Os12g0106200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LOB domain protein 4.
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Os12g0106200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LOB domain protein 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 125.38 | 0.526 | 7.24 | -1.37 | 3.13 | -0.27 | 0.842 | -2.49 | -0.0978 | 6.47 | 70 | 4451 | -- | -- |
| 132.29 | 0.536 | 7.22 | -1.28 | 3.08 | -0.454 | 0.921 | -- | -0.0285 | 6.46 | 71 | 12364 | -- | -- |
| 126.1 | 0.523 | 7.24 | -1.35 | 3.12 | -0.257 | -- | -2.54 | -0.107 | 6.44 | 69 | 4944 | -- | -- |
| 133.86 | 0.539 | 7.23 | -1.27 | 3.1 | -0.514 | -- | -- | -0.00584 | 6.46 | 72.13 | 13287 | -- | -- |
| 594.78 | 1.14 | 7.15 | -1.33 | -- | -1.67 | -- | -1.04 | 0.641 | -- | 80 | 6338 | -- | -- |
| 136.68 | 0.548 | 7.24 | -1.24 | 3.13 | -- | 0.866 | -- | -0.0939 | 6.48 | -- | -- | -- | -- |
| 138.54 | 0.551 | 7.25 | -1.23 | 3.13 | -- | -- | -- | -0.0969 | 6.46 | -- | -- | -- | -- |
| 596.49 | 1.14 | 7.15 | -1.31 | -- | -1.83 | -- | -- | 0.676 | -- | 80 | 6346 | -- | -- |
| 175.33 | 0.617 | 7.19 | -- | 3.11 | -0.439 | -- | -- | 0.143 | 6.48 | 74 | 13053 | -- | -- |
| 647.71 | 1.19 | 7.31 | -1.15 | -- | -- | -- | -- | -0.0314 | -- | -- | -- | -- | -- |
| 178.64 | 0.625 | 7.21 | -- | 3.11 | -- | -- | -- | 0.0405 | 6.48 | -- | -- | -- | -- |
| 614.39 | 1.15 | 7.07 | -- | -- | -2.47 | -- | -- | 1.06 | -- | 79 | 4936 | -- | -- |
| 682.85 | 1.22 | 7.28 | -- | -- | -- | -- | -- | 0.0967 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 119.89 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 4 | 120.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 7 | 120.33 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 10 | 120.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 15 | 120.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 16 | 120.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 17 | 120.69 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 5 |
| 19 | 120.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 24 | 120.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 25 | 120.93 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 30 | 121.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 31 | 121.04 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 33 | 121.10 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 34 | 121.10 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 14 |
| 43 | 121.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 44 | 121.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 54 | 121.43 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 56 | 121.50 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 70 | 121.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 73 | 121.70 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 75 | 121.72 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 76 | 121.72 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 80 | 121.75 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 82 | 121.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 84 | 121.79 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 85 | 121.79 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 91 | 121.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 101 | 121.88 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 107 | 121.90 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 109 | 121.90 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 111 | 121.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 115 | 121.91 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 138 | 122.02 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 152 | 122.06 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 163 | 122.11 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 170 | 122.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 183 | 122.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 184 | 122.19 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 191 | 122.20 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 215 | 122.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 216 | 122.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 217 | 122.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 218 | 122.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 219 | 122.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 15 |
| 220 | 122.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 238 | 122.32 | humidity | 90.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 242 | 122.32 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 19 |
| 265 | 122.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 276 | 122.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 295 | 122.45 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 304 | 122.47 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 315 | 122.50 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 322 | 122.51 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 338 | 122.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 350 | 122.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 353 | 122.60 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 4 | NA |
| 368 | 122.63 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 376 | 122.65 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 4 | NA |
| 379 | 122.65 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 4 | NA |
| 401 | 122.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 23 | 21 |
| 406 | 122.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 23 | 21 |
| 416 | 122.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 23 | 21 |
| 425 | 122.75 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 440 | 122.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 447 | 122.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 450 | 122.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 476 | 122.85 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 2 | 11 |
| 486 | 122.87 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 7 |
| 494 | 122.87 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 7 |
| 505 | 122.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 509 | 122.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 556 | 122.98 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 560 | 122.98 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 2 | 10 |
| 635 | 123.08 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 12 |
| 639 | 123.08 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 12 |
| 714 | 123.18 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 775 | 123.25 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 4 | NA |
| 843 | 123.32 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 11 |
| 862 | 123.34 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 900 | 123.37 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 959 | 123.44 | humidity | 90.0 | 14400 | < th | dose independent | sin | 0 | NA |