Os11g0200000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histone deacetylase family protein.
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Os11g0200000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histone deacetylase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.65 | 0.417 | 3.26 | 0.354 | 0.104 | 0.863 | -0.517 | -1.08 | 0.0866 | 23.4 | 22.58 | 725 | -- | -- |
| 79.53 | 0.415 | 3.28 | 0.249 | 0.106 | 1.19 | -0.313 | -- | 0.0507 | 23.5 | 21.38 | 669 | -- | -- |
| 79.5 | 0.415 | 3.27 | 0.317 | 0.0914 | 0.981 | -- | -0.673 | 0.0675 | 23.7 | 22.04 | 609 | -- | -- |
| 79.86 | 0.416 | 3.28 | 0.253 | 0.0961 | 1.29 | -- | -- | 0.0357 | 0.173 | 20.55 | 608 | -- | -- |
| 79.97 | 0.416 | 3.27 | 0.31 | -- | 0.942 | -- | -0.727 | 0.0647 | -- | 22.08 | 559 | -- | -- |
| 92.91 | 0.452 | 3.31 | -0.0263 | 0.0282 | -- | -0.238 | -- | -0.0861 | 0.498 | -- | -- | -- | -- |
| 93.04 | 0.452 | 3.31 | -0.0184 | 0.0557 | -- | -- | -- | -0.0859 | 4.33 | -- | -- | -- | -- |
| 80.31 | 0.417 | 3.28 | 0.245 | -- | 1.2 | -- | -- | 0.0454 | -- | 21.57 | 460 | -- | -- |
| 81.35 | 0.42 | 3.29 | -- | 0.0939 | 1.26 | -- | -- | -0.00638 | 0.102 | 19.86 | 590 | -- | -- |
| 93.21 | 0.451 | 3.31 | -0.0162 | -- | -- | -- | -- | -0.0844 | -- | -- | -- | -- | -- |
| 93.05 | 0.451 | 3.31 | -- | 0.0553 | -- | -- | -- | -0.0839 | 4.34 | -- | -- | -- | -- |
| 81.75 | 0.421 | 3.29 | -- | -- | 1.28 | -- | -- | -0.0177 | -- | 19.91 | 467 | -- | -- |
| 93.21 | 0.451 | 3.31 | -- | -- | -- | -- | -- | -0.0826 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 13 |
| 4 | 76.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 17 | 77.04 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 126 | 77.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 9 |
| 130 | 77.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 158 | 77.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 191 | 77.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 193 | 78.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 216 | 78.10 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 237 | 78.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 272 | 78.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 337 | 78.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 434 | 78.87 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 454 | 78.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 541 | 79.08 | temperature | 20 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 547 | 79.09 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 571 | 79.12 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 575 | 79.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 588 | 79.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 628 | 79.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 631 | 79.18 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 676 | 79.23 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 697 | 79.25 | temperature | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 753 | 79.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 853 | 79.39 | humidity | 90 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 937 | 79.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 975 | 79.50 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 9 |