Os06g0571100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HDA2 (Fragment).
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Os06g0571100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HDA2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.6 | 0.417 | 7.23 | 0.279 | 0.745 | -0.904 | 0.361 | 10.3 | -0.48 | 13.9 | 27.87 | 4163 | -- | -- |
| 91.15 | 0.448 | 7.47 | -1.7 | 0.633 | 0.375 | 0.143 | -- | -0.746 | 13.5 | 27.87 | 4163 | -- | -- |
| 78.92 | 0.414 | 7.23 | 0.279 | 0.739 | -0.912 | -- | 10.5 | -0.484 | 13.8 | 28.07 | 4107 | -- | -- |
| 88.38 | 0.438 | 7.45 | -1.69 | 0.706 | 0.389 | -- | -- | -0.673 | 13.5 | 31.2 | 4785 | -- | -- |
| 111.17 | 0.491 | 7.21 | 0.548 | -- | -1.26 | -- | 12.5 | -0.472 | -- | 28.1 | 3462 | -- | -- |
| 92.84 | 0.452 | 7.47 | -1.66 | 0.717 | -- | 0.226 | -- | -0.749 | 13.7 | -- | -- | -- | -- |
| 93.04 | 0.452 | 7.47 | -1.65 | 0.717 | -- | -- | -- | -0.748 | 13.7 | -- | -- | -- | -- |
| 112.12 | 0.495 | 7.48 | -1.76 | -- | 0.914 | -- | -- | -0.749 | -- | 28.1 | 3462 | -- | -- |
| 128.42 | 0.528 | 7.46 | -- | 0.752 | -0.787 | -- | -- | -0.67 | 14.1 | 35.1 | 47420 | -- | -- |
| 124.31 | 0.521 | 7.48 | -1.68 | -- | -- | -- | -- | -0.764 | -- | -- | -- | -- | -- |
| 165.11 | 0.601 | 7.43 | -- | 0.747 | -- | -- | -- | -0.564 | 13.8 | -- | -- | -- | -- |
| 161.08 | 0.591 | 7.46 | -- | -- | -0.812 | -- | -- | -0.677 | -- | 35.3 | 47049 | -- | -- |
| 199.01 | 0.658 | 7.44 | -- | -- | -- | -- | -- | -0.577 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 16 |
| 7 | 77.31 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 11 | 77.46 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 37 | 77.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 7 |
| 51 | 78.13 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 64 | 78.29 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 65 | 78.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 93 | 78.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 99 | 78.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 100 | 78.50 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 105 | 78.52 | temperature | 25 | 270 | > th | dose dependent | sin | 11 | NA |
| 119 | 78.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 138 | 78.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 142 | 78.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 143 | 78.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 144 | 78.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 150 | 78.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 152 | 78.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 156 | 78.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 168 | 79.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 171 | 79.06 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 173 | 79.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 196 | 79.10 | temperature | 25 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 206 | 79.19 | temperature | 25 | 4320 | > th | dose independent | sin | 10 | NA |
| 243 | 79.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 248 | 79.43 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 250 | 79.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 287 | 79.65 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 306 | 79.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 316 | 79.82 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 321 | 79.86 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 323 | 79.86 | temperature | 30 | 4320 | < th | dose independent | sin | 3 | NA |
| 326 | 79.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 339 | 79.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 340 | 79.90 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 18 |
| 343 | 79.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 348 | 79.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 20 |
| 349 | 79.91 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 369 | 79.96 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 374 | 79.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 12 |
| 378 | 79.97 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 17 |
| 397 | 79.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 409 | 79.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 22 |
| 419 | 79.99 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 499 | 80.02 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 15 |
| 522 | 80.05 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 528 | 80.06 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 9 |
| 643 | 80.14 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 771 | 80.18 | temperature | 25 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 912 | 80.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 994 | 80.58 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |