BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0106900 Os11g0106900|J065029C07
(156 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0106200 Similar to LOB domain protein 4 254 3e-68
Os11g0106900 Lateral organ boundaries, LOB domain containin... 254 3e-68
Os05g0346800 Similar to LOB domain protein 3 169 9e-43
Os01g0169400 Similar to LOB domain protein 25 142 1e-34
Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LE... 138 2e-33
Os01g0825000 Similar to LOB domain protein 12 137 2e-33
Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein 133 5e-32
Os05g0165450 Lateral organ boundaries, LOB domain containin... 130 3e-31
Os03g0246900 Similar to LOB domain protein 16 122 1e-28
Os03g0287400 Similar to LOB domain protein 4 122 1e-28
Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LE... 122 1e-28
Os03g0149100 Adventitious rootless1 (LOB domain protein) 121 2e-28
Os03g0149000 Similar to LOB domain protein 31 121 2e-28
Os02g0820500 Similar to LOB domain protein 17 119 6e-28
Os10g0162600 Lateral organ boundaries, LOB domain containin... 116 6e-27
Os08g0563400 Similar to LOB domain protein 17 116 8e-27
Os01g0772100 Lateral organ boundaries, LOB domain containin... 96 8e-21
Os08g0402100 Lateral organ boundaries, LOB domain containin... 87 6e-18
Os01g0572800 80 9e-16
Os01g0571500 79 2e-15
Os02g0713100 77 5e-15
Os08g0517100 Similar to ASYMMETRIC LEAVES2 protein (LOB dom... 69 1e-12
Os05g0123000 63 7e-11
>Os12g0106200 Similar to LOB domain protein 4
Length = 156
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 126/156 (80%)
Query: 1 MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPP 60
MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPP
Sbjct: 1 MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPP 60
Query: 61 QRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMXXXXXXXXXXXXXXXXXXXX 120
QRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM
Sbjct: 61 QRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQLALAHAETAALQLQLQQQH 120
Query: 121 XXXXXXXXXXCILENAAAHHQLMLQEAFLKKESMWT 156
CILENAAAHHQLMLQEAFLKKESMWT
Sbjct: 121 QDQDDHHHQQCILENAAAHHQLMLQEAFLKKESMWT 156
>Os11g0106900 Lateral organ boundaries, LOB domain containing protein
Length = 156
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 126/156 (80%), Positives = 126/156 (80%)
Query: 1 MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPP 60
MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPP
Sbjct: 1 MAGSGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPP 60
Query: 61 QRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMXXXXXXXXXXXXXXXXXXXX 120
QRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM
Sbjct: 61 QRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQMQLALAHAETAALQLQLQQQH 120
Query: 121 XXXXXXXXXXCILENAAAHHQLMLQEAFLKKESMWT 156
CILENAAAHHQLMLQEAFLKKESMWT
Sbjct: 121 QDQDDHHHQQCILENAAAHHQLMLQEAFLKKESMWT 156
>Os05g0346800 Similar to LOB domain protein 3
Length = 200
Score = 169 bits (427), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 76/96 (79%), Positives = 87/96 (90%)
Query: 5 GSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPD 64
G G+PCASCKLLRRRCT +C+FAP+FPA++ +FA+VH+VFGASNVSKML ++P QR D
Sbjct: 2 GGGSPCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQRGD 61
Query: 65 AVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM 100
AVSSLVYEANARMRDPVYGCV AISFLQNQVSQLQM
Sbjct: 62 AVSSLVYEANARMRDPVYGCVGAISFLQNQVSQLQM 97
>Os01g0169400 Similar to LOB domain protein 25
Length = 251
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 78/95 (82%)
Query: 5 GSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPD 64
G+G+PCA+CK LRR+C CVFAPYFP EE Q+FA VH+VFGASNV+K+L ++ P QR D
Sbjct: 26 GAGSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQRED 85
Query: 65 AVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
AVSSL YEA AR++DPVYGCV AIS LQ QV +LQ
Sbjct: 86 AVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQ 120
>Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 269
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 76/95 (80%)
Query: 5 GSGTPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPD 64
G+G+PCA+CK LRR+C +CVFAPYFP + Q+F VHRVFGASNV+K+L ++ P QR D
Sbjct: 34 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQRED 93
Query: 65 AVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
