Os02g0215200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histone deacetylase (Fragment).
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Os02g0215200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histone deacetylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 266.53 | 0.767 | 6.26 | 2.94 | 1.09 | -3.17 | -2.16 | 7.66 | 0.707 | 4.74 | 23.35 | 1369 | -- | -- |
| 292.52 | 0.797 | 6.41 | 1.58 | 0.953 | -3.15 | -2.04 | -- | 0.638 | 4.89 | 17.11 | 8623 | -- | -- |
| 276.92 | 0.775 | 6.26 | 2.92 | 1.13 | -3.25 | -- | 7.61 | 0.716 | 4.09 | 23.34 | 1341 | -- | -- |
| 303.41 | 0.811 | 6.39 | 1.64 | 0.971 | -3.25 | -- | -- | 0.706 | 4.44 | 17.2 | 8455 | -- | -- |
| 311.71 | 0.822 | 6.26 | 3.06 | -- | -3.37 | -- | 7.88 | 0.784 | -- | 23.1 | 1733 | -- | -- |
| 528.99 | 1.08 | 6.64 | -0.19 | 0.836 | -- | -2.63 | -- | -0.416 | 5.54 | -- | -- | -- | -- |
| 544.76 | 1.09 | 6.64 | -0.204 | 0.829 | -- | -- | -- | -0.407 | 4.88 | -- | -- | -- | -- |
| 344.69 | 0.865 | 6.39 | 1.73 | -- | -3.34 | -- | -- | 0.775 | -- | 17.14 | 9066 | -- | -- |
| 337.09 | 0.855 | 6.5 | -- | 1.03 | -2.2 | -- | -- | 0.189 | 4.35 | 22.2 | 6990 | -- | -- |
| 581.02 | 1.13 | 6.65 | -0.173 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 545.86 | 1.09 | 6.63 | -- | 0.825 | -- | -- | -- | -0.384 | 4.89 | -- | -- | -- | -- |
| 375.61 | 0.903 | 6.54 | -- | -- | -2.21 | -- | -- | 0.0944 | -- | 22.2 | 6204 | -- | -- |
| 581.81 | 1.13 | 6.64 | -- | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 10 | 272.55 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 17 | 272.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 19 | 272.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 18 |
| 52 | 273.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 105 | 274.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 112 | 274.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 132 | 274.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 137 | 274.95 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 152 | 275.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 169 | 275.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 337 | 284.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 360 | 284.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 387 | 285.57 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 394 | 285.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 430 | 286.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 461 | 287.29 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 475 | 287.57 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 483 | 287.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 513 | 288.31 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 708 | 291.22 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 3 |
| 732 | 291.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 780 | 292.34 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 945 | 294.61 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 973 | 294.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 13 |