Os12g0182700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone deacetylase superfamily protein.
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Os12g0182700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone deacetylase superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.26 | 0.34 | 12.1 | -0.233 | 0.465 | -0.718 | 0.98 | 0.33 | -0.435 | 3.55 | 79.09 | 888 | -- | -- |
| 52.44 | 0.337 | 12.1 | -0.208 | 0.468 | -0.721 | 0.947 | -- | -0.431 | 3.63 | 78.76 | 896 | -- | -- |
| 54.93 | 0.345 | 12.1 | -0.213 | 0.445 | -0.715 | -- | 0.0249 | -0.437 | 2.83 | 79.26 | 1004 | -- | -- |
| 54.91 | 0.345 | 12.1 | -0.212 | 0.426 | -0.718 | -- | -- | -0.435 | 2.75 | 79.16 | 1016 | -- | -- |
| 64.06 | 0.373 | 12.1 | -0.155 | -- | -0.993 | -- | -0.0352 | -0.442 | -- | 79.07 | 1040 | -- | -- |
| 60.51 | 0.365 | 12.1 | -0.251 | 0.584 | -- | 0.666 | -- | -0.352 | 1.77 | -- | -- | -- | -- |
| 62.21 | 0.369 | 12.1 | -0.271 | 0.583 | -- | -- | -- | -0.355 | 1.6 | -- | -- | -- | -- |
| 64.01 | 0.373 | 12.1 | -0.192 | -- | -1.01 | -- | -- | -0.449 | -- | 77.15 | 1048 | -- | -- |
| 56.02 | 0.349 | 12.1 | -- | 0.416 | -0.742 | -- | -- | -0.422 | 2.75 | 81 | 1016 | -- | -- |
| 82.96 | 0.426 | 12.1 | -0.248 | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
| 64.15 | 0.375 | 12.1 | -- | 0.578 | -- | -- | -- | -0.325 | 1.59 | -- | -- | -- | -- |
| 64.81 | 0.375 | 12.1 | -- | -- | -1.01 | -- | -- | -0.443 | -- | 80 | 1040 | -- | -- |
| 84.58 | 0.429 | 12.1 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.24 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 3 | 51.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 8 | 51.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 13 | 52.02 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 14 | 52.03 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 55 | 52.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 64 | 52.30 | humidity | 80 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 69 | 52.31 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 107 | 52.37 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 109 | 52.37 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 113 | 52.38 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 129 | 52.39 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 149 | 52.40 | humidity | 70 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 170 | 52.42 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 178 | 52.43 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 196 | 52.45 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 204 | 52.48 | atmosphere | 995 | 14400 | > th | dose independent | sin | 11 | NA |
| 206 | 52.48 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 212 | 52.49 | atmosphere | 995 | 14400 | < th | dose independent | sin | 11 | NA |
| 258 | 52.52 | atmosphere | 1000 | 4320 | > th | dose independent | sin | 15 | NA |
| 259 | 52.52 | atmosphere | 1000 | 4320 | < th | dose independent | sin | 15 | NA |
| 321 | 52.59 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 336 | 52.59 | humidity | 80 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 348 | 52.61 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 379 | 52.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 478 | 52.73 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 483 | 52.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 490 | 52.73 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 12 |
| 504 | 52.74 | humidity | 80 | 720 | > th | dose dependent | sin | 13 | NA |
| 505 | 52.74 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 15 | NA |
| 653 | 52.83 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 657 | 52.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 667 | 52.84 | atmosphere | 995 | 14400 | < th | dose dependent | no | NA | NA |
| 698 | 52.84 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 24 | 19 |
| 783 | 52.86 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 809 | 52.88 | atmosphere | 995 | 14400 | < th | dose independent | no | NA | NA |
| 812 | 52.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 859 | 52.88 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 881 | 52.88 | humidity | 80 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 934 | 52.90 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 975 | 52.91 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 20 | 23 |
| 976 | 52.91 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 985 | 52.92 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |