Os06g0583400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone deacetylase (Fragment).
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Os06g0583400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone deacetylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.11 | 0.176 | 12 | 0.325 | 0.361 | 0.29 | 0.149 | 0.895 | 0.135 | 16.9 | 21.5 | 1585 | -- | -- |
| 15.75 | 0.186 | 12 | 0.138 | 0.339 | 0.173 | 0.186 | -- | 0.101 | 17.5 | 21.78 | 1958 | -- | -- |
| 14.16 | 0.175 | 12 | 0.325 | 0.362 | 0.291 | -- | 0.897 | 0.135 | 16.9 | 21.46 | 1598 | -- | -- |
| 15.37 | 0.184 | 12 | 0.125 | 0.346 | 0.187 | -- | -- | 0.0905 | 17.6 | 22.4 | 216 | -- | -- |
| 20.94 | 0.213 | 12 | 0.27 | -- | 0.295 | -- | 0.787 | 0.118 | -- | 21.42 | 1745 | -- | -- |
| 17.36 | 0.195 | 12 | 0.187 | 0.361 | -- | 0.179 | -- | 0.147 | 16.9 | -- | -- | -- | -- |
| 17.44 | 0.196 | 12 | 0.188 | 0.362 | -- | -- | -- | 0.148 | 16.9 | -- | -- | -- | -- |
| 17.55 | 0.195 | 12 | 0.0886 | -- | 0.306 | -- | -- | -0.00812 | -- | 24.82 | 266 | -- | -- |
| 15.76 | 0.186 | 12 | -- | 0.343 | 0.205 | -- | -- | 0.0718 | 17.7 | 22.38 | 221 | -- | -- |
| 24.36 | 0.231 | 12 | 0.175 | -- | -- | -- | -- | 0.139 | -- | -- | -- | -- | -- |
| 18.37 | 0.201 | 12 | -- | 0.359 | -- | -- | -- | 0.127 | 17 | -- | -- | -- | -- |
| 17.72 | 0.196 | 12 | -- | -- | 0.316 | -- | -- | -0.0237 | -- | 24.78 | 265 | -- | -- |
| 25.16 | 0.234 | 12 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 17 | 14.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 18 | 14.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 29 | 14.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 32 | 14.44 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 34 | 14.45 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 40 | 14.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 89 | 14.51 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 116 | 14.57 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 124 | 14.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 130 | 14.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 143 | 14.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 146 | 14.61 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 169 | 14.65 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 226 | 14.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 254 | 14.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 282 | 14.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 311 | 14.72 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 313 | 14.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 354 | 14.74 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 463 | 14.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 530 | 14.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 20 |
| 621 | 14.83 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 679 | 14.85 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 687 | 14.85 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 702 | 14.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 742 | 14.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 747 | 14.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 786 | 14.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 796 | 14.88 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 813 | 14.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 824 | 14.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 830 | 14.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 839 | 14.89 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 863 | 14.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 914 | 14.91 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 916 | 14.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 967 | 14.92 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 982 | 14.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 19 |