Os02g0820500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LOB domain protein 17.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0820500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to LOB domain protein 17.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 240.93 | 0.729 | 3 | 0.531 | 0.301 | -0.499 | 0.605 | 0.651 | 0.206 | 9.6 | 24.1 | 1522 | -- | -- |
| 241.58 | 0.724 | 3.03 | 0.301 | 0.303 | -0.46 | 0.596 | -- | 0.135 | 9.58 | 24.2 | 1524 | -- | -- |
| 242.23 | 0.725 | 3 | 0.552 | 0.299 | -0.501 | -- | 0.65 | 0.208 | 9.17 | 24.18 | 1509 | -- | -- |
| 242.71 | 0.726 | 3.03 | 0.324 | 0.305 | -0.449 | -- | -- | 0.142 | 8.83 | 24.07 | 1379 | -- | -- |
| 242.6 | 0.725 | 3.01 | 0.483 | -- | -0.623 | -- | 0.373 | 0.224 | -- | 25.89 | 872 | -- | -- |
| 249.92 | 0.741 | 3.07 | 0.119 | 0.303 | -- | 0.6 | -- | -0.0414 | 9.79 | -- | -- | -- | -- |
| 251.25 | 0.742 | 3.07 | 0.14 | 0.304 | -- | -- | -- | -0.0411 | 9.41 | -- | -- | -- | -- |
| 242.85 | 0.726 | 3.01 | 0.376 | -- | -0.617 | -- | -- | 0.235 | -- | 25.8 | 861 | -- | -- |
| 245.12 | 0.729 | 3.04 | -- | 0.298 | -0.374 | -- | -- | 0.0879 | 8.86 | 23.8 | 1341 | -- | -- |
| 256.66 | 0.749 | 3.08 | 0.138 | -- | -- | -- | -- | -0.0401 | -- | -- | -- | -- | -- |
| 251.76 | 0.742 | 3.07 | -- | 0.304 | -- | -- | -- | -0.0568 | 9.38 | -- | -- | -- | -- |
| 245.04 | 0.729 | 3.04 | -- | -- | -0.532 | -- | -- | 0.119 | -- | 25.32 | 846 | -- | -- |
| 257.16 | 0.749 | 3.08 | -- | -- | -- | -- | -- | -0.0554 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 227.90 | temperature | 20.0 | 90 | < th | dose independent | rect. | 18 | 5 |
| 2 | 228.17 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 10 | 229.55 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 18 | 3 |
| 30 | 230.85 | temperature | 20.0 | 90 | < th | dose independent | rect. | 7 | 16 |
| 33 | 231.07 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 45 | 231.38 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 46 | 231.41 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 51 | 231.65 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 18 | 5 |
| 64 | 232.22 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 3 |
| 66 | 232.30 | temperature | 20.0 | 270 | > th | dose independent | sin | 20 | NA |
| 73 | 232.50 | temperature | 20.0 | 270 | < th | dose independent | sin | 20 | NA |
| 172 | 234.43 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 7 | 15 |
| 220 | 234.97 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 9 |
| 318 | 236.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 12 |
| 362 | 236.88 | temperature | 20.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 386 | 237.18 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 396 | 237.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 10 |
| 399 | 237.23 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 7 |
| 407 | 237.26 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 488 | 237.95 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 7 |
| 515 | 238.19 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 533 | 238.29 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 542 | 238.33 | temperature | 25.0 | 30 | > th | dose independent | rect. | 14 | 22 |
| 566 | 238.47 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 14 | 22 |
| 585 | 238.54 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 596 | 238.59 | radiation | 10.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 613 | 238.63 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 15 |
| 624 | 238.72 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 9 | 4 |
| 636 | 238.80 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 11 |
| 646 | 238.84 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 3 |
| 683 | 238.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 9 |
| 690 | 239.00 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 4 |
| 732 | 239.10 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 735 | 239.10 | wind | 1.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 737 | 239.12 | radiation | 40.0 | 10 | > th | dose independent | sin | 8 | NA |
| 760 | 239.22 | radiation | 10.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 784 | 239.32 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 785 | 239.32 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 8 | 3 |
| 789 | 239.34 | temperature | 25.0 | 30 | > th | dose independent | rect. | 16 | 20 |
| 796 | 239.37 | humidity | 90.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 805 | 239.39 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 811 | 239.41 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 813 | 239.41 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 839 | 239.54 | radiation | 40.0 | 10 | < th | dose independent | rect. | 24 | 11 |
| 864 | 239.63 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 873 | 239.67 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 900 | 239.73 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 910 | 239.77 | wind | 3.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 911 | 239.77 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 914 | 239.78 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 930 | 239.83 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 936 | 239.85 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 948 | 239.87 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 953 | 239.88 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 956 | 239.88 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 14 | 22 |
| 959 | 239.90 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 960 | 239.90 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 963 | 239.90 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 965 | 239.90 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 1 |
| 966 | 239.90 | temperature | 10.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 968 | 239.90 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 971 | 239.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 983 | 239.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 19 |