AV+SL YEA+ R+RDPVYGCVA IS LQ + QLQ
Sbjct: 94 AVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQ 128
>Os01g0825000 Similar to LOB domain protein 12
Length = 251
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 73/92 (79%)
Query: 8 TPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVS 67
TPCA+CKLLRRRC EC FAPYF E +FA VH+VFGASNVSKMLL+V +R DA S
Sbjct: 58 TPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAAS 117
Query: 68 SLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
SLVYEAN R+RDPVYGC+ AIS LQ QV+ L+
Sbjct: 118 SLVYEANLRLRDPVYGCMGAISMLQQQVNALE 149
>Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein
Length = 340
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 75/91 (82%)
Query: 9 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
PCA+CKLLRR+CT CVFAPYFP ++ +FA VH+VFGASNV+K+L D+ P QR DAV+S
Sbjct: 40 PCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPEQREDAVNS 99
Query: 69 LVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
L YEA AR+RDPVYGCVA IS LQ ++ Q++
Sbjct: 100 LAYEAEARLRDPVYGCVAYISILQLRIKQVR 130
>Os05g0165450 Lateral organ boundaries, LOB domain containing protein
Length = 241
Score = 130 bits (328), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 71/92 (77%)
Query: 8 TPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVS 67
TPCA+CKLLRRRC EC F+PYF E +FA VH+VFGASNVSKMLL+V QR DA +
Sbjct: 60 TPCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAAN 119
Query: 68 SLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
SLVYEAN R+RDPVYGC+ AI LQ QV L+
Sbjct: 120 SLVYEANLRLRDPVYGCMGAILTLQQQVQALE 151
>Os03g0246900 Similar to LOB domain protein 16
Length = 275
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 10 CASCKLLRRRCTSECVFAPYFPAEE-AQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
C +CK LRR+C S C+FAPYF +E+ A FA VH+VFGASNVSK+LL +P +RPDAV +
Sbjct: 38 CGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVT 97
Query: 69 LVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
+ YEA AR+RDPVYGCVA I LQ QV LQ
Sbjct: 98 ICYEAQARLRDPVYGCVAHIFALQQQVVNLQ 128
>Os03g0287400 Similar to LOB domain protein 4
Length = 239
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 69/93 (74%)
Query: 8 TPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVS 67
+PCA+CK+LRRRC CV APYFP E +F HRVFGASN+ K+L ++P R DAVS
Sbjct: 62 SPCAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADAVS 121
Query: 68 SLVYEANARMRDPVYGCVAAISFLQNQVSQLQM 100
S+VYEA AR+RDPVYGC A+ LQ + ++L++
Sbjct: 122 SMVYEAEARLRDPVYGCAGAVCRLQKEANELKV 154
>Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 279
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 65/81 (80%)
Query: 9 PCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
PCA+CK LRR+C +CVFAPYFP + Q+F VHRVFGASNV+K+L ++ P QR DAV+S
Sbjct: 39 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 98
Query: 69 LVYEANARMRDPVYGCVAAIS 89
L YEA+ R+RDPVYGCV IS
Sbjct: 99 LAYEADMRLRDPVYGCVGVIS 119
>Os03g0149100 Adventitious rootless1 (LOB domain protein)
Length = 259
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/97 (57%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 4 SGSGTPCASCKLLRRRCTSECVFAPYFPAEE-AQRFAMVHRVFGASNVSKMLLDVPPPQR 62
+G G+PC +CK LRR+C CVFAPYF E+ A FA +H+VFGASNVSK+L +P R
Sbjct: 2 TGFGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADR 61
Query: 63 PDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
P+A ++ YEA AR+RDP+YGCVA I LQ QV LQ
Sbjct: 62 PEAAVTISYEAQARLRDPIYGCVAHIFALQQQVMTLQ 98
>Os03g0149000 Similar to LOB domain protein 31
Length = 185
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Query: 1 MAGSG----SGTPCASCKLLRRRCTSECVFAPYFPAEE-AQRFAMVHRVFGASNVSKMLL 55
MA SG G+PC +CK LRR+C +ECVFAPYF AE+ A +FA +H+VFGASN +K+L
Sbjct: 1 MASSGVGGVPGSPCGACKFLRRKCAAECVFAPYFCAEDGAAQFAAIHKVFGASNAAKLLQ 60
Query: 56 DVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM 100
V P R + +++ YEA AR+RDPVYGCVA I LQ Q++ LQ+
Sbjct: 61 QVAPGDRSEVAATVTYEAQARLRDPVYGCVAHIFALQQQLATLQV 105
>Os02g0820500 Similar to LOB domain protein 17
Length = 216
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Query: 8 TPCASCKLLRRRCTSECVFAPYFPAEE-AQRFAMVHRVFGASNVSKMLLDVPPPQRPDAV 66
+PC +CK LRRRC ECVFAPYF +E+ A RFA +H+VFGASN SK+L +P R +AV
Sbjct: 20 SPCGACKFLRRRCVPECVFAPYFSSEQGAARFAAIHKVFGASNASKLLSHLPVADRCEAV 79
Query: 67 SSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
