Os08g0344100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone deacetylase.
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Os08g0344100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone deacetylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.11 | 0.24 | 10.8 | 0.779 | 0.654 | -0.601 | -0.256 | 0.326 | 0.0131 | 16.6 | 84.97 | 1294 | -- | -- |
| 26.09 | 0.238 | 10.8 | 0.753 | 0.654 | -0.6 | -0.249 | -- | 0.00532 | 16.9 | 84 | 1194 | -- | -- |
| 26.06 | 0.238 | 10.8 | 0.78 | 0.654 | -0.624 | -- | 0.372 | 0.0129 | 17 | 85 | 1188 | -- | -- |
| 26.24 | 0.239 | 10.8 | 0.752 | 0.655 | -0.602 | -- | -- | 0.00282 | 17 | 84 | 1188 | -- | -- |
| 47.44 | 0.321 | 10.8 | 0.777 | -- | -0.806 | -- | 0.506 | 0.00522 | -- | 87.58 | 1230 | -- | -- |
| 33.71 | 0.272 | 10.8 | 0.672 | 0.719 | -- | -0.205 | -- | 0.0166 | 16.3 | -- | -- | -- | -- |
| 33.82 | 0.272 | 10.8 | 0.671 | 0.718 | -- | -- | -- | 0.0155 | 16.3 | -- | -- | -- | -- |
| 47.76 | 0.322 | 10.8 | 0.735 | -- | -0.768 | -- | -- | -0.00189 | -- | 87.05 | 1231 | -- | -- |
| 39.84 | 0.294 | 10.8 | -- | 0.64 | -0.539 | -- | -- | -0.0427 | 16.7 | 136 | 1262 | -- | -- |
| 61.52 | 0.366 | 10.8 | 0.642 | -- | -- | -- | -- | -0.00354 | -- | -- | -- | -- | -- |
| 45.67 | 0.316 | 10.8 | -- | 0.705 | -- | -- | -- | -0.0592 | 16.4 | -- | -- | -- | -- |
| 60.63 | 0.363 | 10.8 | -- | -- | -0.75 | -- | -- | -0.0441 | -- | 96 | 1233 | -- | -- |
| 72.39 | 0.397 | 10.8 | -- | -- | -- | -- | -- | -0.0748 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.56 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 2 | 25.56 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 3 | 25.67 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 5 | 25.69 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 7 | 25.72 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 11 | 25.73 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 21 | 25.85 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 58 | 25.95 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 12 | 12 |
| 77 | 26.03 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 90 | 26.07 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 93 | 26.07 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 108 | 26.10 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 166 | 26.20 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 189 | 26.23 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 20 |
| 247 | 26.32 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 4 |
| 259 | 26.34 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 274 | 26.36 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 278 | 26.36 | wind | 5.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 293 | 26.37 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 306 | 26.38 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 313 | 26.38 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 336 | 26.39 | wind | 7.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 380 | 26.42 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 383 | 26.42 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 384 | 26.42 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 438 | 26.48 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 439 | 26.48 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 519 | 26.54 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 520 | 26.54 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 570 | 26.59 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 590 | 26.60 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 605 | 26.61 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 635 | 26.63 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 671 | 26.64 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 774 | 26.69 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 884 | 26.74 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 916 | 26.75 | humidity | 90.0 | 1440 | < th | dose dependent | no | NA | NA |
| 917 | 26.75 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 928 | 26.76 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 932 | 26.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 948 | 26.76 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 951 | 26.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 962 | 26.77 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 963 | 26.77 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |