BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0825000 Os01g0825000|AK121919
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0825000 Similar to LOB domain protein 12 422 e-118
Os05g0165450 Lateral organ boundaries, LOB domain containin... 182 2e-46
Os05g0346800 Similar to LOB domain protein 3 137 8e-33
Os12g0106200 Similar to LOB domain protein 4 126 1e-29
Os11g0106900 Lateral organ boundaries, LOB domain containin... 126 1e-29
Os01g0169400 Similar to LOB domain protein 25 122 3e-28
Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein 121 5e-28
Os03g0287400 Similar to LOB domain protein 4 120 1e-27
Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LE... 119 3e-27
Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LE... 117 7e-27
Os03g0149000 Similar to LOB domain protein 31 105 4e-23
Os02g0820500 Similar to LOB domain protein 17 103 1e-22
Os10g0162600 Lateral organ boundaries, LOB domain containin... 100 1e-21
Os03g0246900 Similar to LOB domain protein 16 99 2e-21
Os03g0149100 Adventitious rootless1 (LOB domain protein) 99 2e-21
Os08g0563400 Similar to LOB domain protein 17 99 3e-21
Os01g0772100 Lateral organ boundaries, LOB domain containin... 84 1e-16
Os08g0402100 Lateral organ boundaries, LOB domain containin... 76 2e-14
Os01g0571500 74 1e-13
Os01g0572800 71 7e-13
Os08g0517100 Similar to ASYMMETRIC LEAVES2 protein (LOB dom... 67 1e-11
>Os01g0825000 Similar to LOB domain protein 12
Length = 251
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/251 (86%), Positives = 218/251 (86%)
Query: 1 MSTERERLDEIGKKIKREPDXXXXXXXXXXXXXXXXXXPIEHRVPHRLGLGGAVNTVTPC 60
MSTERERLDEIGKKIKREPD PIEHRVPHRLGLGGAVNTVTPC
Sbjct: 1 MSTERERLDEIGKKIKREPDTAGVVVAAVAGTGTGTATPIEHRVPHRLGLGGAVNTVTPC 60
Query: 61 AACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLV 120
AACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLV
Sbjct: 61 AACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLV 120
Query: 121 YEANLRLRDPVYGCMGAISMXXXXXXXXXXXXXXXRAEIFKRRYRQAGAATGLMDDVQVH 180
YEANLRLRDPVYGCMGAISM RAEIFKRRYRQAGAATGLMDDVQVH
Sbjct: 121 YEANLRLRDPVYGCMGAISMLQQQVNALEAELEAVRAEIFKRRYRQAGAATGLMDDVQVH 180
Query: 181 ITAGFAAPPPPPSMHARDVVSVADAGGQGQELAGAPVISSASPPVYPAGQPSTSTTDYSS 240
ITAGFAAPPPPPSMHARDVVSVADAGGQGQELAGAPVISSASPPVYPAGQPSTSTTDYSS
Sbjct: 181 ITAGFAAPPPPPSMHARDVVSVADAGGQGQELAGAPVISSASPPVYPAGQPSTSTTDYSS 240
Query: 241 LNTSEHAAYFG 251
LNTSEHAAYFG
Sbjct: 241 LNTSEHAAYFG 251
>Os05g0165450 Lateral organ boundaries, LOB domain containing protein
Length = 241
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 138/250 (55%), Gaps = 13/250 (5%)
Query: 2 STERERLDEIGKKIKREPDXXXXXXXXXXXXXXXXXXPIEHRVPHRLGLGGAVNTVTPCA 61
S ++ D++G+KIKRE + AVNT+TPCA
Sbjct: 5 SDWQDHQDQVGRKIKRESSAADAADGRTTMMARRSCS-MPAAGAGPGSAAAAVNTITPCA 63
Query: 62 ACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSLVY 121
ACKLLRRRCAQECPF+PYFSP EPHKFA+VHKVFGASNVSKMLLEV E++R DAA+SLVY
Sbjct: 64 ACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVY 123
Query: 122 EANLRLRDPVYGCMGAISMXXXXXXXXXXXXXXXRAEIFKRRYRQAGAATGLMDDVQVHI 181
EANLRLRDPVYGCMGAI RA+I + +YR AA L H+
Sbjct: 124 EANLRLRDPVYGCMGAILTLQQQVQALEAELAAVRADIVRHKYRLPSAAAVLPSSHASHL 183