++ YEA AR+RDPVYGCVA I LQ QV+ LQ
Sbjct: 80 VTITYEAQARLRDPVYGCVAQIFALQQQVAILQ 112
>Os10g0162600 Lateral organ boundaries, LOB domain containing protein
Length = 269
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
Query: 9 PCASCKLLRRRCTSECVFAPYFPAEE-AQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVS 67
PC +CK LRR+C C+FAPYF +E A FA VH+VFGASNVSK+L +P +R DAV
Sbjct: 33 PCGACKFLRRKCVQGCIFAPYFDSEAGAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVV 92
Query: 68 SLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
++ YEA AR+RDPVYGCVA I LQ+QV+ LQ
Sbjct: 93 TICYEAQARLRDPVYGCVAHIFHLQHQVAGLQ 124
>Os08g0563400 Similar to LOB domain protein 17
Length = 215
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 4 SGSGTPCASCKLLRRRCTSECVFAPYFPAEE-AQRFAMVHRVFGASNVSKMLLDVPPPQR 62
+G G+PC +CK LRR+C CVFAPYF E+ A FA +H+VFGASN SK+L+ +P R
Sbjct: 2 TGLGSPCGACKFLRRKCVKGCVFAPYFCHEQGAAHFAAIHKVFGASNASKILMHLPVSDR 61
Query: 63 PDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
+A ++ YEA AR+RDP+YGCVA I LQ QV LQ
Sbjct: 62 CEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQ 98
>Os01g0772100 Lateral organ boundaries, LOB domain containing protein
Length = 175
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 4 SGSGTPCASCKLLRRRCTSECVFAPYFPAEEAQR----------------FAMVHRVFGA 47
+G G PC +CK LRRRC CVFAP+F FA VHRVFGA
Sbjct: 33 AGPGAPCGACKFLRRRCVPGCVFAPHFSGCGGSGVGAGVGGRGRERGAAEFAAVHRVFGA 92
Query: 48 SNVSKMLLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQ 97
SNV+K+L VP R +A ++ YEA AR+ DPVYG V I LQ+QV+
Sbjct: 93 SNVAKLLSRVPAALRREAARTVCYEAQARIADPVYGSVGTILALQHQVAH 142
>Os08g0402100 Lateral organ boundaries, LOB domain containing protein
Length = 426
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 10 CASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSL 69
CA+CK RR+C +C APYFPA++ +RF HR+FG SN+ K L + P DA+ +L
Sbjct: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
Query: 70 VYEANARMRDPVYGCVAAISFLQNQV 95
+Y+A R DPV GC I L+ Q+
Sbjct: 118 IYQAEMRAHDPVGGCCRVICDLERQL 143
>Os01g0572800
Length = 251
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 10 CASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSL 69
CA+CK RRRCT EC A YFPA + RF HR+FG N+ +++ R DA+ S+
Sbjct: 41 CAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSV 100
Query: 70 VYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
VYE++A + DP+ G + L ++++L+
Sbjct: 101 VYESDAWVIDPLGGAAGIVKGLSQELARLK 130
>Os01g0571500
Length = 356
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 10 CASCKLLRRRCTSECVFAPYFPA-EEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
CA+C+ L R C EC+ APYFPA + +F VHR+F +NV +M+ + +R D +++
Sbjct: 175 CAACRYLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAA 234
Query: 69 LVYEANARMRDPVYGCVAAISFLQNQVSQLQM 100
+VYEA+A RDP YG + L N+++++++
Sbjct: 235 IVYEADAWARDPRYGVAGVVRSLTNELARVRL 266
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 10 CASCKLLRRRCT-SECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSS 68
CA+CK LRR C+ EC AP+FPA + +R V RVFG V ++ P D +SS
Sbjct: 23 CAACKFLRRACSPEECRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDILSS 82
Query: 69 LVYEANARMRDPVYGCVAAISFLQNQVS 96
+VYEA A RDPV+G + L+ ++
Sbjct: 83 IVYEAEAWGRDPVWGPTGVVGALELEIG 110
>Os02g0713100
Length = 95
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 40/47 (85%)
Query: 54 LLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQM 100
L ++ Q+ DAVSSLVYEAN RMRDPVYGCV AISF+QNQVSQLQM
Sbjct: 8 LQELLARQQGDAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQM 54
>Os08g0517100 Similar to ASYMMETRIC LEAVES2 protein (LOB domain protein 36)
Length = 95
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 10 CASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKML 54
CA+C+ LRRRC +CV AP+FPA R+A VHRVFGASNV+++L
Sbjct: 48 CAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
>Os05g0123000
Length = 145
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 54 LLDVPPPQRPDAVSSLVYEANARMRDPVYGCVAAISFLQNQVSQLQ 99
L ++P QR DAVSS+VYEANAR+RDPVYGC AI LQ QV+ L+
Sbjct: 12 LQELPEEQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNDLK 57
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,544,699
Number of extensions: 145968
Number of successful extensions: 633
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 25
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)