BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0602200 Os07g0602200|AK111892
(695 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0602200 Similar to HDA1 1398 0.0
Os07g0164100 Histone deacetylase superfamily protein 283 2e-76
AK110273 276 3e-74
Os12g0182700 Histone deacetylase superfamily protein 193 4e-49
Os05g0440100 Histone deacetylase superfamily protein 157 2e-38
Os05g0440300 Similar to S1 self-incompatibility locus-linke... 147 3e-35
Os06g0583400 Similar to Histone deacetylase (Fragment) 120 3e-27
Os08g0344100 Similar to Histone deacetylase 117 4e-26
Os02g0214900 Similar to Histone deacetylase 106 6e-23
Os11g0200000 Histone deacetylase family protein 100 5e-21
Os11g0201400 Histone deacetylase family protein 96 1e-19
Os01g0586400 87 3e-17
Os04g0409600 Similar to Histone deacetylase 75 2e-13
>Os07g0602200 Similar to HDA1
Length = 695
Score = 1398 bits (3618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/695 (96%), Positives = 673/695 (96%)
Query: 1 MXXXXXXXXXXRVGLLYDERMCAHATPDGEEHPENPERLRAIWRKLSADGVASRCMIMKA 60
M RVGLLYDERMCAHATPDGEEHPENPERLRAIWRKLSADGVASRCMIMKA
Sbjct: 1 MAAATTAAAAARVGLLYDERMCAHATPDGEEHPENPERLRAIWRKLSADGVASRCMIMKA 60
Query: 61 KEAEDKYIASVHSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVI 120
KEAEDKYIASVHSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVI
Sbjct: 61 KEAEDKYIASVHSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVI 120
Query: 121 EVAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILI 180
EVAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILI
Sbjct: 121 EVAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILI 180
Query: 181 VDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPW 240
VDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPW
Sbjct: 181 VDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPW 240
Query: 241 EHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTK 300
EHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTK
Sbjct: 241 EHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTK 300
Query: 301 LLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRD 360
LLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRD
Sbjct: 301 LLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRD 360
Query: 361 ELKTFWPVLSNRLPENISLRSRPSQIELYSSGSDSEVEDLPDAIASVNIIQITYGIISES 420
ELKTFWPVLSNRLPENISLRSRPSQIELYSSGSDSEVEDLPDAIASVNIIQITYGIISES
Sbjct: 361 ELKTFWPVLSNRLPENISLRSRPSQIELYSSGSDSEVEDLPDAIASVNIIQITYGIISES 420
Query: 421 LSKLNLDEDKIATKTTSSNVMVEGPTDSVEPQNDGSAAVSTEGIXXXXXXXXXXXXKVYV 480
LSKLNLDEDKIATKTTSSNVMVEGPTDSVEPQNDGSAAVSTEGI KVYV
Sbjct: 421 LSKLNLDEDKIATKTTSSNVMVEGPTDSVEPQNDGSAAVSTEGISSLSSTWRSELSKVYV 480
Query: 481 WYASFGSNMWTPRFLCYIQGGKAEGMNIPCFGSHDTSPPRGSMWKTVPHRLFFGRSSTPC 540
WYASFGSNMWTPRFLCYIQGGKAEGMNIPCFGSHDTSPPRGSMWKTVPHRLFFGRSSTPC
Sbjct: 481 WYASFGSNMWTPRFLCYIQGGKAEGMNIPCFGSHDTSPPRGSMWKTVPHRLFFGRSSTPC 540
Query: 541 WGTGGVAFLNPEINHTENSYVCMYKITLEQFNDVLFQENRLVKENGESGKTESPDSPLIG 600
WGTGGVAFLNPEINHTENSYVCMYKITLEQFNDVLFQENRLVKENGESGKTESPDSPLIG
Sbjct: 541 WGTGGVAFLNPEINHTENSYVCMYKITLEQFNDVLFQENRLVKENGESGKTESPDSPLIG 600
Query: 601 LSEIEFVSRNKGVHLAPIKDSWYSNVLYLGEEDNLPILTMTCPSSDVERCRSGELPLCPP 660
LSEIEFVSRNKGVHLAPIKDSWYSNVLYLGEEDNLPILTMTCPSSDVERCRSGELPLCPP
Sbjct: 601 LSEIEFVSRNKGVHLAPIKDSWYSNVLYLGEEDNLPILTMTCPSSDVERCRSGELPLCPP 660
Query: 661 SKTYSATLIRGLMEGKHLDADAAASYINTAATRGL 695
SKTYSATLIRGLMEGKHLDADAAASYINTAATRGL
Sbjct: 661 SKTYSATLIRGLMEGKHLDADAAASYINTAATRGL 695
>Os07g0164100 Histone deacetylase superfamily protein
Length = 623
Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/357 (43%), Positives = 222/357 (62%), Gaps = 18/357 (5%)
Query: 17 YDERMCAHATPDGEE--HPENPERLRAIWRKLSADGV-ASRCMIMKAKEAEDKYIASVHS 73
+DERM H+ + + HPE P+RLRAI L+A G+ S+C+++ +E + + VH+
Sbjct: 208 FDERMLLHSEIEIKPNPHPERPDRLRAIAASLAAAGIFPSKCVMVPPREITKEELLRVHT 267
Query: 74 QNHIKLMRSISSKEYDSRRNKIARKFNS-IYFNKGSSESAFLAAGSVIEVAEKVAAGELS 132
+HI + +N + F S Y N S+ +A LAAG ++A + +G +
Sbjct: 268 SDHID--------SVEQTKNMLYSYFTSDTYANGHSACAAKLAAGICADLANLIVSGRVR 319
Query: 133 SAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQ 192
+ A+VRPPGHHA +AMGFCL NN A+AA KK+LIVDWDVHHGNGTQ
Sbjct: 320 NGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGA----KKVLIVDWDVHHGNGTQ 375
Query: 193 KMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPWEHGKCGDADYIA 252
++F D VL+ S+HR + GSFYP G A+ +G DG+G+++N+PW G GD DYI
Sbjct: 376 EIFDGDNSVLYISLHRHEDGSFYPGTGAANE--VGVMDGQGFSVNIPWSRGGVGDNDYIF 433
Query: 253 AWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFAQGRIVMA 312
A+ HV+LP+A F PDI ++SAGFDAA GDPLG C +TP GY+ + + L +QG++++
Sbjct: 434 AFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMASMLTACSQGKLLVI 493
Query: 313 LEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRDELKTFWPVL 369
LEGGYNLRSI++S + KVLLGD +DT +P E + + V + FWPVL
Sbjct: 494 LEGGYNLRSISSSATEVVKVLLGDSPVYDTDATEPSEEGIQTVLQVLSIQQQFWPVL 550
>AK110273
Length = 744
Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 222/381 (58%), Gaps = 17/381 (4%)
Query: 15 LLYDERMCAHATPDGEEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVHSQ 74
+++D+ M H HPE P+RLRAI +L +G+ C + A+ A + + VH+
Sbjct: 231 IIWDDEMLLHEEGKAVPHPERPDRLRAIMARLVGNGLTGGCTRVAARLATKQELLRVHAA 290
Query: 75 NHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVIEVAEKVAAGELSSA 134
+H++ + S + Y N+ + A LAAGS E A +V GE ++
Sbjct: 291 DHLQRLHLFCSGTVPATIIPA-----DTYINQHTLHCAALAAGSAAEAAVRVVWGEAAAG 345
Query: 135 IALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQKM 194
A++RPPGHHAE N AMGFC FNN A+AA + ++LI+DWDVHHGNGTQ +
Sbjct: 346 AAVIRPPGHHAESNTAMGFCFFNNAAVAARAAQAAGAE----RVLILDWDVHHGNGTQHI 401
Query: 195 FYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPWEHGKCGDADYIAAW 254
F +DP VL+ S+HR+D G+FYP G A +G G G GY +NVPW+ G G+ DY+AA
Sbjct: 402 FEADPSVLYMSLHRYDRGNFYPGTGGADE--VGHGRGAGYTVNVPWDAGNIGNGDYMAAM 459
Query: 255 DHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFAQGRIVMALE 314
+ V+LP+A F P+++++SAGFDAA GDP+GGCC+TP + + +LL A V+ LE
Sbjct: 460 EQVILPIAREFAPNLIIISAGFDAADGDPIGGCCLTPECFGNMTAELLPIAP--TVLLLE 517
Query: 315 GGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRDELKTFWPVLSNRLP 374
GGYNL S A S AC +VLLG++ + P PF W IQA + +W L+ P
Sbjct: 518 GGYNLLSTALSTEACLRVLLGEEPQTLLPRPSPF--GWLAIQAAKKAHSRYWSCLAGAFP 575
Query: 375 ENISLRSRPSQIELYSSGSDS 395
+ + S Q+ L GSDS
Sbjct: 576 QLHAGVSLQQQLRLI--GSDS 594
>Os12g0182700 Histone deacetylase superfamily protein
Length = 443
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 131/352 (37%), Positives = 186/352 (52%), Gaps = 29/352 (8%)
Query: 30 EEHPENPERLRAIWRKLSADGVASRCMIMKAKEAED------KYIASVHSQNHIKLMRSI 83
E HPE +R+ AI L + S+ + E +D IA VHS+++I +
Sbjct: 98 EAHPETNKRVPAIVDALEKLELTSKHRGSQVLEIQDFQPASLDDIALVHSRSYITGLEKA 157
Query: 84 SSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVIEVAEKV-AAGELSS----AIALV 138
S+ D I Y + + + L+AG+ I + + V AA +L ALV
Sbjct: 158 MSRASDEGLIFI-EGTGPTYATQTTFQECLLSAGAGITLVDSVVAASKLGPKPPLGFALV 216
Query: 139 RPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQKMFYSD 198
RPPGHHA MGFC+F N+A+AA Y N+ G+K+++I+D+DVHHGNGT FY D
Sbjct: 217 RPPGHHAVPEGPMGFCVFGNIAVAARYAQNQH---GLKRVMIIDFDVHHGNGTCDAFYED 273
Query: 199 PRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPWEHGKCGDADYIAAWDHVL 258
P + F S H+ GS YP G +G+G+G+G +N+P G GD A+D V+
Sbjct: 274 PDIFFLSTHQL--GS-YPGTGKIHQ--VGQGNGEGTTLNLPLP-GGSGDYAMRCAFDEVI 327
Query: 259 LPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFAQ----GRIVMALE 314
P A+ F PDI+LVSAG+DA DPL G T + +L ++ A GR V LE
Sbjct: 328 APAAQRFKPDIILVSAGYDAHALDPLAGLQFTTGTFYMLAARIREVAAELCGGRCVFFLE 387
Query: 315 GGYNLRSIANSVSACAKVLLGD---KFRFDTPDMQPFESSWRVIQAVRDELK 363
GGYNL S+++SV+ + LG+ RFD P M +E R I+ D+ K
Sbjct: 388 GGYNLESLSSSVADTFRAFLGEPSLAARFDDPAML-YEEPTRKIREAIDKAK 438
>Os05g0440100 Histone deacetylase superfamily protein
Length = 392
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 172/343 (50%), Gaps = 20/343 (5%)
Query: 30 EEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVHSQNHIKLMRSISSKEYD 89
++HPEN +R+R + L +A + A + S HS +I+ + ++
Sbjct: 54 DQHPENADRVRNMVSILRRGPIARFISWHSGRPAHAAELLSFHSAEYIEELVQANAVG-- 111
Query: 90 SRRNKIARKF-NSIYFNKGSSESAFLAAGSVIEVAEKVAAGELSSAIALVRPPGHHAEHN 148
A+K + N GS +A LAAG+ + + + G A ALVRPPGHHA+ +
