FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0825000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LOB domain protein 12.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0528) R2 : 0.116
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.53 (0.664) R2dE : 0.0925 R2E : 0.094
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.357 (0.111) R2dN8 : 0.0216 R2N8 : 0.0231
σ : 0.991
deviance : 453.05
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1008
memory length : 136
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.5
open length of G : 3.55

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
427.38 0.971 3.47 -0.324 0.573 1.27 0.0978 5.83 -0.538 8.42 1004 80 12.1 6.07
462.95 1 3.47 -0.409 0.65 1.19 -1.43 -- -0.563 6.99 1001 99 12 6.03
427.17 0.963 3.47 -0.323 0.586 1.24 -- 5.82 -0.535 8.36 1003 88 12.1 6.07
465.75 1.01 3.47 -0.395 0.58 1.12 -- -- -0.553 8.33 1003 99 12 6.27
442.03 0.979 3.5 -0.265 -- 1.36 -- 7.54 -0.543 -- 1006 68 12 6.1
480.56 1.03 3.44 -0.384 0.487 -- 0.43 -- -0.43 11.5 -- -- -- --
481.12 1.03 3.44 -0.369 0.491 -- -- -- -0.43 11 -- -- -- --
456.51 0.995 3.33 -0.663 -- 3.12 -- -- -0.231 -- 1009 143 13.6 3.68
469.64 1.01 3.46 -- 0.576 1.12 -- -- -0.537 8.43 1004 102 12 6.17
496.14 1.04 3.45 -0.38 -- -- -- -- -0.433 -- -- -- -- --
484.71 1.03 3.43 -- 0.495 -- -- -- -0.389 11.1 -- -- -- --
453.05 0.991 3.41 -- -- 4.53 -- -- -0.357 -- 1008 136 13.5 3.55
499.95 1.04 3.44 -- -- -- -- -- -0.391 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 429.50 atmosphere 1005.0 90 > th dose dependent rect. 12 6
8 433.93 atmosphere 1005.0 270 > th dose dependent rect. 12 3
15 434.94 temperature 25.0 270 < th dose dependent rect. 13 1
17 435.17 temperature 25.0 270 < th dose independent rect. 13 1
20 435.87 temperature 25.0 90 < th dose dependent rect. 12 5
41 438.65 temperature 25.0 90 < th dose independent rect. 12 5
64 440.44 atmosphere 995.0 90 > th dose dependent rect. 12 11
65 440.87 radiation 10.0 270 < th dose dependent rect. 12 2
85 441.99 radiation 10.0 10 < th dose independent rect. 13 3
97 442.69 atmosphere 1005.0 90 > th dose independent rect. 12 5
99 442.71 radiation 10.0 270 < th dose independent rect. 12 2
105 442.96 wind 3.0 90 > th dose independent rect. 12 1
109 443.14 radiation 10.0 30 < th dose dependent rect. 13 3
117 443.37 radiation 10.0 90 < th dose dependent rect. 7 10
123 443.61 temperature 25.0 10 < th dose independent rect. 12 4
149 444.31 radiation 10.0 10 < th dose dependent rect. 7 9
157 444.46 radiation 10.0 270 < th dose dependent rect. 9 6
164 444.63 humidity 90.0 10 < th dose independent rect. 5 7
169 444.71 precipitation 0.1 270 > th dose dependent rect. 13 1
172 444.72 precipitation 0.1 270 > th dose independent rect. 13 1
223 445.78 radiation 40.0 270 < th dose dependent rect. 12 2
267 446.44 wind 1.0 90 > th dose dependent rect. 12 1
349 447.95 temperature 10.0 90 > th dose dependent rect. 5 7
352 447.97 radiation 10.0 270 < th dose dependent rect. 19 21
357 448.05 atmosphere 1000.0 90 > th dose independent rect. 12 11
370 448.26 temperature 15.0 90 > th dose independent rect. 15 21
386 448.48 humidity 60.0 90 > th dose dependent rect. 12 5
390 448.53 humidity 70.0 90 > th dose independent rect. 12 5
427 449.04 humidity 60.0 270 > th dose independent rect. 13 1
428 449.06 humidity 60.0 270 > th dose dependent rect. 12 2
447 449.29 radiation 40.0 270 < th dose independent rect. 13 1
455 449.39 atmosphere 1000.0 90 > th dose independent rect. 12 17
497 450.09 wind 1.0 90 > th dose independent rect. 12 3
516 450.37 temperature 15.0 90 > th dose independent rect. 17 19
520 450.40 temperature 15.0 90 > th dose independent rect. 5 7
528 450.47 wind 7.0 90 < th dose independent rect. 15 21
536 450.52 radiation 1.0 90 > th dose independent rect. 18 18
549 450.64 atmosphere 995.0 90 > th dose dependent rect. 12 17
567 450.82 radiation 1.0 90 > th dose independent rect. 4 8
580 450.85 temperature 25.0 10 < th dose independent rect. 13 1
591 450.87 temperature 15.0 90 > th dose independent rect. 23 13
613 451.09 temperature 25.0 10 < th dose dependent rect. 14 1
649 451.22 temperature 10.0 30 > th dose dependent rect. 18 18
677 451.47 wind 1.0 10 > th dose independent rect. 2 10
680 451.48 temperature 10.0 90 > th dose dependent rect. 15 21
686 451.52 temperature 10.0 30 > th dose dependent rect. 2 10
692 451.63 wind 7.0 30 < th dose independent rect. 18 18
694 451.67 radiation 10.0 30 > th dose independent rect. 14 22
714 451.89 temperature 25.0 720 < th dose independent rect. 3 11
729 452.00 precipitation 0.1 90 < th dose independent rect. 12 3
730 452.00 precipitation 0.1 90 < th dose dependent rect. 12 3
737 452.08 temperature 20.0 90 > th dose independent rect. 12 3
739 452.11 wind 9.0 90 < th dose independent rect. 12 3
746 452.18 temperature 10.0 90 > th dose independent rect. 12 3
748 452.18 atmosphere 1015.0 90 < th dose independent rect. 12 3
778 452.47 precipitation 0.1 90 < th dose independent rect. 12 11
780 452.47 precipitation 0.1 90 < th dose dependent rect. 12 11
786 452.52 wind 1.0 30 > th dose independent rect. 12 6
791 452.58 precipitation 0.1 30 < th dose independent rect. 12 6
792 452.58 precipitation 0.1 30 < th dose dependent rect. 12 6
800 452.69 wind 9.0 90 < th dose independent rect. 13 23
801 452.69 temperature 10.0 10 > th dose dependent rect. 16 20
804 452.74 radiation 1.0 90 > th dose independent rect. 12 3
836 452.98 radiation 10.0 10 < th dose independent rect. 7 9
846 453.03 wind 7.0 90 < th dose independent rect. 23 13
851 453.08 wind 7.0 30 < th dose independent rect. 12 6
855 453.10 atmosphere 1000.0 90 > th dose independent rect. 12 19
857 453.11 temperature 15.0 270 > th dose dependent rect. 7 2
862 453.15 humidity 80.0 90 < th dose independent rect. 12 1
872 453.23 temperature 10.0 30 > th dose independent rect. 12 6
874 453.23 atmosphere 1015.0 30 < th dose independent rect. 12 6
883 453.29 wind 7.0 90 < th dose independent rect. 5 7
884 453.29 atmosphere 995.0 30 > th dose independent rect. 18 18
886 453.29 temperature 10.0 90 > th dose dependent rect. 23 13
926 453.49 temperature 15.0 720 > th dose independent rect. 5 15
935 453.53 precipitation 0.1 270 < th dose independent rect. 14 22
938 453.53 precipitation 0.1 270 < th dose dependent rect. 14 22
947 453.58 temperature 15.0 720 > th dose independent rect. 8 9
959 453.69 humidity 80.0 10 > th dose dependent rect. 12 5
979 453.78 atmosphere 995.0 90 > th dose dependent rect. 12 19
992 453.86 temperature 10.0 1440 > th dose independent rect. 6 7
995 453.86 atmosphere 995.0 1440 > th dose independent rect. 6 7
996 453.86 temperature 10.0 1440 > th dose independent rect. 13 17