
Sbjct: 390 HR------HEDGSFYPGTGAANEVGVMDGQGFSVNIPWSRGGVGDNDYIFAFKHVVLPIA 443
Query: 272 EVFQPEAIVLQCGADSLSGDRLGGMELSVRGHAECVSFLRGFNL-PLLLVGGGGYTINHV 330
F P+ ++ G D+ GD LG +++ G++ S L + LL++ GGY + +
Sbjct: 444 AEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMASMLTACSQGKLLVILEGGYNLRSI 503
Query: 331 ASAWCYETAVAVGKERKLPDDIEIPS 356
+S+ V +G D PS
Sbjct: 504 SSSATEVVKVLLGDSPVYDTDATEPS 529
>AK110273
Length = 744
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 156 HHASACKATGFCYVNDIVLAINELLGTF-RRVIYVDIDAHHGDGVQNAFLDSNRVMTLSF 214
HHA + A GFC+ N+ +A RV+ +D D HHG+G Q+ F V+ +S
Sbjct: 354 HHAESNTAMGFCFFNNAAVAARAAQAAGAERVLILDWDVHHGNGTQHIFEADPSVLYMSL 413
Query: 215 HRYGKITPHKDFFPGSGAINEIGDGAGEHYSVNVPLDAG-VRDDVYHTLFKPIVGKAMEV 273
HRY + +F+PG+G +E+G G G Y+VNVP DAG + + Y + ++
Sbjct: 414 HRYDR----GNFYPGTGGADEVGHGRGAGYTVNVPWDAGNIGNGDYMAAMEQVILPIARE 469
Query: 274 FQPEAIVLQCGADSLSGDRLGGMELSVRGHAECVSFLRGFNLPL---LLVGGGGYTI 327
F P I++ G D+ GD +GG L+ EC + LP+ +L+ GGY +
Sbjct: 470 FAPNLIIISAGFDAADGDPIGGCCLT----PECFGNMTAELLPIAPTVLLLEGGYNL 522
>Os02g0215200 Similar to Histone deacetylase (Fragment)
Length = 127
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 3 TGGNSLPSPSCADDKKRRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGML--GD 60
GGNSL S SC D +KRRVCY+YDP + + + H M P RV M H+L+ YG+L
Sbjct: 8 AGGNSLASASCGDAQKRRVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHYGLLAPAK 67
Query: 61 MRRLRTRPATEAEIRRFHSPEYVDLLRDLTPESYFN 96
M+ LR PA + ++ RFHS +YV LR +TPE+ F+
Sbjct: 68 MQVLRPLPARDRDLCRFHSDDYVAFLRAVTPETQFD 103
>Os06g0571100 Similar to HDA2 (Fragment)
Length = 352
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 120/285 (42%), Gaps = 49/285 (17%)
Query: 56 GMLGDMRRLRTRPATEAEIRRFHSPEYVDLLR---------DLTPESYFNDAALRQKAED 106
G L R + AT+ ++ HS Y++ L+ +L P ++ + ++QK
Sbjct: 74 GHLEKNRVVEPLEATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKL-- 131
Query: 107 DHGIGGDDDCPAFDRLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGF 166
L+ + + G +A AL G AIN GG HH SA + GF
Sbjct: 132 ---------------LYPFRKQVGGSILSAKLALERGW---AINVGGGFHHCSAEQGGGF 173
Query: 167 CYVNDIVLAINELLG--TFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHK 224
C DI L I RV+ +D+DAH G+G + F + RV TL + G I P+
Sbjct: 174 CAYADISLCIQFAFVRLNISRVMIIDLDAHQGNGHEKDFANDGRVYTLDMYNAG-IYPYD 232
Query: 225 DFFPGSGAINEIGDGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCG 284
A + V L +G + + Y + A FQP+ IV G
Sbjct: 233 HV-------------AKRYIDQKVELVSGTKTEDYLDQLDKALKVAESRFQPQLIVYNAG 279
Query: 285 ADSLSGDRLGGMELSVRG----HAECVSFLRGFNLPLLLVGGGGY 325
D L GD LG +++S +G + F + ++PLL++ GGY
Sbjct: 280 TDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIPLLMLTSGGY 324
>Os12g0182700 Histone deacetylase superfamily protein
Length = 443
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 19/214 (8%)
Query: 156 HHASACKATGFCYVNDIVLAINELLGT--FRRVIYVDIDAHHGDGVQNAFLDSNRVMTLS 213
HHA GFC +I +A +RV+ +D D HHG+G +AF + + LS
Sbjct: 221 HHAVPEGPMGFCVFGNIAVAARYAQNQHGLKRVMIIDFDVHHGNGTCDAFYEDPDIFFLS 280
Query: 214 FHRYGKITPHKDFFPGSGAINEIGDGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEV 273
H+ G +PG+G I+++G G GE ++N+PL G D F ++ A +
Sbjct: 281 THQLGS-------YPGTGKIHQVGQGNGEGTTLNLPLPGGSGDYAMRCAFDEVIAPAAQR 333
Query: 274 FQPEAIVLQCGADSLSGDRLGGMELSVRGHAECVSFLRGFNLPLLLVGG-------GGYT 326
F+P+ I++ G D+ + D L G++ + + +R + L GG GGY
Sbjct: 334 FKPDIILVSAGYDAHALDPLAGLQFTTGTFYMLAARIR--EVAAELCGGRCVFFLEGGYN 391
Query: 327 INHVASAWCYETAVAVGKERKLPDDIEIPSHGYE 360
+ ++S+ +T A E L + P+ YE
Sbjct: 392 LESLSSS-VADTFRAFLGEPSLAARFDDPAMLYE 424
>Os05g0203925
Length = 148
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 36/44 (81%), Gaps = 3/44 (6%)
Query: 85 LLRDLTPESYFNDAALRQKAEDDHGI---GGDDDCPAFDRLWKY 125
LL DLTPESY ND ALRQKAEDDHGI GGDDD P FDRLWKY
Sbjct: 55 LLHDLTPESYVNDTALRQKAEDDHGIGLLGGDDDLPTFDRLWKY 98
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,375,772
Number of extensions: 874001
Number of successful extensions: 1685
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 1642
Number of HSP's successfully gapped: 19
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)