Query: 182 TAGFAAPPPPPSMHARDVVSVADAGGQGQELAGAPVISSASPPVYPAGQPSTSTTDYSSL 241
A AA P VV+ A + V ++AS S+TDYSS+
Sbjct: 184 LAAAAAARQLPVAGTMGVVTTATLPASASSSSTTAVYAAAS-----------SSTDYSSI 232
Query: 242 NTSEHAAYFG 251
T+E+ YF
Sbjct: 233 -TNENVPYFS 241
>Os05g0346800 Similar to LOB domain protein 3
Length = 200
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 2/118 (1%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAAS 117
+PCA+CKLLRRRC ++C FAP+F +PHKFA VHKVFGASNVSKML E+ +R DA S
Sbjct: 5 SPCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQRGDAVS 64
Query: 118 SLVYEANLRLRDPVYGCMGAISMXXXXXXXXXXXXXXXRAEIF--KRRYRQAGAATGL 173
SLVYEAN R+RDPVYGC+GAIS +AEI + ++R GAA L
Sbjct: 65 SLVYEANARMRDPVYGCVGAISFLQNQVSQLQMQLAVAQAEILCIQMQHRDDGAAHQL 122
>Os12g0106200 Similar to LOB domain protein 4
Length = 156
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 66/83 (79%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAAS 117
TPCA+CKLLRRRC EC FAPYF E +FA VH+VFGASNVSKMLL+V +R DA S
Sbjct: 8 TPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVS 67
Query: 118 SLVYEANLRLRDPVYGCMGAISM 140
SLVYEAN R+RDPVYGC+ AIS
Sbjct: 68 SLVYEANARMRDPVYGCVAAISF 90
>Os11g0106900 Lateral organ boundaries, LOB domain containing protein
Length = 156
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 66/83 (79%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAAS 117
TPCA+CKLLRRRC EC FAPYF E +FA VH+VFGASNVSKMLL+V +R DA S
Sbjct: 8 TPCASCKLLRRRCTSECVFAPYFPAEEAQRFAMVHRVFGASNVSKMLLDVPPPQRPDAVS 67
Query: 118 SLVYEANLRLRDPVYGCMGAISM 140
SLVYEAN R+RDPVYGC+ AIS
Sbjct: 68 SLVYEANARMRDPVYGCVAAISF 90
>Os01g0169400 Similar to LOB domain protein 25
Length = 251
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 77/131 (58%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAAS 117
+PCAACK LRR+C C FAPYF P EP KFA VHKVFGASNV+K+L E+ +R DA S
Sbjct: 29 SPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVS 88
Query: 118 SLVYEANLRLRDPVYGCMGAISMXXXXXXXXXXXXXXXRAEIFKRRYRQAGAATGLMDDV 177
SL YEA R++DPVYGC+GAIS+ AE+ + + G T L
Sbjct: 89 SLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDTAHAELLRYACGEVGIPTALPVTA 148
Query: 178 QVHITAGFAAP 188
+ A AP
Sbjct: 149 APRLAAAMPAP 159
>Os03g0612400 Similar to LATERAL ORGAN BOUNDARIES protein
Length = 340
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 72/98 (73%), Gaps = 4/98 (4%)
Query: 47 RLGLGGAVNTVT----PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSK 102
RLGLG + ++ PCAACKLLRR+C Q C FAPYF P +P KFA VHKVFGASNV+K
Sbjct: 24 RLGLGRDRSEMSSSSSPCAACKLLRRKCTQGCVFAPYFPPDQPAKFANVHKVFGASNVTK 83
Query: 103 MLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAISM 140
+L ++ +R DA +SL YEA RLRDPVYGC+ IS+
Sbjct: 84 LLNDLQPEQREDAVNSLAYEAEARLRDPVYGCVAYISI 121
>Os03g0287400 Similar to LOB domain protein 4
Length = 239
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 69/108 (63%)
Query: 56 TVTPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADA 115
++PCAACK+LRRRCA C APYF P EP KF H+VFGASN+ K+L E+ E+ RADA
Sbjct: 60 VLSPCAACKVLRRRCADGCVLAPYFPPTEPTKFTTAHRVFGASNIIKLLQELPESARADA 119
Query: 116 ASSLVYEANLRLRDPVYGCMGAISMXXXXXXXXXXXXXXXRAEIFKRR 163
SS+VYEA RLRDPVYGC GA+ +A++ R
Sbjct: 120 VSSMVYEAEARLRDPVYGCAGAVCRLQKEANELKVQLARAQADLLNAR 167
>Os05g0417000 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 279
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 64/82 (78%)
Query: 59 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASS 118
PCAACK LRR+C +C FAPYF P P KF VH+VFGASNV+K+L E+ +R DA +S
Sbjct: 39 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNS 98
Query: 119 LVYEANLRLRDPVYGCMGAISM 140
L YEA++RLRDPVYGC+G IS+
Sbjct: 99 LAYEADMRLRDPVYGCVGVISV 120
>Os01g0889400 Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2)
Length = 269
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 65/85 (76%)
Query: 56 TVTPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADA 115
T +PCAACK LRR+C +C FAPYF P P KF VH+VFGASNV+K+L E+ +R DA
Sbjct: 35 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94
Query: 116 ASSLVYEANLRLRDPVYGCMGAISM 140
+SL YEA++RLRDPVYGC+ IS+
Sbjct: 95 VNSLAYEADMRLRDPVYGCVAIISI 119
>Os03g0149000 Similar to LOB domain protein 31
Length = 185
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 49 GLGGAVNTVTPCAACKLLRRRCAQECPFAPYFSPHE-PHKFAAVHKVFGASNVSKMLLEV 107
G+GG + PC ACK LRR+CA EC FAPYF + +FAA+HKVFGASN +K+L +V
Sbjct: 5 GVGGVPGS--PCGACKFLRRKCAAECVFAPYFCAEDGAAQFAAIHKVFGASNAAKLLQQV 62
Query: 108 GEAERADAASSLVYEANLRLRDPVYGCMGAI 138
+R++ A+++ YEA RLRDPVYGC+ I
Sbjct: 63 APGDRSEVAATVTYEAQARLRDPVYGCVAHI 93
>Os02g0820500 Similar to LOB domain protein 17
Length = 216
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHE-PHKFAAVHKVFGASNVSKMLLEVGEAERADAA 116
+PC ACK LRRRC EC FAPYFS + +FAA+HKVFGASN SK+L + A+R +A
Sbjct: 20 SPCGACKFLRRRCVPECVFAPYFSSEQGAARFAAIHKVFGASNASKLLSHLPVADRCEAV 79
Query: 117 SSLVYEANLRLRDPVYGCMGAI 138
++ YEA RLRDPVYGC+ I
Sbjct: 80 VTITYEAQARLRDPVYGCVAQI 101
>Os10g0162600 Lateral organ boundaries, LOB domain containing protein
Length = 269
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 75/135 (55%), Gaps = 24/135 (17%)
Query: 59 PCAACKLLRRRCAQECPFAPYF-SPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAAS 117
PC ACK LRR+C Q C FAPYF S FAAVHKVFGASNVSK+L ++ R DA
Sbjct: 33 PCGACKFLRRKCVQGCIFAPYFDSEAGAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVV 92
Query: 118 SLVYEANLRLRDPVYGCMGAISMXXXXXXXXXXXXXXXRAEIFKRRYRQAGAATGLMDDV 177
++ YEA RLRDPVYGC+ A IF +++ AG + L + +
Sbjct: 93 TICYEAQARLRDPVYGCV---------------------AHIFHLQHQVAGLQSEL-NYL 130
Query: 178 QVHITAGFAAPPPPP 192
Q H++ P PPP
Sbjct: 131 QGHLST-MELPSPPP 144
>Os03g0246900 Similar to LOB domain protein 16
Length = 275
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Query: 60 CAACKLLRRRCAQECPFAPYFSPHE-PHKFAAVHKVFGASNVSKMLLEVGEAERADAASS 118
C ACK LRR+C C FAPYF + FAAVHKVFGASNVSK+LL++ +R DA +
Sbjct: 38 CGACKFLRRKCVSGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLQIPAHKRPDAVVT 97
Query: 119 LVYEANLRLRDPVYGCMGAI 138
+ YEA RLRDPVYGC+ I
Sbjct: 98 ICYEAQARLRDPVYGCVAHI 117
>Os03g0149100 Adventitious rootless1 (LOB domain protein)
Length = 259
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHEPH--KFAAVHKVFGASNVSKMLLEVGEAERADA 115
+PC ACK LRR+C + C FAPYF HE FAA+HKVFGASNVSK+L + A+R +A
Sbjct: 6 SPCGACKFLRRKCVRGCVFAPYFC-HEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEA 64
Query: 116 ASSLVYEANLRLRDPVYGCMGAI 138
A ++ YEA RLRDP+YGC+ I
Sbjct: 65 AVTISYEAQARLRDPIYGCVAHI 87
>Os08g0563400 Similar to LOB domain protein 17
Length = 215
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 3/83 (3%)
Query: 58 TPCAACKLLRRRCAQECPFAPYFSPHEP--HKFAAVHKVFGASNVSKMLLEVGEAERADA 115
+PC ACK LRR+C + C FAPYF HE FAA+HKVFGASN SK+L+ + ++R +A
Sbjct: 6 SPCGACKFLRRKCVKGCVFAPYFC-HEQGAAHFAAIHKVFGASNASKILMHLPVSDRCEA 64
Query: 116 ASSLVYEANLRLRDPVYGCMGAI 138
A ++ YEA RLRDP+YGC+ I
Sbjct: 65 AVTMSYEAQARLRDPIYGCVAHI 87
>Os01g0772100 Lateral organ boundaries, LOB domain containing protein
Length = 175
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 55/96 (57%), Gaps = 16/96 (16%)
Query: 59 PCAACKLLRRRCAQECPFAPYFSPHEPHK----------------FAAVHKVFGASNVSK 102
PC ACK LRRRC C FAP+FS FAAVH+VFGASNV+K
Sbjct: 38 PCGACKFLRRRCVPGCVFAPHFSGCGGSGVGAGVGGRGRERGAAEFAAVHRVFGASNVAK 97
Query: 103 MLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAI 138
+L V A R +AA ++ YEA R+ DPVYG +G I
Sbjct: 98 LLSRVPAALRREAARTVCYEAQARIADPVYGSVGTI 133
>Os08g0402100 Lateral organ boundaries, LOB domain containing protein
Length = 426
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 56 TVTPCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADA 115
T CAACK RR+C +CP APYF + +F H++FG SN+ K L + DA
Sbjct: 54 TNQACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDA 113
Query: 116 ASSLVYEANLRLRDPVYGCMGAI 138
+L+Y+A +R DPV GC I
Sbjct: 114 MRTLIYQAEMRAHDPVGGCCRVI 136
>Os01g0571500
Length = 356
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 60 CAACKLLRRRCAQECPFAPYF-SPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASS 118
CAAC+ L R C EC APYF + P +F VH++F +NV +M+ E ER D ++
Sbjct: 175 CAACRYLSRSCWPECLLAPYFPAGQPPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAA 234
Query: 119 LVYEANLRLRDPVYGCMGAI 138
+VYEA+ RDP YG G +
Sbjct: 235 IVYEADAWARDPRYGVAGVV 254
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 45 PHRLGLGGAVNTVTP----CAACKLLRRRCA-QECPFAPYFSPHEPHKFAAVHKVFGASN 99
P R GA +P CAACK LRR C+ +EC AP+F +P + +V +VFG
Sbjct: 4 PSRSTSSGAAKKPSPRNPRCAACKFLRRACSPEECRLAPHFPASQPERLQSVERVFGMRK 63
Query: 100 VSKMLLEVGEAERADAASSLVYEANLRLRDPVYGCMGAI 138
V ++ + G D SS+VYEA RDPV+G G +
Sbjct: 64 VLELAHKAGPEYLDDILSSIVYEAEAWGRDPVWGPTGVV 102
>Os01g0572800
Length = 251
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 60 CAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGEAERADAASSL 119
CAACK RRRC EC A YF ++P +F H++FG N+ +++ E R DA S+
Sbjct: 41 CAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSV 100
Query: 120 VYEANLRLRDPVYGCMGAI 138
VYE++ + DP+ G G +
Sbjct: 101 VYESDAWVIDPLGGAAGIV 119
>Os08g0517100 Similar to ASYMMETRIC LEAVES2 protein (LOB domain protein 36)
Length = 95
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 36/45 (80%)
Query: 60 CAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKML 104
CAAC+ LRRRCA +C AP+F PH++A VH+VFGASNV+++L
Sbjct: 48 CAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLL 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,424,973
Number of extensions: 360929
Number of successful extensions: 3213
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 3205
Number of HSP's successfully gapped: 23
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)