Os05g0440100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone deacetylase superfamily protein.
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Os05g0440100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone deacetylase superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.49 | 0.207 | 9.31 | 0.122 | 0.683 | -0.663 | 0.0495 | 0.399 | 0.12 | 5.18 | 25.5 | 564 | -- | -- |
| 19.69 | 0.207 | 9.29 | 0.192 | 0.684 | -0.679 | 0.126 | -- | 0.138 | 5.11 | 25.12 | 526 | -- | -- |
| 19.49 | 0.206 | 9.31 | 0.119 | 0.684 | -0.662 | -- | 0.416 | 0.119 | 5.18 | 25.5 | 563 | -- | -- |
| 19.71 | 0.207 | 9.3 | 0.196 | 0.68 | -0.692 | -- | -- | 0.142 | 5.11 | 25 | 524 | -- | -- |
| 37.36 | 0.285 | 9.33 | 0.027 | -- | -0.774 | -- | 0.636 | 0.0889 | -- | 28.2 | 1229 | -- | -- |
| 26.89 | 0.243 | 9.27 | 0.382 | 0.62 | -- | 0.101 | -- | 0.285 | 4.72 | -- | -- | -- | -- |
| 26.92 | 0.243 | 9.27 | 0.382 | 0.62 | -- | -- | -- | 0.284 | 4.71 | -- | -- | -- | -- |
| 37.74 | 0.286 | 9.31 | 0.162 | -- | -0.801 | -- | -- | 0.118 | -- | 27.3 | 1218 | -- | -- |
| 20.62 | 0.211 | 9.3 | -- | 0.655 | -0.755 | -- | -- | 0.112 | 5.21 | 24.98 | 604 | -- | -- |
| 47.32 | 0.321 | 9.27 | 0.405 | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
| 30.77 | 0.259 | 9.28 | -- | 0.627 | -- | -- | -- | 0.242 | 4.7 | -- | -- | -- | -- |
| 38.34 | 0.288 | 9.32 | -- | -- | -0.874 | -- | -- | 0.0873 | -- | 27.39 | 1222 | -- | -- |
| 51.66 | 0.335 | 9.28 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.80 | temperature | 25 | 720 | < th | dose dependent | sin | 14 | NA |
| 2 | 18.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 41 | 19.10 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 44 | 19.12 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 55 | 19.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 91 | 19.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 110 | 19.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 129 | 19.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 175 | 19.50 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 191 | 19.52 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 204 | 19.54 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 244 | 19.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 245 | 19.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 255 | 19.60 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 268 | 19.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 284 | 19.63 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 285 | 19.63 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 326 | 19.67 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 328 | 19.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 338 | 19.68 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 350 | 19.69 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 362 | 19.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 364 | 19.71 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 381 | 19.72 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 398 | 19.73 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 429 | 19.75 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 464 | 19.77 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 511 | 19.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 530 | 19.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 531 | 19.80 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 580 | 19.82 | radiation | 10 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 582 | 19.82 | radiation | 10 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 585 | 19.82 | radiation | 10 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 610 | 19.82 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 639 | 19.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 683 | 19.86 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 730 | 19.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 747 | 19.88 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 748 | 19.88 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 762 | 19.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 786 | 19.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 787 | 19.89 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 849 | 19.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 875 | 19.92 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 973 | 19.95 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |