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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0402100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lateral organ boundaries, LOB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0145) R2 : 0.00044
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0137 (0.0306) R2dN8 : 0.000569 R2N8 : 0.00044
σ : 0.274
deviance : 34.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31 0.262 2.9 -0.0458 0.00927 -0.314 0.208 1.49 0.00188 14.2 1 16 -- --
32.84 0.267 2.89 0.00902 0.00586 -0.215 0.344 -- 0.0212 14.1 1.003 16 -- --
31.15 0.26 2.9 -0.0424 0.00885 -0.315 -- 1.57 0.00211 13.4 1.07 16 -- --
33.29 0.269 2.89 0.0208 0.0028 -0.202 -- -- 0.0196 13.2 1.092 16 -- --
31.16 0.26 2.9 -0.0423 -- -0.31 -- 1.57 0.00189 -- 1.068 16 -- --
33.77 0.272 2.89 0.0391 0.0607 -- -0.345 -- 0.0154 3.56 -- -- -- --
34.1 0.273 2.89 0.0449 0.0662 -- -- -- 0.0173 5.04 -- -- -- --
33.29 0.269 2.89 0.0208 -- -0.201 -- -- 0.0197 -- 1.086 16 -- --
33.29 0.269 2.89 -- 0.0168 -0.197 -- -- 0.0165 8.04 1 16 -- --
34.33 0.274 2.89 0.0473 -- -- -- -- 0.019 -- -- -- -- --
34.15 0.273 2.89 -- 0.067 -- -- -- 0.0123 5.02 -- -- -- --
33.3 0.269 2.89 -- -- -0.204 -- -- 0.0174 -- 1 16 -- --
34.39 0.274 2.89 -- -- -- -- -- 0.0137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.85 temperature 20.0 30 > th dose dependent rect. 2 1
2 22.90 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 22.92 temperature 20.0 30 > th dose independent rect. 2 1
6 22.94 atmosphere 1005.0 30 > th dose independent rect. 2 1
8 22.96 wind 3.0 30 < th dose dependent rect. 2 1
11 22.98 wind 3.0 30 < th dose independent rect. 2 1
18 23.04 temperature 10.0 30 > th dose independent rect. 2 1
20 23.04 temperature 30.0 30 < th dose independent rect. 2 1
21 23.04 humidity 50.0 30 > th dose independent rect. 2 1
26 23.04 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 23.04 radiation 1.0 30 < th dose independent rect. 2 1
33 23.04 precipitation 0.1 30 < th dose independent rect. 2 1
34 23.04 temperature 10.0 30 > th dose independent rect. 3 23
35 23.04 radiation 1.0 30 < th dose dependent rect. 2 1
40 23.04 precipitation 0.1 30 < th dose dependent rect. 2 1
41 23.05 humidity 50.0 30 > th dose dependent rect. 2 1
49 23.29 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 23.47 temperature 30.0 30 < th dose dependent rect. 2 1
53 23.67 wind 1.0 30 > th dose independent rect. 2 1
66 24.05 radiation 10.0 14400 < th dose dependent rect. 3 1
73 24.06 wind 9.0 1440 < th dose independent rect. 3 1
74 24.06 temperature 10.0 1440 > th dose independent rect. 3 1
77 24.06 temperature 30.0 1440 < th dose independent rect. 3 1
81 24.06 humidity 50.0 1440 > th dose independent rect. 3 1
90 24.06 atmosphere 995.0 1440 > th dose independent rect. 3 1
91 24.06 radiation 1.0 1440 < th dose independent rect. 3 1
111 24.06 temperature 10.0 1440 > th dose independent rect. 4 23
114 24.06 radiation 1.0 1440 < th dose dependent rect. 3 1
163 24.86 atmosphere 995.0 30 > th dose independent rect. 3 23
165 25.07 wind 9.0 30 < th dose independent rect. 3 23
173 25.40 precipitation 0.1 30 < th dose independent rect. 3 23
174 25.40 precipitation 0.1 30 < th dose dependent rect. 3 23
198 27.96 humidity 50.0 30 > th dose independent rect. 3 23
206 28.58 temperature 30.0 30 < th dose independent rect. 3 23
213 28.97 temperature 25.0 270 > th dose independent rect. 23 4
261 29.56 temperature 25.0 270 > th dose dependent rect. 23 4
269 29.66 temperature 25.0 270 > th dose dependent rect. 23 7
283 29.89 atmosphere 1015.0 30 < th dose independent rect. 3 23
309 30.18 wind 1.0 10 < th dose independent rect. 17 10
326 30.26 humidity 90.0 90 < th dose independent rect. 2 1
349 30.46 wind 1.0 30 > th dose independent rect. 3 23
420 30.87 wind 3.0 10 < th dose dependent rect. 22 5
427 30.90 wind 1.0 10 > th dose independent sin 15 NA
450 31.01 wind 3.0 10 < th dose dependent rect. 20 7
453 31.02 wind 9.0 30 < th dose dependent rect. 3 23
494 31.14 temperature 25.0 1440 < th dose independent rect. 1 1
497 31.14 radiation 10.0 30 < th dose dependent rect. 3 23
555 31.38 wind 1.0 10 < th dose independent rect. 2 10
573 31.42 temperature 10.0 30 > th dose dependent rect. 3 23
586 31.48 wind 1.0 10 > th dose independent no NA NA
676 31.60 radiation 10.0 30 < th dose independent rect. 3 23
707 31.67 wind 1.0 10 < th dose independent rect. 2 21
769 31.78 humidity 50.0 30 > th dose dependent rect. 3 23
818 31.84 wind 1.0 10 < th dose independent sin 16 NA
840 31.88 wind 1.0 30 > th dose dependent rect. 2 1