BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0571100 Os06g0571100|AK100812
(352 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0571100 Similar to HDA2 (Fragment) 691 0.0
Os08g0344100 Similar to Histone deacetylase 89 3e-18
Os06g0583400 Similar to Histone deacetylase (Fragment) 83 4e-16
Os02g0214900 Similar to Histone deacetylase 79 7e-15
Os11g0200000 Histone deacetylase family protein 78 9e-15
Os12g0182700 Histone deacetylase superfamily protein 77 2e-14
Os11g0201400 Histone deacetylase family protein 75 8e-14
Os01g0586400 70 2e-12
>Os06g0571100 Similar to HDA2 (Fragment)
Length = 352
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/337 (100%), Positives = 337/337 (100%)
Query: 16 DPLRRDRILSSKLYLDVPGSKAPVVYSPAYDIAFLGIEKLHPFDSSKWGRICKFLTKEGH 75
DPLRRDRILSSKLYLDVPGSKAPVVYSPAYDIAFLGIEKLHPFDSSKWGRICKFLTKEGH
Sbjct: 16 DPLRRDRILSSKLYLDVPGSKAPVVYSPAYDIAFLGIEKLHPFDSSKWGRICKFLTKEGH 75
Query: 76 LEKNRVVEPLEATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKLLYPF 135
LEKNRVVEPLEATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKLLYPF
Sbjct: 76 LEKNRVVEPLEATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKLLYPF 135
Query: 136 RKQVGGSILSAKLALERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRV 195
RKQVGGSILSAKLALERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRV
Sbjct: 136 RKQVGGSILSAKLALERGWAINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRV 195
Query: 196 MIIDLDAHQGNGHEKDFANDGRVYTLDMYNAGIYPYDHVAKRYIDQKVELVSGTKTEDYL 255
MIIDLDAHQGNGHEKDFANDGRVYTLDMYNAGIYPYDHVAKRYIDQKVELVSGTKTEDYL
Sbjct: 196 MIIDLDAHQGNGHEKDFANDGRVYTLDMYNAGIYPYDHVAKRYIDQKVELVSGTKTEDYL 255
Query: 256 DQLDKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIP 315
DQLDKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIP
Sbjct: 256 DQLDKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIP 315
Query: 316 LLMLTSGGYMKSSARVIADSIINLSNKNLIELGSQLG 352
LLMLTSGGYMKSSARVIADSIINLSNKNLIELGSQLG
Sbjct: 316 LLMLTSGGYMKSSARVIADSIINLSNKNLIELGSQLG 352
>Os08g0344100 Similar to Histone deacetylase
Length = 458
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 125/277 (45%), Gaps = 29/277 (10%)
Query: 75 HLEKNRVVE---PLEATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKL 131
H +R++E P A+ D+ HS+ Y+ L S+ ++++ V + V +
Sbjct: 57 HYGLHRLLELSRPYPASDADIRRFHSDDYVAFLASATGNPALLDARAVK---RFNVGEDC 113
Query: 132 -----LYPFRKQVGGSILSAKLALERGWA---INVGGGFHHCSAEQGGGFCAYADISLCI 183
L+PF + G + A + L RG A +N GG HH + GFC DI L I
Sbjct: 114 PVFDGLFPFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKGEASGFCYVNDIVLAI 173
Query: 184 QFAFVRLNISRVMIIDLDAHQGNGHEKDFANDGRVYTLDMYNAG-IYP-YDHVAK----- 236
++ + RV+ +D+D H G+G E+ F RV T + G +P H+
Sbjct: 174 -LELLKFH-RRVLYVDIDVHHGDGVEEAFFTTNRVMTCSFHKYGDFFPGTGHITDVGAGE 231
Query: 237 -RYIDQKVELVSGTKTEDYLDQLDKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISP 295
++ V L G + + D +K +QP ++V G D L GD LG +S
Sbjct: 232 GKHYALNVPLSDGIDDDTFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSV 291
Query: 296 QGVVIRDEKVFRFAKDQSIPLLMLTSGGY-MKSSARV 331
+G R+ + +IP+++L GGY +++ AR
Sbjct: 292 KGHA----DCLRYLRSFNIPMMVLGGGGYTIRNVARC 324
>Os06g0583400 Similar to Histone deacetylase (Fragment)
Length = 518
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 135/334 (40%), Gaps = 34/334 (10%)
