Os07g0602200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HDA1.
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Os07g0602200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HDA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.54 | 0.233 | 10.8 | 0.505 | 0.884 | -1.39 | 0.168 | 1.55 | -0.0955 | 8.82 | 50.46 | 300 | -- | -- |
| 24.9 | 0.232 | 10.8 | 0.544 | 0.871 | -1.09 | 0.161 | -- | -0.0995 | 8.83 | 50.51 | 293 | -- | -- |
| 24.63 | 0.231 | 10.8 | 0.513 | 0.882 | -1.37 | -- | 1.53 | -0.0958 | 8.82 | 50.5 | 302 | -- | -- |
| 24.85 | 0.232 | 10.8 | 0.555 | 0.873 | -0.924 | -- | -- | -0.0954 | 8.8 | 51.58 | 287 | -- | -- |
| 63.55 | 0.371 | 10.8 | 0.52 | -- | -0.709 | -- | 0.762 | -0.0646 | -- | 50.59 | 1320 | -- | -- |
| 32.01 | 0.265 | 10.8 | 0.643 | 0.776 | -- | 0.00457 | -- | -0.131 | 9.31 | -- | -- | -- | -- |
| 32.01 | 0.265 | 10.8 | 0.643 | 0.776 | -- | -- | -- | -0.131 | 9.31 | -- | -- | -- | -- |
| 63.09 | 0.37 | 10.8 | 0.554 | -- | -0.404 | -- | -- | -0.067 | -- | 53.26 | 1400 | -- | -- |
| 32.7 | 0.266 | 10.8 | -- | 0.898 | -1.05 | -- | -- | -0.145 | 8.65 | 51.08 | 328 | -- | -- |
| 67.09 | 0.383 | 10.8 | 0.64 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 42.91 | 0.306 | 10.8 | -- | 0.776 | -- | -- | -- | -0.203 | 9.24 | -- | -- | -- | -- |
| 70.54 | 0.391 | 10.8 | -- | -- | -0.71 | -- | -- | -0.115 | -- | 51.73 | 1407 | -- | -- |
| 77.88 | 0.412 | 10.8 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.30 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 2 | 23.31 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 4 | 23.36 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 8 | 23.37 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 19 | 23.40 | humidity | 80 | 90 | < th | dose dependent | sin | 15 | NA |
| 23 | 23.41 | humidity | 80 | 30 | < th | dose dependent | sin | 13 | NA |
| 32 | 23.43 | humidity | 50 | 270 | > th | dose independent | rect. | 4 | 23 |
| 36 | 23.45 | humidity | 80 | 270 | < th | dose dependent | sin | 18 | NA |
| 41 | 23.51 | humidity | 50 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 50 | 23.61 | humidity | 90 | 90 | < th | dose dependent | rect. | 15 | 7 |
| 74 | 23.79 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 23 |
| 75 | 23.79 | humidity | 50 | 90 | > th | dose dependent | sin | 17 | NA |
| 80 | 23.79 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 87 | 23.81 | humidity | 70 | 90 | > th | dose independent | rect. | 11 | 16 |
| 95 | 23.83 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 100 | 23.84 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 143 | 24.04 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 144 | 24.04 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 19 |
| 164 | 24.11 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 18 |
| 166 | 24.12 | humidity | 70 | 90 | > th | dose independent | sin | 15 | NA |
| 167 | 24.12 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 7 |
| 183 | 24.13 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 17 |
| 187 | 24.14 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 188 | 24.15 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 195 | 24.17 | humidity | 90 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 211 | 24.21 | humidity | 70 | 90 | < th | dose independent | rect. | 15 | 5 |
| 237 | 24.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 15 |
| 245 | 24.23 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 248 | 24.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 255 | 24.24 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 10 |
| 278 | 24.26 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 6 |
| 285 | 24.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 317 | 24.30 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 342 | 24.32 | humidity | 50 | 4320 | > th | dose independent | sin | 12 | NA |
| 359 | 24.34 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 14 |
| 360 | 24.34 | temperature | 25 | 90 | > th | dose dependent | sin | 16 | NA |
| 366 | 24.35 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 411 | 24.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 6 |
| 414 | 24.39 | humidity | 50 | 4320 | < th | dose independent | sin | 12 | NA |
| 415 | 24.39 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 10 |
| 432 | 24.40 | humidity | 70 | 90 | < th | dose independent | sin | 14 | NA |
| 483 | 24.43 | humidity | 70 | 270 | < th | dose independent | sin | 17 | NA |
| 488 | 24.44 | humidity | 50 | 270 | < th | dose independent | rect. | 13 | 3 |
| 490 | 24.44 | humidity | 50 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 534 | 24.48 | humidity | 50 | 270 | > th | dose independent | sin | 17 | NA |
| 545 | 24.49 | humidity | 60 | 270 | > th | dose independent | rect. | 15 | 11 |
| 550 | 24.50 | humidity | 70 | 270 | > th | dose independent | sin | 18 | NA |
| 620 | 24.54 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 639 | 24.56 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 4 |
| 673 | 24.57 | humidity | 50 | 270 | < th | dose independent | rect. | 13 | 22 |
| 691 | 24.58 | humidity | 50 | 270 | < th | dose independent | sin | 17 | NA |
| 775 | 24.61 | humidity | 50 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 847 | 24.63 | humidity | 50 | 270 | > th | dose independent | no | NA | NA |
| 892 | 24.65 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |