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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0346800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LOB domain protein 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.57 (0.0335) R2 : 0.0997
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.605 (0.0851) R2dC : 0.0997 R2C : 0.0997
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000342 (0.0706) R2dN8 : 5.98e-08 R2N8 : -5.49e-05
σ : 0.633
deviance : 183.11
__
_____
C
peak time of C : 15.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.54 0.603 4.53 -0.181 0.674 -0.517 -0.0955 0.428 0.121 16 21.4 409 -- --
165.14 0.599 4.55 -0.278 0.671 -0.53 0.0852 -- 0.088 16.1 21.4 435 -- --
164.54 0.597 4.54 -0.18 0.673 -0.524 -- 0.406 0.122 16 21.38 421 -- --
165.13 0.599 4.55 -0.294 0.672 -0.538 -- -- 0.0966 16.1 21.37 435 -- --
185.83 0.635 4.52 -0.189 -- -0.494 -- 0.491 0.149 -- 22.4 852 -- --
177.27 0.624 4.58 -0.471 0.595 -- 0.0483 -- -0.0524 15.7 -- -- -- --
177.28 0.624 4.58 -0.471 0.596 -- -- -- -0.0521 15.7 -- -- -- --
186.36 0.636 4.54 -0.344 -- -0.47 -- -- 0.0938 -- 22.38 869 -- --
167.29 0.602 4.53 -- 0.67 -0.587 -- -- 0.139 16.1 21.4 463 -- --
196.9 0.656 4.58 -0.495 -- -- -- -- -0.0679 -- -- -- -- --
183.11 0.633 4.57 -- 0.605 -- -- -- 0.000342 15.7 -- -- -- --
189.2 0.641 4.53 -- -- -0.539 -- -- 0.149 -- 22.3 877 -- --
203.38 0.666 4.56 -- -- -- -- -- -0.013 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.30 temperature 20 90 > th dose dependent rect. 23 10
3 161.81 temperature 25 30 > th dose independent rect. 24 9
14 163.25 temperature 20 90 > th dose dependent rect. 5 4
15 163.28 temperature 25 10 > th dose independent rect. 6 4
17 163.53 temperature 20 270 > th dose dependent rect. 5 1
36 164.42 temperature 20 720 > th dose dependent rect. 21 10
44 164.69 temperature 10 270 > th dose dependent rect. 20 12
49 164.86 temperature 10 720 > th dose dependent rect. 21 10
55 164.94 temperature 20 90 > th dose dependent rect. 20 13
66 165.38 temperature 20 720 > th dose dependent rect. 21 4
68 165.43 humidity 80 720 < th dose dependent rect. 21 10
84 165.62 temperature 20 270 > th dose independent rect. 5 1
89 165.72 temperature 30 720 < th dose dependent rect. 1 1
92 165.76 temperature 20 720 > th dose dependent rect. 21 6
118 166.05 radiation 20 10 < th dose independent rect. 6 3
122 166.08 temperature 20 720 > th dose independent rect. 21 4
128 166.10 humidity 70 90 > th dose independent rect. 23 10
136 166.19 humidity 80 90 < th dose dependent rect. 21 10
140 166.27 temperature 10 720 > th dose dependent rect. 21 3
143 166.37 temperature 20 270 > th dose independent rect. 4 3
151 166.43 radiation 1 1440 > th dose independent rect. 4 1
161 166.43 radiation 1 1440 > th dose dependent rect. 4 1
189 166.58 temperature 25 270 < th dose dependent rect. 24 23
198 166.63 temperature 25 270 < th dose dependent rect. 21 23
207 166.74 temperature 25 720 < th dose dependent rect. 23 3
208 166.74 temperature 25 270 < th dose dependent rect. 14 21
213 166.78 temperature 10 10 > th dose dependent rect. 23 23
218 166.81 temperature 20 720 > th dose independent rect. 21 10
222 166.82 temperature 25 720 < th dose dependent rect. 21 5
224 166.82 temperature 25 270 < th dose dependent rect. 11 23
232 166.85 radiation 20 720 > th dose independent rect. 16 16
235 166.87 temperature 25 270 < th dose dependent rect. 17 17
244 166.91 temperature 15 10 > th dose dependent rect. 11 23
248 166.93 temperature 25 10 > th dose dependent rect. 3 6
251 166.94 wind 9 14400 < th dose independent rect. 7 3
264 166.99 temperature 20 720 > th dose independent rect. 21 12
265 166.99 temperature 25 270 < th dose dependent rect. 21 13
266 166.99 temperature 25 270 < th dose dependent rect. 17 23
267 167.01 temperature 25 270 < th dose dependent sin 8 NA
268 167.01 temperature 25 270 < th dose dependent rect. 3 23
279 167.07 atmosphere 1000 1440 < th dose dependent rect. 5 6
283 167.08 temperature 15 30 > th dose dependent rect. 6 19
285 167.09 atmosphere 1000 1440 > th dose independent rect. 8 1
294 167.10 temperature 30 30 < th dose dependent rect. 7 23
296 167.13 temperature 25 270 < th dose dependent no NA NA
298 167.13 radiation 20 720 > th dose dependent rect. 16 16
304 167.15 wind 3 1440 > th dose independent rect. 13 3
328 167.21 atmosphere 1000 1440 < th dose dependent rect. 7 3
331 167.22 radiation 30 10 < th dose independent rect. 23 11
334 167.22 temperature 20 10 > th dose dependent rect. 13 21
338 167.24 temperature 20 720 > th dose independent rect. 21 17
346 167.27 humidity 80 1440 > th dose independent rect. 24 2
352 167.28 humidity 80 90 < th dose dependent rect. 20 12
367 167.32 temperature 20 10 > th dose independent rect. 13 12
370 167.32 temperature 25 720 < th dose dependent rect. 17 14
383 167.36 temperature 20 720 > th dose independent rect. 21 19
384 167.36 temperature 20 720 > th dose dependent sin 10 NA
385 167.36 temperature 25 720 < th dose dependent sin 12 NA
390 167.36 temperature 25 720 < th dose dependent rect. 19 10
391 167.37 wind 3 1440 < th dose independent rect. 15 1
401 167.39 wind 3 1440 > th dose independent rect. 15 1
423 167.43 humidity 80 90 < th dose independent rect. 1 6
428 167.44 temperature 20 270 > th dose dependent sin 8 NA
434 167.45 wind 3 1440 < th dose independent rect. 13 3
450 167.49 atmosphere 1000 1440 < th dose independent rect. 7 3
456 167.50 humidity 70 30 > th dose independent rect. 6 3
457 167.50 atmosphere 1000 1440 < th dose independent rect. 5 5
461 167.51 temperature 20 270 > th dose independent rect. 3 21
497 167.56 temperature 25 270 < th dose dependent rect. 6 23
513 167.60 radiation 20 10 < th dose independent rect. 6 10
514 167.60 humidity 70 30 < th dose independent rect. 16 17
533 167.63 atmosphere 1000 1440 > th dose independent rect. 5 4
535 167.63 temperature 20 270 > th dose independent rect. 4 12
543 167.65 temperature 20 30 > th dose dependent sin 7 NA
547 167.66 wind 5 1440 < th dose dependent rect. 13 3
552 167.68 humidity 70 90 > th dose independent sin 10 NA
554 167.68 atmosphere 1000 1440 > th dose independent rect. 2 9
560 167.69 temperature 20 720 < th dose independent rect. 23 3
565 167.69 temperature 10 270 > th dose dependent rect. 2 22
573 167.71 temperature 20 270 > th dose independent rect. 11 22
577 167.72 radiation 10 270 < th dose independent rect. 5 2
627 167.81 humidity 90 14400 < th dose independent rect. 5 1
651 167.86 wind 3 1440 > th dose independent rect. 13 1
678 167.92 humidity 80 720 < th dose independent rect. 1 1
684 167.92 humidity 80 720 < th dose dependent rect. 1 1
725 167.98 humidity 70 90 > th dose independent rect. 20 13
729 167.98 temperature 15 90 > th dose dependent rect. 5 22
737 167.99 temperature 30 10 < th dose dependent rect. 18 18
756 168.02 temperature 25 30 > th dose independent rect. 23 17
767 168.03 wind 3 1440 < th dose dependent rect. 15 1
796 168.08 temperature 10 720 > th dose dependent rect. 2 5
800 168.08 temperature 30 10 < th dose dependent rect. 14 23
835 168.14 wind 1 1440 > th dose dependent rect. 13 3
847 168.17 humidity 80 720 < th dose independent rect. 23 8
867 168.19 temperature 15 30 > th dose dependent rect. 17 23
871 168.20 radiation 20 10 < th dose independent rect. 6 8
922 168.27 humidity 90 43200 < th dose independent rect. 13 1
928 168.28 temperature 20 720 > th dose independent sin 9 NA
953 168.31 humidity 70 90 < th dose independent rect. 19 12
956 168.31 radiation 10 4320 < th dose dependent rect. 2 3
982 168.35 humidity 90 14400 < th dose independent rect. 17 13
983 168.35 temperature 20 10 > th dose independent rect. 13 21
984 168.35 radiation 10 4320 < th dose dependent rect. 4 1
991 168.35 temperature 30 10 < th dose dependent rect. 1 23