BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0402100 Os08g0402100|J023098G11
(426 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0402100 Lateral organ boundaries, LOB domain containin... 702 0.0
Os01g0572800 107 1e-23
Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LE... 105 6e-23
Os01g0169400 Similar to LOB domain protein 25 102 4e-22
Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LE... 100 3e-21
Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein 95 1e-19
Os03g0287400 Similar to LOB domain protein 4 92 7e-19
Os12g0106200 Similar to LOB domain protein 4 87 2e-17
Os11g0106900 Lateral organ boundaries, LOB domain containin... 87 2e-17
Os01g0825000 Similar to LOB domain protein 12 85 8e-17
Os05g0165450 Lateral organ boundaries, LOB domain containin... 85 9e-17
Os05g0346800 Similar to LOB domain protein 3 85 1e-16
Os01g0571500 83 5e-16
Os02g0820500 Similar to LOB domain protein 17 80 2e-15
Os03g0246900 Similar to LOB domain protein 16 75 7e-14
Os03g0149000 Similar to LOB domain protein 31 75 1e-13
Os10g0162600 Lateral organ boundaries, LOB domain containin... 73 4e-13
Os03g0149100 Adventitious rootless1 (LOB domain protein) 72 7e-13
Os08g0563400 Similar to LOB domain protein 17 70 3e-12
Os01g0573800 66 4e-11
Os09g0364100 Lateral organ boundaries, LOB domain containin... 65 6e-11
>Os08g0402100 Lateral organ boundaries, LOB domain containing protein
Length = 426
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/426 (82%), Positives = 353/426 (82%)
Query: 1 TASHQRQSLPVAARPPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNQACAA 60
TASHQRQSLPVAARPPH TNQACAA
Sbjct: 1 TASHQRQSLPVAARPPHSSGSGSGSGGSHRGASGGGSGGGGGGGGGGGGGGGGTNQACAA 60
Query: 61 CKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQ 120
CKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQ
Sbjct: 61 CKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQ 120
Query: 121 AEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLAMCRQXXXXXXXXXXXXXXXXXX 180
AEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLAMCRQ
Sbjct: 121 AEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLAMCRQAAAAGASGSVAAALPAGV 180
Query: 181 XDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHGQP 240
DDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHGQP
Sbjct: 181 LDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHGQP 240
Query: 241 QQLYDYFYYDSTAGDDVSSKPHLDINVDGMQHFDFDTNYDAEHKVELTSDHQMPVGVDEH 300
QQLYDYFYYDSTAGDDVSSKPHLDINVDGMQHFDFDTNYDAEHKVELTSDHQMPVGVDEH
Sbjct: 241 QQLYDYFYYDSTAGDDVSSKPHLDINVDGMQHFDFDTNYDAEHKVELTSDHQMPVGVDEH 300
Query: 301 NQIDDKGFEIKSGPSLVDVFDLRQEEEQVQTVDVNTDIEVKEMVDMNADIDVKTMVDENS 360
NQIDDKGFEIKSGPSLVDVFDLRQEEEQVQTVDVNTDIEVKEMVDMNADIDVKTMVDENS
Sbjct: 301 NQIDDKGFEIKSGPSLVDVFDLRQEEEQVQTVDVNTDIEVKEMVDMNADIDVKTMVDENS 360
Query: 361 NIDIIKTMVDXXXXXXXXXXXXXXXXXXIGVKEELPELDNGKIIAGDATQMAESSHCRLG 420
NIDIIKTMVD IGVKEELPELDNGKIIAGDATQMAESSHCRLG
Sbjct: 361 NIDIIKTMVDVNADIVDVVKTVVDVNGDIGVKEELPELDNGKIIAGDATQMAESSHCRLG 420
Query: 421 LGVSSF 426
LGVSSF
Sbjct: 421 LGVSSF 426
>Os01g0572800
Length = 251
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 68/97 (70%)
Query: 57 ACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
ACAACK+QRR+C P+C +A YFPA+Q RF NAHRLFG+ NIL+ + EL DDAM++
Sbjct: 40 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKS 99
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTV 153
++Y+++ DP+GG ++ L ++L AEL+ V
Sbjct: 100 VVYESDAWVIDPLGGAAGIVKGLSQELARLKAELDAV 136
>Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 269
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 60/91 (65%)
Query: 54 TNQACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDA 113
T CAACK+ RRKC PDC APYFP D ++F++ HR+FG SN+ K L L P +DA
Sbjct: 35 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94
Query: 114 MRTLIYQAEMRAHDPVGGCCRVICDLERQLE 144
+ +L Y+A+MR DPV GC +I L+R L
Sbjct: 95 VNSLAYEADMRLRDPVYGCVAIISILQRNLR 125
>Os01g0169400 Similar to LOB domain protein 25
Length = 251
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CAACK+ RRKC P C APYFP ++ ++F N H++FG SN+ K L L P +DA+ +L
Sbjct: 31 CAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSL 90
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQL-----ELDTA 148
Y+AE R DPV GC I L+RQ+ ELDTA
Sbjct: 91 AYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDTA 126
>Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 279
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CAACK+ RRKC PDC APYFP D ++F++ HR+FG SN+ K L L P +DA+ +L
Sbjct: 40 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSL 99
Query: 118 IYQAEMRAHDPVGGCCRVI 136
Y+A+MR DPV GC VI
Sbjct: 100 AYEADMRLRDPVYGCVGVI 118
>Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein
Length = 340
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CAACK RRKC C APYFP DQ +F N H++FG SN+ K L L+PE +DA+ +L
Sbjct: 41 CAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTKLLNDLQPEQREDAVNSL 100
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQLE 144
Y+AE R DPV GC I L+ +++
Sbjct: 101 AYEAEARLRDPVYGCVAYISILQLRIK 127
>Os03g0287400 Similar to LOB domain protein 4
Length = 239
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CAACK RR+C C +APYFP + +F AHR+FG SNI+K L+ L DA+ ++
Sbjct: 64 CAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADAVSSM 123
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQ 142
+Y+AE R DPV GC +C L+++
Sbjct: 124 VYEAEARLRDPVYGCAGAVCRLQKE 148
>Os12g0106200 Similar to LOB domain protein 4
Length = 156
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CA+CK RR+C +C APYFPA++ +RF HR+FG SN+ K L + P DA+ +L
Sbjct: 10 CASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSL 69
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQL 143
+Y+A R DPV GC I L+ Q+
Sbjct: 70 VYEANARMRDPVYGCVAAISFLQNQV 95
>Os11g0106900 Lateral organ boundaries, LOB domain containing protein
Length = 156
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CA+CK RR+C +C APYFPA++ +RF HR+FG SN+ K L + P DA+ +L
Sbjct: 10 CASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVSSL 69
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQL 143
+Y+A R DPV GC I L+ Q+
Sbjct: 70 VYEANARMRDPVYGCVAAISFLQNQV 95
>Os01g0825000 Similar to LOB domain protein 12
Length = 251
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%)
Query: 54 TNQACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDA 113
T CAACK RR+C +CP APYF + +F H++FG SN+ K L + DA
Sbjct: 56 TVTPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADA 115
Query: 114 MRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTV 153
+L+Y+A +R DPV GC I L++Q+ AEL V
Sbjct: 116 ASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAELEAV 155
>Os05g0165450 Lateral organ boundaries, LOB domain containing protein
Length = 241
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CAACK RR+C +CP +PYF + +F + H++FG SN+ K L + DA +L
Sbjct: 62 CAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSL 121
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTV 153
+Y+A +R DPV GC I L++Q++ AEL V
Sbjct: 122 VYEANLRLRDPVYGCMGAILTLQQQVQALEAELAAV 157
>Os05g0346800 Similar to LOB domain protein 3
Length = 200
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 53/87 (60%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTL 117
CA+CK RR+C DC AP+FPAD +F H++FG SN+ K L+ L + DA+ +L
Sbjct: 7 CASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQRGDAVSSL 66
Query: 118 IYQAEMRAHDPVGGCCRVICDLERQLE 144
+Y+A R DPV GC I L+ Q+
Sbjct: 67 VYEANARMRDPVYGCVGAISFLQNQVS 93
>Os01g0571500
Length = 356
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 55 NQACAACKYQRRKCNPD-CPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDA 113
N CAACK+ RR C+P+ C +AP+FPA Q R + R+FG+ +L+ PE DD
Sbjct: 20 NPRCAACKFLRRACSPEECRLAPHFPASQPERLQSVERVFGMRKVLELAHKAGPEYLDDI 79
Query: 114 MRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTA 148
+ +++Y+AE DPV G V+ LE LE+ TA
Sbjct: 80 LSSIVYEAEAWGRDPVWGPTGVVGALE--LEIGTA 112
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQQ-RRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
CAAC+Y R C P+C +APYFPA Q +F N HRLF ++N+L+ + + E DD M
Sbjct: 175 CAACRYLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAA 234
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHL 157
++Y+A+ A DP G V+ L EL L+ + HL
Sbjct: 235 IVYEADAWARDPRYGVAGVVRSLTN--ELARVRLDEIAFHL 273
>Os02g0820500 Similar to LOB domain protein 17
Length = 216
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQ-QRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
C ACK+ RR+C P+C APYF ++Q RF H++FG SN K L HL +A+ T
Sbjct: 22 CGACKFLRRRCVPECVFAPYFSSEQGAARFAAIHKVFGASNASKLLSHLPVADRCEAVVT 81
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLA 158
+ Y+A+ R DPV GC I L++Q+ + A+L LA
Sbjct: 82 ITYEAQARLRDPVYGCVAQIFALQQQVAILQAQLMQARAQLA 123
>Os03g0246900 Similar to LOB domain protein 16
Length = 275
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQ-QRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
C ACK+ RRKC C APYF ++Q F H++FG SN+ K L + DA+ T
Sbjct: 38 CGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVT 97
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLA 158
+ Y+A+ R DPV GC I L++Q+ AEL + HLA
Sbjct: 98 ICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYLQAHLA 139
>Os03g0149000 Similar to LOB domain protein 31
Length = 185
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPA-DQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
C ACK+ RRKC +C APYF A D +F H++FG SN K L+ + P + T
Sbjct: 14 CGACKFLRRKCAAECVFAPYFCAEDGAAQFAAIHKVFGASNAAKLLQQVAPGDRSEVAAT 73
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQL 143
+ Y+A+ R DPV GC I L++QL
Sbjct: 74 VTYEAQARLRDPVYGCVAHIFALQQQL 100
>Os10g0162600 Lateral organ boundaries, LOB domain containing protein
Length = 269
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQ-QRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
C ACK+ RRKC C APYF ++ F H++FG SN+ K L+ + DA+ T
Sbjct: 34 CGACKFLRRKCVQGCIFAPYFDSEAGAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVT 93
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLA 158
+ Y+A+ R DPV GC I L+ Q+ +ELN + HL+
Sbjct: 94 ICYEAQARLRDPVYGCVAHIFHLQHQVAGLQSELNYLQGHLS 135
>Os03g0149100 Adventitious rootless1 (LOB domain protein)
Length = 259
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQ-QRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
C ACK+ RRKC C APYF +Q F H++FG SN+ K L HL +A T
Sbjct: 8 CGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVT 67
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTV 153
+ Y+A+ R DP+ GC I L++Q+ A+L ++
Sbjct: 68 ISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASL 104
>Os08g0563400 Similar to LOB domain protein 17
Length = 215
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 58 CAACKYQRRKCNPDCPMAPYFPADQ-QRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRT 116
C ACK+ RRKC C APYF +Q F H++FG SN K L HL +A T
Sbjct: 8 CGACKFLRRKCVKGCVFAPYFCHEQGAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVT 67
Query: 117 LIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTV 153
+ Y+A+ R DP+ GC I L++Q+ A+L ++
Sbjct: 68 MSYEAQARLRDPIYGCVAHIFSLQQQVVSLQAQLESL 104
>Os01g0573800
Length = 140
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 65 RRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDD--AMRTLIYQAE 122
R C CP+APYFPAD+ RF A+ LFGV IL+ L P+ M ++++ ++
Sbjct: 20 RPSCPAGCPLAPYFPADRPERFEYANLLFGVDGILRRLEAAGPDTVTRLATMASIVFVSD 79
Query: 123 MRAHDPVGGCCRVICDLERQLELDTAEL 150
RA DPV G VI +L+++L AE+
Sbjct: 80 ARAADPVHGAYGVIRNLQQELASVKAEI 107
>Os09g0364100 Lateral organ boundaries, LOB domain containing protein
Length = 234
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 114 MRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLAMCRQXXXXXXXXXXX 173
M+ L ++A RA DPVGG RV+ +L RQ E+ AEL V HHL +CRQ
Sbjct: 1 MQALTFEANARASDPVGGAARVVVELCRQYEMLHAELAAVQHHLKLCRQ--------QHA 52
Query: 174 XXXXXXXXDDACADLDVTSSNQPLLLSAEHEV--------VDALYANQEADAAILHADGH 225
D A++D + +L A V VDA YA+Q+ DG
Sbjct: 53 AAAAAAANDPLVANVDPLADPAAEMLFAGAVVPNQNDDAMVDAFYADQQT-----AGDGD 107
Query: 226 HNQDESQREHHHGQ--PQQLYDYFYYDSTAGDDVSS 259
Q + E Q PQQ Y+Y Y TAGD+ SS
Sbjct: 108 QEQYLVKDEALAAQPPPQQPYEYLNY-GTAGDEGSS 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,552,511
Number of extensions: 472325
Number of successful extensions: 1356
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 1338
Number of HSP's successfully gapped: 25
Length of query: 426
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 322
Effective length of database: 11,605,545
Effective search space: 3736985490
Effective search space used: 3736985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)