Query: 34 GSKAPVVYSPAYDIAFLGIEKLHPFDSSKWGRICKFLTKEGHLEKNRVVEPLEATKDDLL 93
G+K V Y ++ + HP + L G L++ +V++P A DL
Sbjct: 19 GAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLDQMQVLKPHPARDRDLC 78
Query: 94 VVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKL-----LYPFRKQVGGSILSAKL 148
H++ Y+ L+S V + + + + V + LY F + G + +
Sbjct: 79 RFHADDYVAFLRS---VTPETQQDQIRALKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAV 135
Query: 149 ALERGW--AINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRVMIIDLDAHQGN 206
L G AIN GG HH + GFC DI L I ++ + RV+ +D+D H G+
Sbjct: 136 KLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAI-LELLKYH-QRVLYVDIDIHHGD 193
Query: 207 GHEKDFANDGRVYTLDMYNAGIY--------PYDHVAKRYIDQKVELVSGTKTEDYLDQL 258
G E+ F RV T+ + G Y H +Y V L G E Y
Sbjct: 194 GVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPLDDGIDDESYQSLF 253
Query: 259 DKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKDQSIPLLM 318
+ F+P +V G D L GD LG +S +G + RF + ++PLL+
Sbjct: 254 KPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHA----ECVRFMRSFNVPLLL 309
Query: 319 LTSGGYMKSSARVIADSIINLSNKNLIELGSQLG 352
L GGY +I N++ E G LG
Sbjct: 310 LGGGGY----------TIRNVARCWCYETGVALG 333
>Os02g0214900 Similar to Histone deacetylase
Length = 510
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 21/252 (8%)
Query: 78 KNRVVEPLEATKDDLLVVHSESY---LNSLKSSLKVASIVELPPVAFIPNWLVQQKLLYP 134
K V+ PL A DL HS+ Y L ++ ++ + L P+ V L Y
Sbjct: 67 KMEVLRPLPARGIDLCRFHSDDYVAFLRAVTPETQLGQVRALRRFNIGPDCPVFDGL-YA 125
Query: 135 FRKQVGGSILSAKLALERGW---AINVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLN 191
+ + G+ + A + L G AIN GG HH + GFC DI L I ++L+
Sbjct: 126 YCQTYAGASVGAAVKLNHGTHDIAINWSGGLHHAKKSEASGFCYVNDIVLAI-LELLKLH 184
Query: 192 ISRVMIIDLDAHQGNGHEKDFANDGRVYTLDMYNAGIY--------PYDHVAKRYIDQKV 243
RV+ ID+D H G+G E+ F RV T+ + G Y + +Y V
Sbjct: 185 -ERVLYIDIDIHHGDGVEEAFYTTNRVMTVSFHKFGDYFPGTGDIRDIGYSEGKYYCLNV 243
Query: 244 ELVSGTKTEDYLDQLDKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDE 303
L G + Y + ++P +V G D L GD LG +S +G
Sbjct: 244 PLDDGIDDDSYQSIFKPIISKVMEMYRPGAVVLQCGADSLSGDRLGCFNLSGKGHA---- 299
Query: 304 KVFRFAKDQSIP 315
+ +F + ++P
Sbjct: 300 ECVKFMRSFNVP 311
>Os11g0200000 Histone deacetylase family protein
Length = 456
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 107/258 (41%), Gaps = 45/258 (17%)
Query: 74 GHLEKNRVVEPLEATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKL-- 131
G L R + AT+ ++ HS Y++ L+ +L P ++ + ++QK
Sbjct: 56 GMLGDMRRLRTRPATEAEIRRFHSPEYVDLLR---------DLTPESYFNDAALRQKAED 106
Query: 132 ---------------LYPFRKQVGGSILSAKLALERGW---AINVGGGFHHCSAEQGGGF 173
L+ + + G +A AL G AIN GG HH SA + GF
Sbjct: 107 DHGIGGDDDCPAFDRLWKYCRGYAGGSFAAARALVDGASDIAINWSGGMHHASACKATGF 166
Query: 174 CAYADISLCIQFAFVRLNISRVMIIDLDAHQGNGHEKDFANDGRVYTLDMYNAG-IYPYD 232
C DI L I RV+ +D+DAH G+G + F + RV TL + G I P+
Sbjct: 167 CYVNDIVLAINELLG--TFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPHK 224
Query: 233 HV-------------AKRYIDQKVELVSGTKTEDYLDQLDKALKVAESRFQPQLIVYNAG 279
A + V L +G + + Y + A FQP+ IV G
Sbjct: 225 DFFPGSGAINEIGDGAGEHYSVNVPLDAGVRDDVYHTLFKPIVGKAMEVFQPEAIVLQCG 284
Query: 280 TDILDGDPLGRLKISPQG 297
D L GD LG +++S +G
Sbjct: 285 ADSLSGDRLGGMELSVRG 302
>Os12g0182700 Histone deacetylase superfamily protein
Length = 443
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 129/310 (41%), Gaps = 29/310 (9%)
Query: 53 EKLHPFDSSKWGRICKFLTKEGHLEKNRVVEPLE------ATKDDLLVVHSESYLNSLKS 106
++ HP + + I L K K+R + LE A+ DD+ +VHS SY+ L+
Sbjct: 97 KEAHPETNKRVPAIVDALEKLELTSKHRGSQVLEIQDFQPASLDDIALVHSRSYITGLEK 156
Query: 107 SLKVAS-----IVELPPVAFIPNWLVQQKLLYP------FRKQVGGSILSAKLALERGWA 155
++ AS +E + Q+ LL V S L K L G+A
Sbjct: 157 AMSRASDEGLIFIEGTGPTYATQTTFQECLLSAGAGITLVDSVVAASKLGPKPPL--GFA 214
Query: 156 INVGGGFHHCSAEQGGGFCAYADISLCIQFAFVRLNISRVMIIDLDAHQGNGHEKDFAND 215
+ G HH E GFC + +I++ ++A + + RVMIID D H GNG F D
Sbjct: 215 LVRPPG-HHAVPEGPMGFCVFGNIAVAARYAQNQHGLKRVMIIDFDVHHGNGTCDAFYED 273
Query: 216 GRVYTLDMYNAGIYPYDHVAKRYIDQKVE-------LVSGTKTEDYLDQLDKALKVAESR 268
++ L + G YP + E L G+ D+ + A R
Sbjct: 274 PDIFFLSTHQLGSYPGTGKIHQVGQGNGEGTTLNLPLPGGSGDYAMRCAFDEVIAPAAQR 333
Query: 269 FQPQLIVYNAGTDILDGDPLGRLKISPQGVVIRDEKVFRFAKD-QSIPLLMLTSGGY-MK 326
F+P +I+ +AG D DPL L+ + + ++ A + + GGY ++
Sbjct: 334 FKPDIILVSAGYDAHALDPLAGLQFTTGTFYMLAARIREVAAELCGGRCVFFLEGGYNLE 393
Query: 327 SSARVIADSI 336
S + +AD+
Sbjct: 394 SLSSSVADTF 403
>Os11g0201400 Histone deacetylase family protein
Length = 461
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 104/237 (43%), Gaps = 41/237 (17%)
Query: 87 ATKDDLLVVHSESYLNSLKSSLKVASIVELPPVAFIPNWLVQQKL--------------- 131
AT+ ++ HS Y++ L+ +L P ++ + ++QK
Sbjct: 69 ATEAEIRRFHSPEYVDLLR---------DLTPESYFNDAALRQKAEDDHGIGGKDDCPAF 119
Query: 132 --LYPFRKQVGGSILSAKLALERGW---AINVGGGFHHCSAEQGGGFCAYADISLCIQFA 186
L+ + + G L+A AL G AIN GG HH SA + GFC DI L I
Sbjct: 120 DRLWKYCRGYAGGSLAAARALVDGASDIAINWSGGMHHASACKATGFCYVNDIVLAINEL 179
Query: 187 FVRLNISRVMIIDLDAHQGNGHEKDFANDGRVYTLDMYNAG-IYPYDHVAKRYI--DQKV 243
RV+ +D+DAH G+G + F + RV TL + G I P+ K + +
Sbjct: 180 LG--TFRRVIYVDIDAHHGDGVQNAFLDSNRVMTLSFHRYGKITPH----KNFFPGSGAI 233
Query: 244 ELVSGTKTEDYLDQ--LDKALKV-AESRFQPQLIVYNAGTDILDGDPLGRLKISPQG 297
+ E Y LD ++ A FQP+ IV G D L GD LG +++S +G
Sbjct: 234 NEIGAGAGEHYSVNVPLDAGVRADAMEVFQPEAIVLQCGADSLSGDRLGGMELSVRG 290
>Os01g0586400
Length = 481
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 132 LYPFRKQVGGSILSAKLALERGWA---INVGGGFHHCSAEQGGGFCAYADISLCIQFAFV 188
L+ + + G L+A L G A IN GG HH GFC DI L I+
Sbjct: 130 LWDYCLRYSGGSLAAARTLGSGTADIAINWSGGMHHACRGGARGFCYVNDIVLAIRELLA 189
Query: 189 RLNISRVMIIDLDAHQGNGHEKDFANDGRVYTLDMYN--AGIYPYDHVAK--------RY 238
+ RV+ +D+D H G+G + F RV T+ + G +P RY
Sbjct: 190 --HFRRVLYVDIDVHHGDGVQAAFEASNRVMTVSFHQHGGGFFPGSGAVADVGKKGPGRY 247
Query: 239 IDQKVELVSGTKTEDYLDQLDKALKVAESRFQPQLIVYNAGTDILDGDPLGRLKISPQG 297
V + G E+Y + + FQP+ +V G D L GD LG L ++ +G
Sbjct: 248 CALNVPVSVGIGDEEYHRLFEPIMARVMEVFQPEAVVLQCGADSLAGDRLGELNLTTRG 306
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.139 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,311,023
Number of extensions: 486593
Number of successful extensions: 974
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 9
Length of query: 352
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 250
Effective length of database: 11,709,973
Effective search space: 2927493250
Effective search space used: 2927493250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)