BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0440100 Os05g0440100|AK102786
(392 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0440100 Histone deacetylase superfamily protein 739 0.0
Os05g0440300 Similar to S1 self-incompatibility locus-linke... 537 e-153
AK110273 144 1e-34
Os12g0182700 Histone deacetylase superfamily protein 142 3e-34
Os07g0602200 Similar to HDA1 140 1e-33
Os07g0164100 Histone deacetylase superfamily protein 138 7e-33
Os08g0344100 Similar to Histone deacetylase 104 1e-22
Os06g0583400 Similar to Histone deacetylase (Fragment) 100 1e-21
Os11g0200000 Histone deacetylase family protein 99 5e-21
Os02g0214900 Similar to Histone deacetylase 96 5e-20
Os11g0201400 Histone deacetylase family protein 89 5e-18
Os04g0409600 Similar to Histone deacetylase 88 9e-18
Os01g0586400 85 8e-17
>Os05g0440100 Histone deacetylase superfamily protein
Length = 392
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/374 (95%), Positives = 358/374 (95%)
Query: 19 TGEQLAVFWHEGMVAHDAGRGVFDSGRDPGFLDVLDQHPENADRVRNMVSILRRGPIARF 78
TGEQLAVFWHEGMVAHDAGRGVFDSGRDPGFLDVLDQHPENADRVRNMVSILRRGPIARF
Sbjct: 19 TGEQLAVFWHEGMVAHDAGRGVFDSGRDPGFLDVLDQHPENADRVRNMVSILRRGPIARF 78
Query: 79 ISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAKKLCEGTFLNPXXXXXXXXXXXXXXX 138
ISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAKKLCEGTFLNP
Sbjct: 79 ISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAKKLCEGTFLNPGSWGAALLAAGTTLS 138
Query: 139 XMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRKVAVVDIDV 198
MKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRKVAVVDIDV
Sbjct: 139 AMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRKVAVVDIDV 198
Query: 199 HYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSG 258
HYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSG
Sbjct: 199 HYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSG 258
Query: 259 DAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMAD 318
DAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMAD
Sbjct: 259 DAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMAD 318
Query: 319 QHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTMKVVDIM 378
QHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTMKVVDIM
Sbjct: 319 QHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTMKVVDIM 378
Query: 379 KKCWKESIPFLKDI 392
KKCWKESIPFLKDI
Sbjct: 379 KKCWKESIPFLKDI 392
>Os05g0440300 Similar to S1 self-incompatibility locus-linked G221 protein
(Fragment)
Length = 395
Score = 537 bits (1383), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/320 (81%), Positives = 275/320 (85%), Gaps = 2/320 (0%)
Query: 75 IARFISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAK--KLCEGTFLNPXXXXXXXXX 132
I FIS R ++ + EELVQA++ GA K+CE TFLNP
Sbjct: 76 IKIFISCAVQRVPLLDQVPCSITVTNTEELVQADSAGANNNKICECTFLNPGSWDAALLA 135
Query: 133 XXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRKVA 192
MKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRR+VA
Sbjct: 136 AGTTLSAMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGRRRVA 195
Query: 193 VVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIP 252
VVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSG VDE GEGRGLGYNLNIP
Sbjct: 196 VVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGLVDETGEGRGLGYNLNIP 255
Query: 253 LPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQI 312
LPNGSGDAGYEYAMNELVVPAIEKFRPEL+VFVVGQDSS FDPNGRQCLTMDGYRKIGQI
Sbjct: 256 LPNGSGDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQI 315
Query: 313 MRGMADQHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTM 372
MRGMADQHSNGQILIVQEGGYHI+YSAYCLHATLEGVLNLQAPLLDDP+ +YP+DEKYTM
Sbjct: 316 MRGMADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLLDDPLGFYPDDEKYTM 375
Query: 373 KVVDIMKKCWKESIPFLKDI 392
+ VDI+KKCWKESIPFLKDI
Sbjct: 376 QAVDIIKKCWKESIPFLKDI 395
>AK110273
Length = 744
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 175/373 (46%), Gaps = 35/373 (9%)
Query: 15 GAPATGEQLA----VFWHEGMVAHDAGRGVFDSGRDPGFLDVLDQHPENADRVRNMVSIL 70
G P T A + W + M+ H+ G+ V HPE DR+R +++ L
Sbjct: 217 GQPVTATPTAARPLIIWDDEMLLHEEGKAV--------------PHPERPDRLRAIMARL 262
Query: 71 RRGPIARFISWHSGRPAHAAELLSFHSAEYIEEL--VQANAVGAKKLCEGTFLNPXXXXX 128
+ + + R A ELL H+A++++ L + V A + T++N
Sbjct: 263 VGNGLTGGCTRVAARLATKQELLRVHAADHLQRLHLFCSGTVPATIIPADTYINQHTLHC 322
Query: 129 XXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLALDSGR 188
++ G A A++RPPGHHA+ + A G+CF NNA +A + A +G
Sbjct: 323 AALAAGSAAEAAVRVVWGEAAAGAAVIRPPGHHAESNTAMGFCFFNNAAVAARAAQAAGA 382
Query: 189 RKVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYN 248
+V ++D DVH+GNGT F SVL +SLH G +P +G DE+G GRG GY
Sbjct: 383 ERVLILDWDVHHGNGTQHIFEADPSVLYMSLHRY--DRGNFYPGTGGADEVGHGRGAGYT 440
Query: 249 LNIPLPNGS-GDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYR 307
+N+P G+ G+ Y AM ++++P +F P L++ G D++ DP G CLT + +
Sbjct: 441 VNVPWDAGNIGNGDYMAAMEQVILPIAREFAPNLIIISAGFDAADGDPIGGCCLTPECFG 500
Query: 308 KIGQIMRGMADQHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAPLLDDPIAYYPED 367
+ + +A +++ EGGY++ +A A L +L ++P P
Sbjct: 501 NMTAELLPIAP------TVLLLEGGYNLLSTALSTEACLRVLLG------EEPQTLLPRP 548
Query: 368 EKYTMKVVDIMKK 380
+ + KK
Sbjct: 549 SPFGWLAIQAAKK 561
>Os12g0182700 Histone deacetylase superfamily protein
Length = 443
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 155/349 (44%), Gaps = 31/349 (8%)
Query: 54 DQHPENADRVRNMVSILRRGPIARFISWHSG---------RPAHAAELLSFHSAEYIEEL 104
+ HPE RV +V L + S H G +PA ++ HS YI L
Sbjct: 98 EAHPETNKRVPAIVDALEK---LELTSKHRGSQVLEIQDFQPASLDDIALVHSRSYITGL 154
Query: 105 VQANAVGAKK---LCEGTFLNPXXXXXXXXXXXXXXXXMKHI--------LDGHAKIAYA 153
+A + + + EGT + + L + +A
Sbjct: 155 EKAMSRASDEGLIFIEGTGPTYATQTTFQECLLSAGAGITLVDSVVAASKLGPKPPLGFA 214
Query: 154 LVRPPGHHAQPDRADGYCFLNNAGLAVKLALDS-GRRKVAVVDIDVHYGNGTAEGFYHTD 212
LVRPPGHHA P+ G+C N +A + A + G ++V ++D DVH+GNGT + FY
Sbjct: 215 LVRPPGHHAVPEGPMGFCVFGNIAVAARYAQNQHGLKRVMIIDFDVHHGNGTCDAFYEDP 274
Query: 213 SVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVP 272
+ +S H S+P +G + ++G+G G G LN+PLP GSGD A +E++ P
Sbjct: 275 DIFFLSTHQLG-----SYPGTGKIHQVGQGNGEGTTLNLPLPGGSGDYAMRCAFDEVIAP 329
Query: 273 AIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGG 332
A ++F+P++++ G D+ DP T + + +R +A + G+ + EGG
Sbjct: 330 AAQRFKPDIILVSAGYDAHALDPLAGLQFTTGTFYMLAARIREVAAELCGGRCVFFLEGG 389
Query: 333 YHISYSAYCLHATLEGVLN--LQAPLLDDPIAYYPEDEKYTMKVVDIMK 379
Y++ + + T L A DDP Y E + + +D K
Sbjct: 390 YNLESLSSSVADTFRAFLGEPSLAARFDDPAMLYEEPTRKIREAIDKAK 438
>Os07g0602200 Similar to HDA1
Length = 695
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 162/343 (47%), Gaps = 20/343 (5%)
Query: 54 DQHPENADRVRNMVSILRRGPIARFISWHSGRPAHAAELLSFHSAEYIEELVQANAVG-- 111
++HPEN +R+R + L +A + A + S HS +I+ + ++
Sbjct: 30 EEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVHSQNHIKLMRSISSKEYD 89
Query: 112 ------AKKLCEGTFLNPXXXXXXXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPD 165
A+K + N + + G A ALVRPPGHHA+ +
Sbjct: 90 SRRNKIARKF-NSIYFNKGSSESAFLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHN 148
Query: 166 RADGYCFLNNAGLAVKLAL----DSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLH- 220
A G+C NN +A L D G +K+ +VD DVH+GNGT + FY VL S+H
Sbjct: 149 EAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQKMFYSDPRVLFFSVHR 208
Query: 221 MKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGS-GDAGYEYAMNELVVPAIEKFRP 279
+GS+ P+ + S IGEG G GYN+N+P +G GDA Y A + +++P E F P
Sbjct: 209 FDYGSFYPAEGDA-SYCFIGEGDGKGYNINVPWEHGKCGDADYIAAWDHVLLPVAEAFNP 267
Query: 280 ELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHISYSA 339
++++ G D++ DP G C+T +GY + + G A G+I++ EGGY++ A
Sbjct: 268 DIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFA----QGRIVMALEGGYNLRSIA 323
Query: 340 YCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTMKVVDIMKKCW 382
+ A + +L + + + + V D +K W
Sbjct: 324 NSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRDELKTFW 366
>Os07g0164100 Histone deacetylase superfamily protein
Length = 623
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 168/344 (48%), Gaps = 18/344 (5%)
Query: 56 HPENADRVRNMVSILRR-GPIARFISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAKK 114
HPE DR+R + + L G R ELL H++++I+ + Q +
Sbjct: 225 HPERPDRLRAIAASLAAAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSY 284
Query: 115 LCEGTFLNPXXXXXXXXXXXXXXXXMKHILDGHAKIAYALVRPPGHHAQPDRADGYCFLN 174
T+ N I+ G + +A+VRPPGHHA +A G+C N
Sbjct: 285 FTSDTYANGHSACAAKLAAGICADLANLIVSGRVRNGFAMVRPPGHHAGVKQAMGFCLHN 344
Query: 175 NAGLAVKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSG 234
NA +A A +G +KV +VD DVH+GNGT E F +SVL ISLH G +P +G
Sbjct: 345 NAAVAALAAQRAGAKKVLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHED--GSFYPGTG 402
Query: 235 SVDEIGEGRGLGYNLNIPLPNGS-GDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTF 293
+ +E+G G G+++NIP G GD Y +A +V+P +F P++ + G D++
Sbjct: 403 AANEVGVMDGQGFSVNIPWSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARG 462
Query: 294 DPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYH---ISYSAYCLHATLEGVL 350
DP G +T GY ++ ++ S G++L++ EGGY+ IS SA + L G
Sbjct: 463 DPLGCCDVTPAGYSRMASMLTAC----SQGKLLVILEGGYNLRSISSSATEVVKVLLG-- 516
Query: 351 NLQAPLLDDPIAYYPEDE--KYTMKVVDIMKKCWKESIPFLKDI 392
+P+ D A P +E + ++V+ I ++ W +P +
Sbjct: 517 --DSPVYDTD-ATEPSEEGIQTVLQVLSIQQQFWPVLVPSFASV 557
>Os08g0344100 Similar to Histone deacetylase
Length = 458
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 22/296 (7%)
Query: 56 HPENADRVRNMVSILRRGPIARFISWHSGRPAHAAELLSFHSAEYIEELVQANAVGAKKL 115
HP R+R S++ + R + PA A++ FHS +Y+ L A+A G L
Sbjct: 41 HPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASDADIRRFHSDDYVAFL--ASATGNPAL 98
Query: 116 CEGTFLNPXXXXXXXXXXXXXXXXMKHILDGHAKIAYALVRPPG----------HHAQPD 165
+ + + G A L R HHA+
Sbjct: 99 LDARAVKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKG 158
Query: 166 RADGYCFLNNAGLAVKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGS 225
A G+C++N+ LA+ L L R+V VDIDVH+G+G E F+ T+ V+T S H
Sbjct: 159 EASGFCYVNDIVLAI-LELLKFHRRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFH----K 213
Query: 226 WGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELLVFV 285
+G P +G + ++G G G Y LN+PL +G D + ++ +E ++P+++V
Sbjct: 214 YGDFFPGTGHITDVGAGEGKHYALNVPLSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQ 273
Query: 286 VGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHISYSAYC 341
G DS D G L++ G+ + +R N ++++ GGY I A C
Sbjct: 274 CGADSLAGDRLGCFNLSVKGHADCLRYLRSF-----NIPMMVLGGGGYTIRNVARC 324
>Os06g0583400 Similar to Histone deacetylase (Fragment)
Length = 518
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 160 HHAQPDRADGYCFLNNAGLAVKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISL 219
HHA+ A G+C++N+ LA+ L L ++V VDID+H+G+G E FY TD V+T+S
Sbjct: 152 HHAKKCEASGFCYVNDIVLAI-LELLKYHQRVLYVDIDIHHGDGVEEAFYTTDRVMTVSF 210
Query: 220 HMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 279
H +G P +G + +IG +G Y+LN+PL +G D Y+ ++ +E FRP
Sbjct: 211 H----KFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLFKPIMGKVMEVFRP 266
Query: 280 ELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGM 316
+V G DS + D G L++ G+ + + MR
Sbjct: 267 GAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMRSF 303
>Os11g0200000 Histone deacetylase family protein
Length = 456
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 119/260 (45%), Gaps = 41/260 (15%)
Query: 85 RPAHAAELLSFHSAEYIEELVQANAVGAKKLCEGTFLNPXXXXXXXXXXXX--------- 135
RPA AE+ FHS EY++ L + L ++ N
Sbjct: 67 RPATEAEIRRFHSPEYVDLL--------RDLTPESYFNDAALRQKAEDDHGIGGDDDCPA 118
Query: 136 --------------XXXXMKHILDGHAKIAYALVRPPG--HHAQPDRADGYCFLNNAGLA 179
+ ++DG + IA + G HHA +A G+C++N+ LA
Sbjct: 119 FDRLWKYCRGYAGGSFAAARALVDGASDIA---INWSGGMHHASACKATGFCYVNDIVLA 175
Query: 180 VKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSH---PQSGSV 236
+ L + RR V VDID H+G+G F ++ V+T+S H ++G P P SG++
Sbjct: 176 INELLGTFRR-VIYVDIDAHHGDGVQNAFLDSNRVMTLSFH-RYGKITPHKDFFPGSGAI 233
Query: 237 DEIGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPN 296
+EIG+G G Y++N+PL G D Y +V A+E F+PE +V G DS + D
Sbjct: 234 NEIGDGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRL 293
Query: 297 GRQCLTMDGYRKIGQIMRGM 316
G L++ G+ + +RG
Sbjct: 294 GGMELSVRGHAECVSFLRGF 313
>Os02g0214900 Similar to Histone deacetylase
Length = 510
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 160 HHAQPDRADGYCFLNNAGLAVKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISL 219
HHA+ A G+C++N+ LA+ L L +V +DID+H+G+G E FY T+ V+T+S
Sbjct: 157 HHAKKSEASGFCYVNDIVLAI-LELLKLHERVLYIDIDIHHGDGVEEAFYTTNRVMTVSF 215
Query: 220 HMKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRP 279
H +G P +G + +IG G Y LN+PL +G D Y+ ++ +E +RP
Sbjct: 216 H----KFGDYFPGTGDIRDIGYSEGKYYCLNVPLDDGIDDDSYQSIFKPIISKVMEMYRP 271
Query: 280 ELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGM 316
+V G DS + D G L+ G+ + + MR
Sbjct: 272 GAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMRSF 308
>Os11g0201400 Histone deacetylase family protein
Length = 461
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 43/255 (16%)
Query: 85 RPAHAAELLSFHSAEYIEELVQAN------------------AVGAKKLCEGTFLNPXXX 126
RPA AE+ FHS EY++ L +G K C
Sbjct: 67 RPATEAEIRRFHSPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGKDDCPAF---DRLW 123
Query: 127 XXXXXXXXXXXXXMKHILDGHAKIAYALVRPPG--HHAQPDRADGYCFLNNAGLAVKLAL 184
+ ++DG + IA + G HHA +A G+C++N+ LA+ L
Sbjct: 124 KYCRGYAGGSLAAARALVDGASDIA---INWSGGMHHASACKATGFCYVNDIVLAINELL 180
Query: 185 DSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSH---PQSGSVDEIGE 241
+ RR V VDID H+G+G F ++ V+T+S H ++G P P SG+++EIG
Sbjct: 181 GTFRR-VIYVDIDAHHGDGVQNAFLDSNRVMTLSFH-RYGKITPHKNFFPGSGAINEIGA 238
Query: 242 GRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCL 301
G G Y++N+PL DAG + A+E F+PE +V G DS + D G L
Sbjct: 239 GAGEHYSVNVPL-----DAG-------VRADAMEVFQPEAIVLQCGADSLSGDRLGGMEL 286
Query: 302 TMDGYRKIGQIMRGM 316
++ G+ + +RG
Sbjct: 287 SVRGHAECVGFLRGF 301
>Os04g0409600 Similar to Histone deacetylase
Length = 309
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 13/191 (6%)
Query: 190 KVAVVDIDVHYGNGTAEGFYHTDSVLTISLHMKHGSWGPSHPQSGSVDEIGEGRGLGYNL 249
+V +DIDVH+G+G E FY TD V+T+S H K+G + P +G + +IGE G Y +
Sbjct: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFH-KYGDF--FFPGTGDIKDIGEREGKYYAI 100
Query: 250 NIPLPNGSGDAGYEYAMNELVVPAIEKFRPELLVFVVGQDSSTFDPNGRQCLTMDGYRKI 309
NIPL +G D+G+ ++ +E + P +V G DS D G L+++G+ +
Sbjct: 101 NIPLKDGIDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAEC 160
Query: 310 GQIMRGMADQHSNGQILIVQEGGYHISYSAYCLHATLEGVLNLQAP--LLDDP-IAYYPE 366
+ ++ N +L+ GGY A C +L+ + P + D+ I Y+
Sbjct: 161 VKFVKKF-----NIPLLVTGGGGYTKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAP 215
Query: 367 DEKYTMKVVDI 377
D YT+KV ++
Sbjct: 216 D--YTLKVSNV 224
>Os01g0586400
Length = 481
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 160 HHAQPDRADGYCFLNNAGLAVKLALDSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISL 219
HHA A G+C++N+ LA++ L RR V VDIDVH+G+G F ++ V+T+S
Sbjct: 164 HHACRGGARGFCYVNDIVLAIRELLAHFRR-VLYVDIDVHHGDGVQAAFEASNRVMTVSF 222
Query: 220 HMKHGSWGPSHPQSGSVDEIG-EGRGLGYNLNIPLPNGSGDAGYEYAMNELVVPAIEKFR 278
H +HG G P SG+V ++G +G G LN+P+ G GD Y ++ +E F+
Sbjct: 223 H-QHG--GGFFPGSGAVADVGKKGPGRYCALNVPVSVGIGDEEYHRLFEPIMARVMEVFQ 279
Query: 279 PELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMR 314
PE +V G DS D G LT G+ + +R
Sbjct: 280 PEAVVLQCGADSLAGDRLGELNLTTRGHAQCVSFIR 315
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,233,038
Number of extensions: 652539
Number of successful extensions: 1300
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1277
Number of HSP's successfully gapped: 13
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)