Sbjct: 112 ------AKKLCEGTFLNPGSWGAALLAAGTTLSAMKHILDGHAKIAYALVRPPGHHAQPD 165
Query: 149 EAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQKMFYSDPRVLFFSVHR 208
A G+C NN +A L D G +K+ +VD DVH+GNGT + FY VL S+H
Sbjct: 166 RADGYCFLNNAGLAVKLAL----DSGRRKVAVVDIDVHYGNGTAEGFYHTDSVLTISLH- 220
Query: 209 FDYGSFYPAEGDA-SYCFIGEGDGKGYNINVPWEHGKCGDADYIAAWDHVLLPVAEAFNP 267
+GS+ P+ + S IGEG G GYN+N+P +G GDA Y A + +++P E F P
Sbjct: 221 MKHGSWGPSHPQSGSVDEIGEGRGLGYNLNIPLPNGS-GDAGYEYAMNELVVPAIEKFRP 279
Query: 268 DIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFA----QGRIVMALEGGYNLRSIA 323
++++ G D++ DP G C+T +GY + + G A G+I++ EGGY++ A
Sbjct: 280 ELLVFVVGQDSSTFDPNGRQCLTMDGYRKIGQIMRGMADQHSNGQILIVQEGGYHISYSA 339
Query: 324 NSVSACAKVLLGDKFRFDTPDMQPFESSWRVIQAVRDELKTFW 366
+ A + +L + + + + V D +K W
Sbjct: 340 YCLHATLEGVLNLQAPLLDDPIAYYPEDEKYTMKVVDIMKKCW 382
>Os05g0440300 Similar to S1 self-incompatibility locus-linked G221 protein
(Fragment)
Length = 395
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 163/314 (51%), Gaps = 31/314 (9%)
Query: 65 DKYIASVHSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVIEVAE 124
D+ S+ N +L+++ S+ + NKI + N GS ++A LAAG+ + +
Sbjct: 91 DQVPCSITVTNTEELVQADSA---GANNNKICE---CTFLNPGSWDAALLAAGTTLSAMK 144
Query: 125 KVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWD 184
+ G A ALVRPPGHHA+ + A G+C NN +A L D G +++ +VD D
Sbjct: 145 HILDGHAKIAYALVRPPGHHAQPDRADGYCFLNNAGLAVKLAL----DSGRRRVAVVDID 200
Query: 185 VHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYC-FIGEGDGKGYNINVPWEHG 243
VH+GNGT + FY VL S+H +GS+ P+ + GEG G GYN+N+P +G
Sbjct: 201 VHYGNGTAEGFYHTDSVLTISLH-MKHGSWGPSHPQSGLVDETGEGRGLGYNLNIPLPNG 259
Query: 244 KCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLG 303
GDA Y A + +++P E F P++++ G D++ DP G C+T +GY + + G
Sbjct: 260 S-GDAGYEYAMNELVVPAIEKFRPELMVFVVGQDSSAFDPNGRQCLTMDGYRKIGQIMRG 318
Query: 304 FA----QGRIVMALEGGYNLRSIANSVSACAK-------VLLGDKFRFDTPDMQPFESSW 352
A G+I++ EGGY++ A + A + LL D F PD + +
Sbjct: 319 MADQHSNGQILIVQEGGYHITYSAYCLHATLEGVLNLQAPLLDDPLGF-YPDDEKY---- 373
Query: 353 RVIQAVRDELKTFW 366
+QAV D +K W
Sbjct: 374 -TMQAV-DIIKKCW 385
>Os06g0583400 Similar to Histone deacetylase (Fragment)
Length = 518
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 178/413 (43%), Gaps = 47/413 (11%)
Query: 12 RVGLLYDERMCAHATPDGEEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASV 71
RV YD + + G+ HP P R+R L+ G+ + ++K A D+ +
Sbjct: 23 RVCYFYDAEVGNYYY--GQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLCRF 80
Query: 72 HSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAFLAAGSVIEVAEKVAAGEL 131
H+ +++ +RS++ + + + R FN G F + + A G +
Sbjct: 81 HADDYVAFLRSVTPETQQDQIRALKR------FNVGEDCPVF---DGLYSFCQTYAGGSV 131
Query: 132 SSAIALVRPPG---------HHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVD 182
A+ L HHA+ EA GFC N++ +A LL +++L VD
Sbjct: 132 GGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYH-----QRVLYVD 186
Query: 183 WDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPWEH 242
D+HHG+G ++ FY+ RV+ S H+F G ++P GD IG GK Y++NVP +
Sbjct: 187 IDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIR--DIGHSKGKYYSLNVPLDD 242
Query: 243 GKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLL 302
G D Y + + ++ V E F P V++ G D+ GD LG ++ G+A + +
Sbjct: 243 G-IDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFMR 301
Query: 303 GFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFE-----------SS 351
F +++ GGY +R++A V LG + P + FE S
Sbjct: 302 SF-NVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPS 360
Query: 352 WRVIQAVRDELKTFWPVLSNRLPE-----NISLRSRPSQIELYSSGSDSEVED 399
+ R +L L + L + ++ + RP + EL D E D
Sbjct: 361 NMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPD 413
>Os08g0344100 Similar to Histone deacetylase
Length = 458
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 139/305 (45%), Gaps = 30/305 (9%)
Query: 29 GEEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVHSQNHIKLMRSISSKEY 88
G+ HP P R+R + G+ + + A D I HS +++ + S +
Sbjct: 38 GQGHPMKPHRIRMAHSLVVHYGLHRLLELSRPYPASDADIRRFHSDDYVAFLASATGNPA 97
Query: 89 DSRRNKIARKFNSIYFNKGSSESAFLAAGSVIEVAEKVAAGELSSAIALVRPPG------ 142
+ R FN G F + + A G + +A+ L R
Sbjct: 98 LLDARAVKR------FNVGEDCPVF---DGLFPFCQASAGGSIGAAVKLNRGDADITVNW 148
Query: 143 ----HHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQKMFYSD 198
HHA+ EA GFC N++ +A LL +++L VD DVHHG+G ++ F++
Sbjct: 149 AGGLHHAKKGEASGFCYVNDIVLAILELLKFH-----RRVLYVDIDVHHGDGVEEAFFTT 203
Query: 199 PRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPWEHGKCGDADYIAAWDHVL 258
RV+ S H+ YG F+P G + +G G+GK Y +NVP G D + + ++
Sbjct: 204 NRVMTCSFHK--YGDFFPGTGHITD--VGAGEGKHYALNVPLSDG-IDDDTFRDLFQCII 258
Query: 259 LPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGFAQGRIVMALEGGYN 318
V E + PD+V++ G D+ GD LG ++ G+A L L F +V+ GGY
Sbjct: 259 KKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRYLRSFNIPMMVLG-GGGYT 317
Query: 319 LRSIA 323
+R++A
Sbjct: 318 IRNVA 322
>Os02g0214900 Similar to Histone deacetylase
Length = 510
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 164/347 (47%), Gaps = 36/347 (10%)
Query: 20 RMCAHATPD------GEEHPENPERLRAIWRKLSADGV--ASRCMIMKAKEAEDKYIASV 71
R+C P+ G+ HP P R+R L+ G+ ++ +++ A +
Sbjct: 25 RVCYFYDPEVGNYYYGQGHPMKPHRVRMTHALLAHYGLLAPAKMEVLRPLPARGIDLCRF 84
Query: 72 HSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSSESAF--------LAAGSVIEVA 123
HS +++ +R+++ + + + R FN G F AG+ + A
Sbjct: 85 HSDDYVAFLRAVTPETQLGQVRALRR------FNIGPDCPVFDGLYAYCQTYAGASVGAA 138
Query: 124 EKVAAGELSSAIALVRPPG-HHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKKILIVD 182
K+ G + IA+ G HHA+ +EA GFC N++ +A LL +++L +D
Sbjct: 139 VKLNHG--THDIAINWSGGLHHAKKSEASGFCYVNDIVLAILELLKLH-----ERVLYID 191
Query: 183 WDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGEGDGKGYNINVPWEH 242
D+HHG+G ++ FY+ RV+ S H+F G ++P GD IG +GK Y +NVP +
Sbjct: 192 IDIHHGDGVEEAFYTTNRVMTVSFHKF--GDYFPGTGDIR--DIGYSEGKYYCLNVPLDD 247
Query: 243 GKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYALLLTKLL 302
G D Y + + ++ V E + P V++ G D+ GD LG ++ G+A + +
Sbjct: 248 G-IDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHAECVKFMR 306
Query: 303 GFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPDMQPFE 349
F +++ GGY +R++A V LG++ + P + +E
Sbjct: 307 SF-NVPLLLLGGGGYTIRNVARCWCYETGVALGEELQEKLPYNEYYE 352
>Os11g0200000 Histone deacetylase family protein
Length = 456
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 143/311 (45%), Gaps = 41/311 (13%)
Query: 19 ERMCAHATPD------GEEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVH 72
R+C + P ++H P R+ + G+ ++ + A + I H
Sbjct: 19 RRVCYYYDPGIAHIKFSDDHVMVPARVAMAHSLVGVYGMLGDMRRLRTRPATEAEIRRFH 78
Query: 73 SQNHIKLMRSISSKEY--DSRRNKIARK------------FNSIY-FNKGSSESAFLAAG 117
S ++ L+R ++ + Y D+ + A F+ ++ + +G + +F AA
Sbjct: 79 SPEYVDLLRDLTPESYFNDAALRQKAEDDHGIGGDDDCPAFDRLWKYCRGYAGGSFAAAR 138
Query: 118 SVIEVAEKVAAGELSSAIALVRPPGHHAEHNEAMGFCLFNNVAIAADYLLNERTDLGIKK 177
++++ A +A S + HHA +A GFC N++ +A + LL ++
Sbjct: 139 ALVDGASDIAI-NWSGGM-------HHASACKATGFCYVNDIVLAINELLGT-----FRR 185
Query: 178 ILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFD----YGSFYPAEGDASYCFIGEGDGKG 233
++ VD D HHG+G Q F RV+ S HR+ + F+P G + IG+G G+
Sbjct: 186 VIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHKDFFPGSGAINE--IGDGAGEH 243
Query: 234 YNINVPWEHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNG 293
Y++NVP + G D Y + ++ E F P+ +++ G D+ GD LGG ++ G
Sbjct: 244 YSVNVPLDAGVRDDV-YHTLFKPIVGKAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRG 302
Query: 294 YALLLTKLLGF 304
+A ++ L GF
Sbjct: 303 HAECVSFLRGF 313
>Os11g0201400 Histone deacetylase family protein
Length = 461
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 54/276 (19%)
Query: 50 GVASRCMIMKAKEAEDKYIASVHSQNHIKLMRSISSKEYDSRRNKIARKFNSIYFNKGSS 109
G SR A EAE I HS ++ L+R ++ + Y FN + +
Sbjct: 59 GDMSRLRTRPATEAE---IRRFHSPEYVDLLRDLTPESY----------FNDAALRQKAE 105
Query: 110 ESAFLAAGSVIEVAEKV-------AAGELSSAIALVRPPG----------HHAEHNEAMG 152
+ + +++ A G L++A ALV HHA +A G
Sbjct: 106 DDHGIGGKDDCPAFDRLWKYCRGYAGGSLAAARALVDGASDIAINWSGGMHHASACKATG 165
Query: 153 FCLFNNVAIAADYLLNERTDLGIKKILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFD-- 210
FC N++ +A + LL ++++ VD D HHG+G Q F RV+ S HR+
Sbjct: 166 FCYVNDIVLAINELLGT-----FRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKI 220
Query: 211 --YGSFYPAEGDASYCFIGEGDGKGYNINVPWEHGKCGDADYIAAWDHVLLPVAEAFNPD 268
+ +F+P G + IG G G+ Y++NVP + G DA E F P+
Sbjct: 221 TPHKNFFPGSGAINE--IGAGAGEHYSVNVPLDAGVRADA-------------MEVFQPE 265
Query: 269 IVLVSAGFDAALGDPLGGCCITPNGYALLLTKLLGF 304
+++ G D+ GD LGG ++ G+A + L GF
Sbjct: 266 AIVLQCGADSLSGDRLGGMELSVRGHAECVGFLRGF 301
>Os01g0586400
Length = 481
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 137/310 (44%), Gaps = 36/310 (11%)
Query: 19 ERMCAHATPD------GEEHPENPERLRAIWRKLSADGVASRCMIMKAKEAEDKYIASVH 72
R+C + P GE H P R+ ++A G+ ++ A +A H
Sbjct: 20 RRVCYYYDPGISTVDYGEGHVMVPHRVTMAHNLVAAYGMLGDMRRLRTAPATAAELADFH 79
Query: 73 SQNHIKLMRSIS--SKEYDSRRNKIARKFNSIYFNKGSS--------------ESAFLAA 116
+ ++ L++ ++ D +AR IY +G + +
Sbjct: 80 DEGYLALLQDLTPDGCGGDDGVGDMARA-RGIYAVEGKGGGRGVDNPVFDRLWDYCLRYS 138
Query: 117 GSVIEVAEKVAAGELSSAIALVRPPG-HHAEHNEAMGFCLFNNVAIAADYLLNERTDLGI 175
G + A + +G ++ IA+ G HHA A GFC N++ +A LL
Sbjct: 139 GGSLAAARTLGSG--TADIAINWSGGMHHACRGGARGFCYVNDIVLAIRELLAH-----F 191
Query: 176 KKILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGSFYPAEGDASYCFIGE-GDGKGY 234
+++L VD DVHHG+G Q F + RV+ S H+ G F+P G + +G+ G G+
Sbjct: 192 RRVLYVDIDVHHGDGVQAAFEASNRVMTVSFHQHG-GGFFPGSG--AVADVGKKGPGRYC 248
Query: 235 NINVPWEHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGY 294
+NVP G GD +Y ++ ++ V E F P+ V++ G D+ GD LG +T G+
Sbjct: 249 ALNVPVSVG-IGDEEYHRLFEPIMARVMEVFQPEAVVLQCGADSLAGDRLGELNLTTRGH 307
Query: 295 ALLLTKLLGF 304
A ++ + F
Sbjct: 308 AQCVSFIRSF 317
>Os04g0409600 Similar to Histone deacetylase
Length = 309
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 177 KILIVDWDVHHGNGTQKMFYSDPRVLFFSVHRFDYGS-FYPAEGDASYCFIGEGDGKGYN 235
++L +D DVHHG+G ++ FY RV+ S H+ YG F+P GD IGE +GK Y
Sbjct: 44 QVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHK--YGDFFFPGTGDIKD--IGEREGKYYA 99
Query: 236 INVPWEHGKCGDADYIAAWDHVLLPVAEAFNPDIVLVSAGFDAALGDPLGGCCITPNGYA 295
IN+P + G D+ + + V+ V E + P +++ G D+ D LG ++ G+A
Sbjct: 100 INIPLKDG-IDDSGFTRLFKTVIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHA 158
Query: 296 LLLTKLLGFAQGRIVMALEGGYNLRSIANSVSACAKVLLGDKFRFDTPD 344
+ + F +V GGY ++A + VLL + + PD
Sbjct: 159 ECVKFVKKFNIPLLVTG-GGGYTKENVARCWAVETGVLLDTELPNEIPD 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,808,622
Number of extensions: 1090272
Number of successful extensions: 2537
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2500
Number of HSP's successfully gapped: 13
Length of query: 695
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 587
Effective length of database: 11,396,689
Effective search space: 6689856443
Effective search space used: 6689856443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)