Os01g0889400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2).
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Os01g0889400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to LOB domain protein 6 (ASYMMETRIC LEAVES2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 179.88 | 0.63 | 5.68 | -1.91 | 1.88 | 1.13 | -0.61 | 3.27 | 0.096 | 5.06 | 21.99 | 1334 | -- | -- |
| 183.72 | 0.631 | 5.76 | -2.85 | 1.87 | 1.35 | -0.498 | -- | 0.00181 | 5.16 | 25.5 | 1288 | -- | -- |
| 180.77 | 0.626 | 5.68 | -1.92 | 1.88 | 1.12 | -- | 3.2 | 0.096 | 5.05 | 21.93 | 1356 | -- | -- |
| 184.36 | 0.632 | 5.76 | -2.86 | 1.87 | 1.38 | -- | -- | -0.0153 | 5.19 | 25.22 | 1283 | -- | -- |
| 358.05 | 0.881 | 5.7 | -1.97 | -- | 1.42 | -- | 3.37 | 0.129 | -- | 23.83 | 1269 | -- | -- |
| 256.21 | 0.75 | 5.73 | -2.42 | 2.01 | -- | -0.259 | -- | 0.128 | 4.85 | -- | -- | -- | -- |
| 256.39 | 0.75 | 5.73 | -2.42 | 2.01 | -- | -- | -- | 0.129 | 4.85 | -- | -- | -- | -- |
| 361.01 | 0.885 | 5.81 | -2.91 | -- | 1.74 | -- | -- | -0.088 | -- | 24.17 | 1272 | -- | -- |
| 383.22 | 0.912 | 5.63 | -- | 1.97 | 0.926 | -- | -- | 0.64 | 4.83 | 31.15 | 1132 | -- | -- |
| 469.8 | 1.01 | 5.75 | -2.34 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 410.14 | 0.947 | 5.67 | -- | 1.97 | -- | -- | -- | 0.398 | 4.89 | -- | -- | -- | -- |
| 567.06 | 1.11 | 5.64 | -- | -- | 0.97 | -- | -- | 0.657 | -- | 31.18 | 1200 | -- | -- |
| 614.32 | 1.16 | 5.69 | -- | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 178.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 3 | 178.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 39 | 180.04 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 44 | 180.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 77 | 180.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 88 | 180.83 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 143 | 181.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 161 | 181.69 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 189 | 181.81 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 204 | 181.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 7 |
| 221 | 182.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 222 | 182.02 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 229 | 182.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 255 | 182.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 357 | 182.49 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 426 | 182.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 453 | 182.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 516 | 182.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 578 | 183.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 594 | 183.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 600 | 183.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 610 | 183.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 689 | 183.50 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 724 | 183.61 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 758 | 183.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 764 | 183.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 846 | 183.96 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 871 | 184.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 874 | 184.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 22 |
| 901 | 184.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 915 | 184.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 931 | 184.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 951 | 184.18 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 953 | 184.18 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 968 | 184.21 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 979 | 184.23 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 1000 | 184.29 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 6 |